HEADER TRANSCRIPTION 29-APR-16 5JMM TITLE CRYSTAL STRUCTURE OF HERA-LBD (Y537S) IN COMPLEX WITH BIOCHANIN A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTROGEN RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 5 GROUP A MEMBER 1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ESTROGEN RECEPTOR; COMPND 10 CHAIN: B; COMPND 11 SYNONYM: ER,ER-ALPHA,ESTRADIOL RECEPTOR,NUCLEAR RECEPTOR SUBFAMILY 3 COMPND 12 GROUP A MEMBER 1; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 16 CHAIN: F, G; COMPND 17 FRAGMENT: UNP RESIDUES 686-698; COMPND 18 SYNONYM: NCOA-1,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74,BHLHE74, COMPND 19 PROTEIN HIN-2,RIP160,RENAL CARCINOMA ANTIGEN NY-REN-52,STEROID COMPND 20 RECEPTOR COACTIVATOR 1,SRC-1; COMPND 21 EC: 2.3.1.48; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ESR1, ESR, NR3A1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: ESR1, ESR, NR3A1; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 GENE: NCOA1, BHLHE74, SRC1; SOURCE 24 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 25 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS ESTROGEN RECEPTOR, ENVIRONMENTAL LIGAND, ISOFLAVONE, ENDOCRINE KEYWDS 2 DISRUPTOR, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR V.DELFOSSE,W.BOURGUET REVDAT 2 10-JAN-24 5JMM 1 REMARK REVDAT 1 10-MAY-17 5JMM 0 JRNL AUTH V.DELFOSSE,V.BOURGUET JRNL TITL CRYSTAL STRUCTURE OF HERA-LBD (Y537S) IN COMPLEX WITH JRNL TITL 2 BIOCHANIN A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.8 REMARK 3 NUMBER OF REFLECTIONS : 25307 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9447 - 4.3672 0.99 2960 155 0.1594 0.1761 REMARK 3 2 4.3672 - 3.4668 0.99 2921 154 0.1372 0.1925 REMARK 3 3 3.4668 - 3.0286 0.99 2911 153 0.1659 0.2225 REMARK 3 4 3.0286 - 2.7518 0.99 2928 155 0.1735 0.2210 REMARK 3 5 2.7518 - 2.5546 0.99 2890 152 0.1795 0.2650 REMARK 3 6 2.5546 - 2.4040 0.99 2900 152 0.1834 0.2583 REMARK 3 7 2.4040 - 2.2836 0.94 2734 144 0.1859 0.2664 REMARK 3 8 2.2836 - 2.1842 0.72 2122 112 0.2086 0.2964 REMARK 3 9 2.1842 - 2.1001 0.57 1676 88 0.2364 0.3222 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4037 REMARK 3 ANGLE : 0.826 5491 REMARK 3 CHIRALITY : 0.045 645 REMARK 3 PLANARITY : 0.004 685 REMARK 3 DIHEDRAL : 16.363 2459 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): 12.3720 3.4588 0.2027 REMARK 3 T TENSOR REMARK 3 T11: 0.1570 T22: 0.1324 REMARK 3 T33: 0.1365 T12: -0.0100 REMARK 3 T13: 0.0056 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 0.7581 L22: 0.7059 REMARK 3 L33: 2.0395 L12: -0.3623 REMARK 3 L13: -0.4771 L23: -0.1613 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: -0.1284 S13: -0.0483 REMARK 3 S21: 0.0358 S22: 0.0023 S23: -0.0014 REMARK 3 S31: 0.0886 S32: 0.0225 S33: -0.0002 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): 21.4106 2.9299 -23.6553 REMARK 3 T TENSOR REMARK 3 T11: 0.1247 T22: 0.1175 REMARK 3 T33: 0.1170 T12: 0.0068 REMARK 3 T13: -0.0141 T23: 0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.4382 L22: 1.0736 REMARK 3 L33: 1.0146 L12: 0.0063 REMARK 3 L13: -0.5282 L23: 0.3614 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: 0.0362 S13: -0.0089 REMARK 3 S21: 0.0536 S22: -0.0305 S23: -0.0339 REMARK 3 S31: 0.0684 S32: 0.0155 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN F REMARK 3 ORIGIN FOR THE GROUP (A): 11.9494 -14.5472 8.2851 REMARK 3 T TENSOR REMARK 3 T11: 0.4200 T22: 0.1856 REMARK 3 T33: 0.3640 T12: 0.0981 REMARK 3 T13: 0.0694 T23: 0.2166 REMARK 3 L TENSOR