HEADER HYDROLASE 29-APR-16 5JMS TITLE CRYSTAL STRUCTURE OF TGCDPK1 BOUND TO CGP060476 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-DOMAIN PROTEIN KINASE 1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII; SOURCE 3 ORGANISM_TAXID: 5811; SOURCE 4 GENE: CDPK1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PFBOH-MHL KEYWDS KINASE, STRUCTURAL GENOMICS CONSORTIUM, SGC, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.EL BAKKOURI,J.R.WALKER,P.LOPPNAU,S.GRASLUND,C.BOUNTRA, AUTHOR 2 C.H.ARROWSMITH,A.M.EDWARDS,R.HUI,D.V.LOVATO,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 2 27-SEP-23 5JMS 1 REMARK REVDAT 1 18-MAY-16 5JMS 0 JRNL AUTH M.EL BAKKOURI,J.R.WALKER,P.LOPPNAU,S.GRASLUND,C.BOUNTRA, JRNL AUTH 2 C.H.ARROWSMITH,A.M.EDWARDS,R.HUI,D.V.LOVATO, JRNL AUTH 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF TGCDPK1BOUNT TO CGP060476 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.880 REMARK 3 FREE R VALUE TEST SET COUNT : 968 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.42 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.83 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2884 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2276 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2726 REMARK 3 BIN R VALUE (WORKING SET) : 0.2267 REMARK 3 BIN FREE R VALUE : 0.2432 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.48 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 158 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3373 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 48 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.32 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.53050 REMARK 3 B22 (A**2) : 5.91850 REMARK 3 B33 (A**2) : -13.44900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.39830 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.340 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.369 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.246 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.911 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6688 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 12026 ; 3.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1468 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 81 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 1019 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6688 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 472 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7017 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 0.66 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.52 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 14.63 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|44 - 90} REMARK 3 ORIGIN FOR THE GROUP (A): -9.6385 -15.6021 104.7264 REMARK 3 T TENSOR REMARK 3 T11: -0.0659 T22: -0.0975 REMARK 3 T33: 0.0704 T12: 0.0035 REMARK 3 T13: -0.1027 T23: 0.0674 REMARK 3 L TENSOR REMARK 3 L11: 2.7819 L22: 6.2302 REMARK 3 L33: 3.6023 L12: -0.9756 REMARK 3 L13: -0.3959 L23: 0.2723 REMARK 3 S TENSOR REMARK 3 S11: -0.0489 S12: -0.0456 S13: 0.1793 REMARK 3 S21: 0.0876 S22: 0.0023 S23: -0.1353 