HEADER HYDROLASE 29-APR-16 5JML TITLE X-RAY STRUCTURE OF THE COMPLEX BETWEEN BOVINE PANCREATIC RIBONUCLEASE TITLE 2 AND PENTHACHLOROCARBONYLIRIDATE(III) (2 MONTHS OF SOAKING) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE PANCREATIC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RNASE 1,RNASE A; COMPND 5 EC: 3.1.27.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913 KEYWDS HYDROLASE, IRIDIUM COMPOUND, CORM, PROTEIN IRIDIUM INTERACTION EXPDTA X-RAY DIFFRACTION AUTHOR M.CATERINO,A.A.PETRUK,A.VERGARA,G.FERRARO,A.MERLINO REVDAT 3 10-JAN-24 5JML 1 LINK REVDAT 2 03-AUG-16 5JML 1 JRNL REVDAT 1 27-JUL-16 5JML 0 JRNL AUTH M.CATERINO,A.A.PETRUK,A.VERGARA,G.FERRARO,D.MARASCO, JRNL AUTH 2 F.DOCTOROVICH,D.A.ESTRIN,A.MERLINO JRNL TITL MAPPING THE PROTEIN-BINDING SITES FOR IRIDIUM(III)-BASED JRNL TITL 2 CO-RELEASING MOLECULES. JRNL REF DALTON TRANS V. 45 12206 2016 JRNL REFN ESSN 1477-9234 JRNL PMID 27411388 JRNL DOI 10.1039/C6DT01685E REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0103 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 9837 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.294 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 490 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 677 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 39 REMARK 3 BIN FREE R VALUE : 0.4400 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1902 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.28000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 1.50000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.576 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.315 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.261 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.091 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1981 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1795 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2718 ; 2.457 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4158 ; 1.253 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 254 ; 7.691 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;34.008 ;25.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 346 ;14.703 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;12.924 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 294 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2314 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 461 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1005 ; 2.542 ; 3.582 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1000 ; 2.536 ; 3.580 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1261 ; 4.084 ; 5.353 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1252 ; 4.068 ; 5.357 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 975 ; 2.333 ; 3.624 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 975 ; 2.333 ; 3.624 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1455 ; 3.928 ; 5.340 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2167 ; 6.914 ;26.749 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2120 ; 6.695 ;26.694 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 124 B 1 124 13058 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JML COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10756 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 72.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.13900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.7200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.55700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1JVT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG4K, 10 MM SOIUM CITRATE PH 5.1, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.79600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.19400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.79600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.19400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 IR IR B 203 C CMO B 206 2.01 REMARK 500 IR IR A 201 C CMO A 204 2.01 REMARK 500 O HOH A 331 O HOH B 328 2.15 REMARK 500 IR IR B 203 CL CL B 204 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 85 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 85 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 20 -83.32 5.26 REMARK 500 SER A 21 92.08 58.80 REMARK 500 SER A 22 -152.75 -111.25 REMARK 500 HIS A 48 66.69 -105.12 REMARK 500 GLN A 60 -131.57 -108.68 REMARK 500 ASN A 71 33.04 -96.47 REMARK 500 SER B 22 -154.43 -122.41 REMARK 500 HIS B 48 68.14 -104.69 REMARK 500 GLN B 60 -129.43 -108.89 REMARK 500 ASN B 71 34.49 -97.