REMARK 3 L11: 0.1393 L22: 0.0312 REMARK 3 L33: 0.1893 L12: 0.0464 REMARK 3 L13: -0.0571 L23: -0.0702 REMARK 3 S TENSOR REMARK 3 S11: -0.1829 S12: -0.0750 S13: -0.1591 REMARK 3 S21: -0.0818 S22: -0.0491 S23: -0.0753 REMARK 3 S31: 0.0772 S32: 0.0228 S33: -0.1198 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN G REMARK 3 ORIGIN FOR THE GROUP (A): 36.0008 16.7231 -25.9556 REMARK 3 T TENSOR REMARK 3 T11: 0.0784 T22: 0.2763 REMARK 3 T33: 0.3976 T12: -0.1302 REMARK 3 T13: -0.0284 T23: 0.0501 REMARK 3 L TENSOR REMARK 3 L11: 0.0159 L22: 0.0602 REMARK 3 L33: 0.2966 L12: -0.0037 REMARK 3 L13: -0.0473 L23: -0.0049 REMARK 3 S TENSOR REMARK 3 S11: -0.0154 S12: 0.0019 S13: 0.1546 REMARK 3 S21: -0.0677 S22: -0.0651 S23: -0.1862 REMARK 3 S31: 0.0529 S32: 0.1730 S33: -0.0086 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JMM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220885. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.75 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977179 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 45.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 2.760 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05600 REMARK 200 FOR THE DATA SET : 11.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 60.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.25 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.090 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3UUA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 250 MM NACL 100 MM HEPES 16% PEG3350 REMARK 280 5% DMSO 10 MM B-MERCAPTOETHANOL, PH 7.75, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.61000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 298 REMARK 465 SER A 299 REMARK 465 HIS A 300 REMARK 465 MET A 301 REMARK 465 LYS A 302 REMARK 465 LYS A 303 REMARK 465 ASN A 304 REMARK 465 SER A 305 REMARK 465 GLN A 414 REMARK 465 GLY A 415 REMARK 465 LYS A 416 REMARK 465 CYS A 417 REMARK 465 VAL A 418 REMARK 465 GLU A 419 REMARK 465 GLY A 420 REMARK 465 LEU A 462 REMARK 465 SER A 463 REMARK 465 SER A 464 REMARK 465 THR A 465 REMARK 465 LEU A 466 REMARK 465 LEU A 549 REMARK 465 HIS A 550 REMARK 465 ALA A 551 REMARK 465 PRO A 552 REMARK 465 GLY B 298 REMARK 465 SER B 299 REMARK 465 HIS B 300 REMARK 465 MET B 301 REMARK 465 LYS B 302 REMARK 465 LYS B 303 REMARK 465 LEU B 462 REMARK 465 SER B 463 REMARK 465 SER B 464 REMARK 465 THR B 465 REMARK 465 LEU B 466 REMARK 465 LYS B 467 REMARK 465 SER B 468 REMARK 465 LEU B 469 REMARK 465 GLU B 470 REMARK 465 GLU B 471 REMARK 465 LEU B 549 REMARK 465 HIS B 550 REMARK 465 ALA B 551 REMARK 465 PRO B 552 REMARK 465 ARG F 686 REMARK 465 HIS F 687 REMARK 465 GLY F 697 REMARK 465 SER F 698 REMARK 465 ARG G 686 REMARK 465 GLY G 697 REMARK 465 SER G 698 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 306 CG CD1 CD2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 LEU A 372 CD1 CD2 REMARK 470 LYS A 401 CE NZ REMARK 470 ASN A 413 CG OD1 ND2 REMARK 470 MET A 421 CG SD CE REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 LYS A 467 CG CD CE NZ REMARK 470 SER A 468 OG REMARK 470 LEU A 469 CG CD1 CD2 REMARK 470 GLU A 470 CG CD OE1 OE2 REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 LYS A 481 CE NZ REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 GLU A 523 CG CD OE1 OE2 REMARK 470 LYS A 531 CE NZ REMARK 470 VAL A 533 CG1 CG2 REMARK 470 ARG A 548 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 335 CZ NH1 NH2 REMARK 470 LYS B 416 CG CD CE NZ REMARK 470 VAL B 418 CG1 CG2 REMARK 470 GLU B 419 CG CD OE1 OE2 REMARK 470 GLU B 423 CG CD OE1 OE2 REMARK 470 LYS B 472 CG CD CE NZ REMARK 470 ASP B 473 CG OD1 OD2 REMARK 470 ARG B 477 NE CZ NH1 NH2 REMARK 470 MET B 528 SD CE REMARK 470 LYS B 531 CG CD CE NZ REMARK 470 ARG B 548 CG CD NE CZ NH1 NH2 REMARK 470 HIS G 687 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG1 THR A 460 O HOH A 701 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 331 41.78 -88.79 REMARK 500 PRO B 333 31.49 -89.93 REMARK 500 THR B 460 33.15 -83.