REMARK 3 S31: -0.1604 S32: 0.1641 S33: 0.0466 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|91 - 213} REMARK 3 ORIGIN FOR THE GROUP (A): -14.1896 -17.4252 89.9285 REMARK 3 T TENSOR REMARK 3 T11: -0.1364 T22: -0.1086 REMARK 3 T33: 0.0330 T12: 0.0520 REMARK 3 T13: 0.0587 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.0762 L22: 2.8985 REMARK 3 L33: 4.0109 L12: -0.1421 REMARK 3 L13: 0.5829 L23: -2.0343 REMARK 3 S TENSOR REMARK 3 S11: 0.0933 S12: -0.0478 S13: -0.0584 REMARK 3 S21: -0.1675 S22: -0.3397 S23: -0.3787 REMARK 3 S31: 0.4771 S32: 0.3984 S33: 0.2463 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|214 - 376} REMARK 3 ORIGIN FOR THE GROUP (A): -10.4701 -7.0804 80.7436 REMARK 3 T TENSOR REMARK 3 T11: -0.1727 T22: -0.0758 REMARK 3 T33: -0.0783 T12: 0.0786 REMARK 3 T13: 0.0747 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 1.2290 L22: 2.0591 REMARK 3 L33: 2.2822 L12: 0.2825 REMARK 3 L13: 1.0455 L23: 0.2016 REMARK 3 S TENSOR REMARK 3 S11: -0.0460 S12: 0.3694 S13: -0.0553 REMARK 3 S21: -0.2362 S22: -0.0928 S23: -0.0847 REMARK 3 S31: 0.3247 S32: 0.3099 S33: 0.1388 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {A|377 - 437} REMARK 3 ORIGIN FOR THE GROUP (A): 5.2876 -4.8914 114.2389 REMARK 3 T TENSOR REMARK 3 T11: 0.1228 T22: -0.1250 REMARK 3 T33: 0.0489 T12: 0.1336 REMARK 3 T13: -0.1470 T23: 0.0842 REMARK 3 L TENSOR REMARK 3 L11: 1.4107 L22: 2.8836 REMARK 3 L33: -0.2600 L12: -2.4055 REMARK 3 L13: -1.6986 L23: -1.0318 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: 0.0742 S13: -0.0836 REMARK 3 S21: 0.0735 S22: -0.0667 S23: -0.0394 REMARK 3 S31: 0.0592 S32: -0.0354 S33: 0.0591 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {A|438 - 507} REMARK 3 ORIGIN FOR THE GROUP (A): 7.1990 5.3728 85.7330 REMARK 3 T TENSOR REMARK 3 T11: -0.1932 T22: -0.0509 REMARK 3 T33: -0.0347 T12: 0.0611 REMARK 3 T13: -0.0137 T23: 0.1056 REMARK 3 L TENSOR REMARK 3 L11: 7.1694 L22: 3.6634 REMARK 3 L33: 6.8990 L12: -2.1838 REMARK 3 L13: -3.0054 L23: 1.6387 REMARK 3 S TENSOR REMARK 3 S11: 0.0523 S12: 0.0872 S13: 0.3444 REMARK 3 S21: 0.1037 S22: 0.2654 S23: -0.0555 REMARK 3 S31: -0.3214 S32: -0.1890 S33: -0.3177 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JMS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220749. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-AUG-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19860 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 4IH8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 8000, 0.2 M NACL, 0.1 M HEPES REMARK 280 PH7.5, 15 % GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.37500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 3 REMARK 465 GLN A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 LEU A 8 REMARK 465 GLY A 9 REMARK 465 GLY A 10 REMARK 465 ALA A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 GLU A 14 REMARK 465 PRO A 15 REMARK 465 ARG A 16 REMARK 465 SER A 17 REMARK 465 ARG A 18 REMARK 465 GLY A 19 REMARK 465 HIS A 20 REMARK 465 ALA A 21 REMARK 465 ALA A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 SER A 25 REMARK 465 GLY A 26 REMARK 465 GLY A 27 REMARK 465 PRO A 28 REMARK 