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 IR A 201 IR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 105 NE2 REMARK 620 2 O A 202 O 82.2 REMARK 620 3 HOH A 318 O 90.1 89.3 REMARK 620 4 HOH A 326 O 96.4 157.7 68.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 IR A 207 IR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 119 NE2 REMARK 620 2 HOH A 302 O 88.0 REMARK 620 3 HOH A 313 O 78.1 95.8 REMARK 620 4 HOH A 323 O 91.8 176.6 80.8 REMARK 620 5 HOH A 325 O 103.3 94.3 169.8 89.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 IR A 207 IR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 119 NE2 REMARK 620 2 HOH A 323 O 96.4 REMARK 620 3 HOH A 325 O 85.2 171.4 REMARK 620 4 HOH A 327 O 96.4 93.8 77.5 REMARK 620 5 HOH B 302 O 85.3 84.7 103.9 177.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 IR A 205 IR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 328 O REMARK 620 2 HOH A 332 O 169.7 REMARK 620 3 HOH A 334 O 88.3 81.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 IR B 203 IR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 105 NE2 REMARK 620 2 HOH B 320 O 88.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 IR B 201 IR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 119 NE2 REMARK 620 2 HOH B 301 O 70.9 REMARK 620 3 HOH B 314 O 82.8 97.0 REMARK 620 4 HOH B 323 O 109.9 171.5 91.5 REMARK 620 5 HOH B 325 O 98.3 87.4 175.6 84.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 IR B 201 IR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 119 NE2 REMARK 620 2 HOH B 301 O 80.8 REMARK 620 3 HOH B 314 O 96.0 169.9 REMARK 620 4 HOH B 323 O 90.9 92.5 97.2 REMARK 620 5 HOH B 325 O 87.2 87.7 82.6 178.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue O A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CMO B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IR B 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 208 DBREF 5JML A 1 124 UNP P61823 RNAS1_BOVIN 27 150 DBREF 5JML B 1 124 UNP P61823 RNAS1_BOVIN 27 150 SEQRES 1 A 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 A 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 A 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 A 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 A 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 A 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 A 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 A 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 A 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 A 124 VAL HIS PHE ASP ALA SER VAL SEQRES 1 B 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 B 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 B 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 B 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 B 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 B 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 B 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 B 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 B 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 B 124 VAL HIS PHE ASP ALA SER VAL HET IR A 201 1 HET O A 202 1 HET CL A 203 1 HET CMO A 204 2 HET IR A 205 1 HET CMO A 206 2 HET IR A 207 2 HET IR A 208 1 HET IR A 209 1 HET CL A 210 1 HET IR B 201 2 HET CMO B 202 2 HET IR B 203 1 HET CL B 204 1 HET CL B 205 1 HET CMO B 206 2 HET IR B 207 1 HET CL B 208 1 HETNAM IR IRIDIUM ION HETNAM O OXYGEN ATOM HETNAM CL CHLORIDE ION HETNAM CMO CARBON MONOXIDE FORMUL 3 IR 8(IR 4+) FORMUL 4 O O FORMUL 5 CL 5(CL 1-) FORMUL 6 CMO 4(C O) FORMUL 21 HOH *66(H2 O) HELIX 1 AA1 THR A 3 MET A 13 1 11 HELIX 2 AA2 SER A 23 ARG A 33 1 11 HELIX 3 AA3 SER A 50 VAL A 57 1 8 HELIX 4 AA4 CYS A 58 GLN A 60 5 3 HELIX 5 AA5 THR B 3 MET B 13 1 11 HELIX 6 AA6 SER B 23 ARG B 33 1 11 HELIX 7 AA7 SER B 50 VAL B 57 1 8 HELIX 8 AA8 CYS B 58 GLN B 60 5 3 SHEET 1 AA1 5 VAL A 43 VAL A 47 0 SHEET 2 AA1 5 MET A 79 GLU A 86 -1 O CYS A 84 N ASN A 44 SHEET 3 AA1 5 