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QSO A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue QSO B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UUD RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH ESTRADIOL. REMARK 900 RELATED ID: 3UU7 RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH BISPHENOL A. REMARK 900 RELATED ID: 4TUZ RELATED DB: PDB REMARK 900 SAME PROTEIN COMPLEXED WITH A-ZEARALENOL. DBREF 5JMM A 302 552 UNP P03372 ESR1_HUMAN 302 552 DBREF 5JMM B 302 552 UNP P03372 ESR1_HUMAN 302 552 DBREF 5JMM F 686 698 UNP Q15788 NCOA1_HUMAN 686 698 DBREF 5JMM G 686 698 UNP Q15788 NCOA1_HUMAN 686 698 SEQADV 5JMM GLY A 298 UNP P03372 EXPRESSION TAG SEQADV 5JMM SER A 299 UNP P03372 EXPRESSION TAG SEQADV 5JMM HIS A 300 UNP P03372 EXPRESSION TAG SEQADV 5JMM MET A 301 UNP P03372 EXPRESSION TAG SEQADV 5JMM SER A 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQADV 5JMM GLY B 298 UNP P03372 EXPRESSION TAG SEQADV 5JMM SER B 299 UNP P03372 EXPRESSION TAG SEQADV 5JMM HIS B 300 UNP P03372 EXPRESSION TAG SEQADV 5JMM MET B 301 UNP P03372 EXPRESSION TAG SEQADV 5JMM SER B 537 UNP P03372 TYR 537 ENGINEERED MUTATION SEQRES 1 A 255 GLY SER HIS MET LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 A 255 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 A 255 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 A 255 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 A 255 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 A 255 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 A 255 VAL HIS LEU LEU GLU CSO ALA TRP LEU GLU ILE LEU MET SEQRES 8 A 255 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 A 255 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 A 255 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 A 255 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 A 255 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 A 255 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 A 255 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 A 255 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 A 255 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 A 255 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 A 255 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CYS LYS SEQRES 19 A 255 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 A 255 ASP ALA HIS ARG LEU HIS ALA PRO SEQRES 1 B 255 GLY SER HIS MET LYS LYS ASN SER LEU ALA LEU SER LEU SEQRES 2 B 255 THR ALA ASP GLN MET VAL SER ALA LEU LEU ASP ALA GLU SEQRES 3 B 255 PRO PRO ILE LEU TYR SER GLU TYR ASP PRO THR ARG PRO SEQRES 4 B 255 PHE SER GLU ALA SER MET MET GLY LEU LEU THR ASN LEU SEQRES 5 B 255 ALA ASP ARG GLU LEU VAL HIS MET ILE ASN TRP ALA LYS SEQRES 6 B 255 ARG VAL PRO GLY PHE VAL ASP LEU THR LEU HIS ASP GLN SEQRES 7 B 255 VAL HIS LEU LEU GLU CSO ALA TRP LEU GLU ILE LEU MET SEQRES 8 B 255 ILE GLY LEU VAL TRP ARG SER MET GLU HIS PRO GLY LYS SEQRES 9 B 255 LEU LEU PHE ALA PRO ASN LEU LEU LEU ASP ARG ASN GLN