465 GLY A 29 REMARK 465 ASP A 30 REMARK 465 HIS A 31 REMARK 465 LEU A 32 REMARK 465 HIS A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 PRO A 36 REMARK 465 GLY A 37 REMARK 465 MET A 38 REMARK 465 PHE A 39 REMARK 465 VAL A 40 REMARK 465 GLN A 41 REMARK 465 HIS A 42 REMARK 465 SER A 43 REMARK 465 GLU A 314 REMARK 465 GLN A 315 REMARK 465 ILE A 316 REMARK 465 SER A 317 REMARK 465 VAL A 318 REMARK 465 ASP A 319 REMARK 465 SER A 396 REMARK 465 ASP A 415 REMARK 465 PHE A 416 REMARK 465 ASP A 417 REMARK 465 LYS A 418 REMARK 465 ASN A 419 REMARK 465 GLY A 420 REMARK 465 TYR A 421 REMARK 465 LYS A 486 REMARK 465 ASN A 487 REMARK 465 ASN A 488 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 44 OG1 CG2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 GLN A 86 CG CD OE1 NE2 REMARK 470 LYS A 88 CG CD CE NZ REMARK 470 LYS A 93 CG CD CE NZ REMARK 470 ARG A 98 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 104 CE NZ REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 GLU A 139 CD OE1 OE2 REMARK 470 LYS A 144 CG CD CE NZ REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 169 CG CD CE NZ REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 187 CG CD CE NZ REMARK 470 GLU A 203 CG CD OE1 OE2 REMARK 470 LYS A 206 CD CE NZ REMARK 470 LYS A 211 CE NZ REMARK 470 ILE A 212 CD1 REMARK 470 LYS A 264 CD CE NZ REMARK 470 LYS A 266 CE NZ REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 VAL A 320 CG1 CG2 REMARK 470 ASN A 325 CG OD1 ND2 REMARK 470 LYS A 350 CE NZ REMARK 470 GLN A 354 CD OE1 NE2 REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 LYS A 366 CG CD CE NZ REMARK 470 LYS A 369 CG CD CE NZ REMARK 470 ASP A 376 CG OD1 OD2 REMARK 470 ARG A 377 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 382 CG CD OE1 OE2 REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 GLU A 386 CG CD OE1 OE2 REMARK 470 ARG A 389 CG CD NE CZ NH1 NH2 REMARK 470 MET A 390 CG SD CE REMARK 470 GLN A 393 CG CD OE1 NE2 REMARK 470 ASP A 394 CG OD1 OD2 REMARK 470 MET A 397 CG SD CE REMARK 470 LEU A 398 CG CD1 CD2 REMARK 470 SER A 401 OG REMARK 470 GLU A 404 CG CD OE1 OE2 REMARK 470 LEU A 411 CG CD1 CD2 REMARK 470 VAL A 414 CG1 CG2 REMARK 470 ILE A 422 CG1 CG2 CD1 REMARK 470 GLU A 423 CG CD OE1 OE2 REMARK 470 GLU A 426 CG CD OE1 OE2 REMARK 470 VAL A 428 CG1 CG2 REMARK 470 LYS A 435 CG CD CE NZ REMARK 470 LEU A 438 CD1 CD2 REMARK 470 GLU A 441 CG CD OE1 OE2 REMARK 470 GLU A 475 CD OE1 OE2 REMARK 470 LYS A 478 CE NZ REMARK 470 LEU A 481 CG CD1 CD2 REMARK 470 VAL A 484 CG1 CG2 REMARK 470 ASP A 485 CG OD1 OD2 REMARK 470 ASP A 489 CG OD1 OD2 REMARK 470 ASP A 495 OD1 OD2 REMARK 470 LYS A 503 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 72 -63.85 -104.60 REMARK 500 ARG A 173 -39.81 80.82 REMARK 500 ASP A 174 42.20 -109.89 REMARK 500 PHE A 269 44.64 -106.80 REMARK 500 GLU A 270 55.34 -106.00 REMARK 500 LEU A 289 34.42 -97.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 451 OD1 REMARK 620 2 ASP A 453 OD1 77.4 REMARK 620 3 SER A 455 OG 97.2 94.1 REMARK 620 4 LYS A 457 O 102.2 172.6 78.5 REMARK 620 5 EDO A 604 O1 160.5 84.3 77.3 95.0 REMARK 620 6 HOH A 731 O 107.5 106.8 150.4 80.4 84.