TYR A 97 GLU A 111 -1 O LYS A 98 N ARG A 85 SHEET 4 AA1 5 CYS A 72 GLN A 74 -1 N TYR A 73 O VAL A 108 SHEET 5 AA1 5 LYS A 61 VAL A 63 -1 N LYS A 61 O GLN A 74 SHEET 1 AA2 4 VAL A 43 VAL A 47 0 SHEET 2 AA2 4 MET A 79 GLU A 86 -1 O CYS A 84 N ASN A 44 SHEET 3 AA2 4 TYR A 97 GLU A 111 -1 O LYS A 98 N ARG A 85 SHEET 4 AA2 4 VAL A 116 VAL A 124 -1 O ALA A 122 N ILE A 107 SHEET 1 AA3 5 VAL B 43 VAL B 47 0 SHEET 2 AA3 5 MET B 79 GLU B 86 -1 O CYS B 84 N ASN B 44 SHEET 3 AA3 5 TYR B 97 GLU B 111 -1 O LYS B 104 N MET B 79 SHEET 4 AA3 5 CYS B 72 GLN B 74 -1 N TYR B 73 O VAL B 108 SHEET 5 AA3 5 LYS B 61 VAL B 63 -1 N LYS B 61 O GLN B 74 SHEET 1 AA4 4 VAL B 43 VAL B 47 0 SHEET 2 AA4 4 MET B 79 GLU B 86 -1 O CYS B 84 N ASN B 44 SHEET 3 AA4 4 TYR B 97 GLU B 111 -1 O LYS B 104 N MET B 79 SHEET 4 AA4 4 VAL B 116 VAL B 124 -1 O VAL B 118 N ALA B 109 SSBOND 1 CYS A 26 CYS A 84 1555 1555 2.03 SSBOND 2 CYS A 40 CYS A 95 1555 1555 2.01 SSBOND 3 CYS A 58 CYS A 110 1555 1555 2.03 SSBOND 4 CYS A 65 CYS A 72 1555 1555 2.00 SSBOND 5 CYS B 26 CYS B 84 1555 1555 2.02 SSBOND 6 CYS B 40 CYS B 95 1555 1555 2.03 SSBOND 7 CYS B 58 CYS B 110 1555 1555 2.02 SSBOND 8 CYS B 65 CYS B 72 1555 1555 2.04 LINK N LYS A 1 IR IR A 209 1555 1555 2.30 LINK NE2 HIS A 105 IR IR A 201 1555 1555 2.26 LINK NE2AHIS A 119 IR A IR A 207 1555 1555 2.25 LINK NE2BHIS A 119 IR B IR A 207 1555 1555 2.26 LINK IR IR A 201 O O A 202 1555 1555 2.00 LINK IR IR A 201 O HOH A 318 1555 1555 2.01 LINK IR IR A 201 O HOH A 326 1555 1555 2.00 LINK IR IR A 205 O HOH A 328 1555 1555 2.00 LINK IR IR A 205 O HOH A 332 1555 1555 2.00 LINK IR IR A 205 O HOH A 334 1555 1555 2.00 LINK IR A IR A 207 O HOH A 302 1555 1555 2.00 LINK IR A IR A 207 O HOH A 313 1555 1555 2.01 LINK IR A IR A 207 O AHOH A 323 1555 1555 2.00 LINK IR B IR A 207 O BHOH A 323 1555 1555 2.00 LINK IR A IR A 207 O AHOH A 325 1555 1555 2.01 LINK IR B IR A 207 O BHOH A 325 1555 1555 2.00 LINK IR B IR A 207 O HOH A 327 1555 1555 2.00 LINK IR B IR A 207 O HOH B 302 1555 3545 2.01 LINK IR A IR A 208 O AHOH A 305 1555 1555 2.01 LINK NE2 HIS B 105 IR IR B 203 1555 1555 2.25 LINK NE2AHIS B 119 IR A IR B 201 1555 1555 2.25 LINK NE2BHIS B 119 IR B IR B 201 1555 1555 1.84 LINK IR A IR B 201 O AHOH B 301 1555 1555 2.00 LINK IR B IR B 201 O BHOH B 301 1555 1555 2.00 LINK IR A IR B 201 O AHOH B 314 1555 1555 2.00 LINK IR B IR B 201 O BHOH B 314 1555 1555 2.00 LINK IR A IR B 201 O AHOH B 323 1555 1555 2.00 LINK IR B IR B 201 O BHOH B 323 1555 1555 2.00 LINK IR A IR B 201 O AHOH B 325 1555 1555 2.00 LINK IR B IR B 201 O BHOH B 325 1555 1555 2.00 LINK IR IR B 203 O HOH B 320 1555 1555 2.01 LINK IR B IR B 207 O HOH B 327 1555 1555 2.06 CISPEP 1 SER A 22 SER A 23 0 -21.99 CISPEP 2 TYR A 92 PRO A 93 0 7.17 CISPEP 3 ASN A 113 PRO A 114 0 3.09 CISPEP 4 TYR B 92 PRO B 93 0 9.10 CISPEP 5 ASN B 113 PRO B 114 0 2.15 SITE 1 AC1 6 HIS A 105 O A 202 CL A 203 CMO A 204 SITE 2 AC1 6 HOH A 318 HOH A 326 SITE 1 AC2 5 HIS A 105 IR A 201 CL A 203 CMO A 204 SITE 2 AC2 5 HOH A 318 SITE 1 AC3 5 THR A 78 HIS A 105 IR A 201 O A 202 SITE 2 AC3 5 CMO A 204 SITE 1 AC4 6 PRO A 114 IR A 201 O A 202 CL A 203 SITE 2 AC4 6 HOH A 318 HOH A 326 SITE 1 AC5 5 MET A 29 CMO A 206 HOH A 328 HOH A 332 SITE 2 AC5 5 HOH A 334 SITE 1 AC6 6 ALA A 19 MET A 29 ARG A 33 IR A 205 SITE 2 AC6 6 HOH A 328 HOH A 332 SITE 1 AC7 9 GLU A 111 HIS A 119 HOH A 302 HOH A 313 SITE 2 AC7 9 HOH A 323 HOH A 325 HOH A 327 LYS B 91 SITE 3 AC7 9 HOH B 302 SITE 1 AC8 5 GLN A 11 HIS A 12 LYS A 41 HOH A 305 SITE 2 AC8 5 HOH A 323 SITE 1 AC9 2 LYS A 1 CL A 210 SITE 1 AD1 1 IR A 209 SITE 1 AD2 6 HIS B 119 CMO B 202 HOH B 301 HOH B 314 SITE 2 AD2 6 HOH B 323 HOH B 325 SITE 1 AD3 4 IR B 201 HOH B 314 HOH B 323 HOH B 325 SITE 1 AD4 6 HIS B 105 CL B 204 CL B 205 CMO B 206 SITE 2 AD4 6 HOH B 320 HOH B 329 SITE 1 AD5 4 HIS B 105 IR B 203 CL B 205 CMO B 206 SITE 1 AD6 4 HIS B 105 IR B 203 CL B 204 CMO B 206 SITE 1 AD7 4 IR B 203 CL B 204 CL B 205 HOH B 320 SITE 1 AD8 6 GLN B 11 HIS B 12 LYS B 41 HOH B 311 SITE 2 AD8 6 HOH B 323 HOH B 327 SITE 1 AD9 3 ASN B 62 THR B 70 GLY B 88 CRYST1 99.592 32.388 72.595 90.00 89.97 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010041 0.000000 -0.000005 0.00000 SCALE2 0.000000 0.030876 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013775 0.00000