SEQRES 10 B 255 GLY LYS CYS VAL GLU GLY MET VAL GLU ILE PHE ASP MET SEQRES 11 B 255 LEU LEU ALA THR SER SER ARG PHE ARG MET MET ASN LEU SEQRES 12 B 255 GLN GLY GLU GLU PHE VAL CYS LEU LYS SER ILE ILE LEU SEQRES 13 B 255 LEU ASN SER GLY VAL TYR THR PHE LEU SER SER THR LEU SEQRES 14 B 255 LYS SER LEU GLU GLU LYS ASP HIS ILE HIS ARG VAL LEU SEQRES 15 B 255 ASP LYS ILE THR ASP THR LEU ILE HIS LEU MET ALA LYS SEQRES 16 B 255 ALA GLY LEU THR LEU GLN GLN GLN HIS GLN ARG LEU ALA SEQRES 17 B 255 GLN LEU LEU LEU ILE LEU SER HIS ILE ARG HIS MET SER SEQRES 18 B 255 ASN LYS GLY MET GLU HIS LEU TYR SER MET LYS CSO LYS SEQRES 19 B 255 ASN VAL VAL PRO LEU SER ASP LEU LEU LEU GLU MET LEU SEQRES 20 B 255 ASP ALA HIS ARG LEU HIS ALA PRO SEQRES 1 F 13 ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SER SEQRES 1 G 13 ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SER MODRES 5JMM CSO A 381 CYS MODIFIED RESIDUE MODRES 5JMM CSO B 381 CYS MODIFIED RESIDUE MODRES 5JMM CSO B 530 CYS MODIFIED RESIDUE HET CSO A 381 11 HET CSO B 381 11 HET CSO B 530 11 HET QSO A 601 21 HET QSO B 601 21 HET GOL B 602 6 HET EDO B 603 4 HET GOL B 604 6 HETNAM CSO S-HYDROXYCYSTEINE HETNAM QSO 5,7-DIHYDROXY-3-(4-METHOXYPHENYL)-4H-CHROMEN-4-ONE HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN QSO BIOCHANIN A HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CSO 3(C3 H7 N O3 S) FORMUL 5 QSO 2(C16 H12 O5) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 8 EDO C2 H6 O2 FORMUL 10 HOH *165(H2 O) HELIX 1 AA1 LEU A 306 LEU A 310 5 5 HELIX 2 AA2 THR A 311 ALA A 322 1 12 HELIX 3 AA3 SER A 338 LYS A 362 1 25 HELIX 4 AA4 GLY A 366 LEU A 370 5 5 HELIX 5 AA5 THR A 371 SER A 395 1 25 HELIX 6 AA6 VAL A 422 ASN A 439 1 18 HELIX 7 AA7 GLN A 441 SER A 456 1 16 HELIX 8 AA8 GLY A 457 PHE A 461 5 5 HELIX 9 AA9 SER A 468 ALA A 493 1 26 HELIX 10 AB1 THR A 496 ASN A 532 1 37 HELIX 11 AB2 SER A 537 HIS A 547 1 11 HELIX 12 AB3 SER B 305 LEU B 310 5 6 HELIX 13 AB4 THR B 311 GLU B 323 1 13 HELIX 14 AB5 SER B 338 LYS B 362 1 25 HELIX 15 AB6 THR B 371 SER B 395 1 25 HELIX 16 AB7 ASP B 411 LYS B 416 1 6 HELIX 17 AB8 GLY B 420 MET B 438 1 19 HELIX 18 AB9 GLN B 441 SER B 456 1 16 HELIX 19 AC1 ASP B 473 ALA B 493 1 21 HELIX 20 AC2 THR B 496 LYS B 531 1 36 HELIX 21 AC3 SER B 537 ALA B 546 1 10 HELIX 22 AC4 ILE F 689 GLU F 696 1 8 HELIX 23 AC5 LYS G 688 GLN G 695 1 8 SHEET 1 AA1 2 LYS A 401 ALA A 405 0 SHEET 2 AA1 2 LEU A 408 ASP A 411 -1 O LEU A 410 N LEU A 402 SHEET 1 AA2 2 LEU B 402 ALA B 405 0 SHEET 2 AA2 2 LEU B 408 LEU B 410 -1 O LEU B 410 N LEU B 402 LINK C GLU A 380 N CSO A 381 1555 1555 1.33 LINK C CSO A 381 N ALA A 382 1555 1555 1.33 LINK C GLU B 380 N CSO B 381 1555 1555 1.33 LINK C CSO B 381 N ALA B 382 1555 1555 1.32 LINK C LYS B 529 N CSO B 530 1555 1555 1.34 LINK C CSO B 530 N LYS B 531 1555 1555 1.34 SITE 1 AC1 12 MET A 343 LEU A 346 ALA A 350 GLU A 353 SITE 2 AC1 12 LEU A 387 MET A 388 LEU A 391 ARG A 394 SITE 3 AC1 12 HIS A 524 LEU A 525 MET A 528 HOH A 734 SITE 1 AC2 12 MET B 343 LEU B 346 ALA B 350 GLU B 353 SITE 2 AC2 12 LEU B 387 MET B 388 LEU B 391 ARG B 394 SITE 3 AC2 12 MET B 421 HIS B 524 LEU B 525 HOH B 747 SITE 1 AC3 3 GLU B 323 TRP B 393 GLY B 442 SITE 1 AC4 2 ALA B 312 HOH B 706 SITE 1 AC5 5 GLN B 441 GLU B 444 LEU B 489 ALA B 493 SITE 2 AC5 5 ARG B 503 CRYST1 54.400 81.220 58.170 90.00 109.76 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018382 0.000000 0.006602 0.00000 SCALE2 0.000000 0.012312 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018266 0.00000