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6LP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JN2 RELATED DB: PDB DBREF 5JMS A 1 507 UNP Q9BJF5 Q9BJF5_TOXGO 1 507 SEQADV 5JMS MET A -17 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS HIS A -16 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS HIS A -15 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS HIS A -14 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS HIS A -13 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS HIS A -12 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS HIS A -11 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS SER A -10 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS SER A -9 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS GLY A -8 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS ARG A -7 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS GLU A -6 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS ASN A -5 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS LEU A -4 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS TYR A -3 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS PHE A -2 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS GLN A -1 UNP Q9BJF5 EXPRESSION TAG SEQADV 5JMS GLY A 0 UNP Q9BJF5 EXPRESSION TAG SEQRES 1 A 525 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 525 LEU TYR PHE GLN GLY MET GLY GLN GLN GLU SER THR LEU SEQRES 3 A 525 GLY GLY ALA ALA GLY GLU PRO ARG SER ARG GLY HIS ALA SEQRES 4 A 525 ALA GLY THR SER GLY GLY PRO GLY ASP HIS LEU HIS ALA SEQRES 5 A 525 THR PRO GLY MET PHE VAL GLN HIS SER THR ALA ILE PHE SEQRES 6 A 525 SER ASP ARG TYR LYS GLY GLN ARG VAL LEU GLY LYS GLY SEQRES 7 A 525 SER PHE GLY GLU VAL ILE LEU CYS LYS ASP LYS ILE THR SEQRES 8 A 525 GLY GLN GLU CYS ALA VAL LYS VAL ILE SER LYS ARG GLN SEQRES 9 A 525 VAL LYS GLN LYS THR ASP LYS GLU SER LEU LEU ARG GLU SEQRES 10 A 525 VAL GLN LEU LEU LYS GLN LEU ASP HIS PRO ASN ILE MET SEQRES 11 A 525 LYS LEU TYR GLU PHE PHE GLU ASP LYS GLY TYR PHE TYR SEQRES 12 A 525 LEU VAL GLY GLU VAL TYR THR GLY GLY GLU LEU PHE ASP SEQRES 13 A 525 GLU ILE ILE SER ARG LYS ARG PHE SER GLU VAL ASP ALA SEQRES 14 A 525 ALA ARG ILE ILE ARG GLN VAL LEU SER GLY ILE THR TYR SEQRES 15 A 525 MET HIS LYS ASN LYS ILE VAL HIS ARG ASP LEU LYS PRO SEQRES 16 A 525 GLU ASN LEU LEU LEU GLU SER LYS SER LYS ASP ALA ASN SEQRES 17 A 525 ILE ARG ILE ILE ASP PHE GLY LEU SER THR HIS PHE GLU SEQRES 18 A 525 ALA SER LYS LYS MET LYS ASP LYS ILE GLY THR ALA TYR SEQRES 19 A 525 TYR ILE ALA PRO GLU VAL LEU HIS GLY THR TYR ASP GLU SEQRES 20 A 525 LYS CYS ASP VAL TRP SER THR GLY VAL ILE LEU TYR ILE SEQRES 21 A 525 LEU LEU SER GLY CYS PRO PRO PHE ASN GLY ALA ASN GLU SEQRES 22 A 525 TYR ASP ILE LEU LYS LYS VAL GLU LYS GLY LYS TYR THR SEQRES 23 A 525 PHE GLU LEU PRO GLN TRP LYS LYS VAL SER GLU SER ALA SEQRES 24 A 525 LYS ASP LEU ILE ARG LYS MET LEU THR TYR VAL PRO SER SEQRES 25 A 525 MET ARG ILE SER ALA ARG ASP ALA LEU ASP HIS GLU TRP SEQRES 26 A 525 ILE GLN THR TYR THR LYS GLU GLN ILE SER VAL ASP VAL SEQRES 27 A 525 PRO SER LEU ASP ASN ALA ILE LEU ASN ILE ARG GLN PHE SEQRES 28 A 525 GLN GLY THR GLN LYS LEU ALA GLN ALA ALA LEU LEU TYR SEQRES 29 A 525 MET GLY SER LYS LEU THR SER GLN ASP GLU THR LYS GLU SEQRES 30 A 525 LEU THR ALA ILE PHE HIS LYS MET ASP LYS ASN GLY ASP SEQRES 31 A 525 GLY GLN LEU ASP ARG ALA GLU LEU ILE GLU GLY TYR LYS SEQRES 32 A 525 GLU LEU MET ARG MET LYS GLY GLN ASP ALA SER MET LEU SEQRES 33 A 525 ASP ALA SER ALA VAL GLU HIS GLU VAL ASP GLN VAL LEU SEQRES 34 A 525 ASP ALA VAL ASP PHE ASP LYS ASN GLY TYR ILE GLU TYR SEQRES 35 A 525 SER GLU PHE VAL THR VAL ALA MET ASP ARG LYS THR LEU SEQRES 36 A 525 LEU SER ARG GLU ARG LEU GLU ARG ALA PHE ARG MET PHE SEQRES 37 A 525 ASP SER ASP ASN SER GLY LYS ILE SER SER THR GLU LEU SEQRES 38 A 525 ALA THR ILE PHE GLY VAL SER ASP VAL ASP SER GLU THR SEQRES 39 A 525 TRP LYS SER VAL LEU SER GLU VAL ASP LYS ASN ASN ASP SEQRES 40 A 525 GLY GLU VAL ASP PHE ASP GLU PHE GLN GLN MET LEU LEU SEQRES 41 A 525 LYS LEU CYS GLY ASN HET 6LP A 601 24 HET CA A 602 1 HET EDO A 603 10 HET EDO A 604 10 HETNAM 6LP N~1~-(4-{2-[(3-CHLOROPHENYL)AMINO]PYRIMIDIN-4- HETNAM 2 6LP YL}PYRIDIN-2-YL)ETHANE-1,2-DIAMINE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 6LP C17 H17 CL N6 FORMUL 3 CA CA 2+ FORMUL 4 EDO 2(C2 H6 O2) FORMUL 6 HOH *48(H2 O) HELIX 1 AA1 ASP A 92 LEU A 106 1 15 HELIX 2 AA2 GLU A 135 ARG A 143 1 9 HELIX 3 AA3 SER A 147 ASN A 168 1 22 HELIX 4 AA4 LYS A 176 GLU A 178 5 3 HELIX 5 AA5 LYS A 207 ILE A 212 1 6 HELIX 6 AA6 ALA A 219 GLY A 225 1 7 HELIX 7 AA7 LYS A 230 GLY A 246 1 17 HELIX 8 AA8 ASN A 254 GLY A 265 1 12 HELIX 9 AA9 LEU A 271 VAL A 277 5 7 HELIX 10 AB1 SER A 278 LEU A 289 1 12 HELIX 11 AB2 SER A 298 ASP A 304 1 7 HELIX 12 AB3 HIS A 305 LYS A 313 1 9 HELIX 13 AB4 LEU A 323 ASP A 368 1 46 HELIX 14 AB5 ASP A 376 GLY A 392 1 17 HELIX 15 AB6 ASP A 399 VAL A 414 1 16 HELIX 16 AB7 GLU A 423 ASP A 451 1 29 HELIX 17 AB8 SER A 460 SER A 470 1 11 HELIX 18 AB9 ASP A 473 ASP A 485 1 13 HELIX 19 AC1 PHE A 494 LEU A 504 1 11 SHEET 1 AA1 5 TYR A 51 LYS A 59 0 SHEET 2 AA1 5 GLU A 64 ASP A 70 -1 O LEU A 67 N ARG A 55 SHEET 3 AA1 5 GLU A 76 SER A 83 -1 O CYS A 77 N CYS A 68 SHEET 4 AA1 5 TYR A 123 GLY A 128 -1 O PHE A 124 N ILE A 82 SHEET 5 AA1 5 LEU A 114 GLU A 119 -1 N PHE A 118 O TYR A 125 SHEET 1 AA2 2 LEU A 180 LEU A 182 0 SHEET 2 AA2 2 ILE A 191 ILE A 193 -1 O ARG A 192 N LEU A 181 SHEET 1 AA3 2 LYS A 457 SER A 459 0 SHEET 2 AA3 2 GLU A 491 ASP A 493 -1 O VAL A 492 N ILE A 458 LINK OD1 ASP A 451 CA CA A 602 1555 1555 2.14 LINK OD1 ASP A 453 CA CA A 602 1555 1555 2.47 LINK OG SER A 455 CA CA A 602 1555 1555 2.34 LINK O LYS A 457 CA CA A 602 1555 1555 2.58 LINK CA CA A 602 O1 EDO A 604 1555 1555 3.13 LINK CA CA A 602 O HOH A 731 1555 1555 2.83 SITE 1 AC1 9 LEU A 57 VAL A 65 LYS A 80 MET A 112 SITE 2 AC1 9 GLU A 129 TYR A 131 ILE A 194 ASP A 195 SITE 3 AC1 9 HOH A 702 SITE 1 AC2 6 ASP A 451 ASP A 453 SER A 455 LYS A 457 SITE 2 AC2 6 EDO A 604 HOH A 731 SITE 1 AC3 4 GLY A 225 TYR A 227 ARG A 448 HOH A 737 SITE 1 AC4 4 ASP A 453 SER A 455 GLU A 491 CA A 602 CRYST1 48.169 72.750 65.276 90.00 98.62 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020760 0.000000 0.003147 0.00000 SCALE2 0.000000 0.013746 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015495 0.00000