HEADER HYDROLASE 29-APR-16 5JMX TITLE CRYSTAL STRUCTURE OF BCII METALLO-BETA-LACTAMASE IN COMPLEX WITH DZ- TITLE 2 305 COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE TYPE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: B2 METALLO-BETA-LACTAMASE,BETA-LACTAMASE II, COMPND 5 CEPHALOSPORINASE,METALLO-BETA-LACTAMASE TYPE II,METALLOTHIOPROTEIN COMPND 6 BETA-LACTAMASE II,PENICILLINASE,ZINC-REQUIRING BETA-LACTAMASE II; COMPND 7 EC: 3.5.2.6; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 1396; SOURCE 4 GENE: BLM; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ANTIMICROBIAL RESISTANCE, METALLO BETA LACTAMASE, INHIBITOR, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.STEPANOVS,M.A.MCDONOUGH,C.J.SCHOFIELD,D.ZHANG,J.BREM REVDAT 3 10-JAN-24 5JMX 1 REMARK REVDAT 2 03-OCT-18 5JMX 1 JRNL REVDAT 1 24-MAY-17 5JMX 0 JRNL AUTH D.ZHANG,M.S.MARKOULIDES,D.STEPANOVS,A.M.RYDZIK,A.EL-HUSSEIN, JRNL AUTH 2 C.BON,J.J.A.G.KAMPS,K.D.UMLAND,P.M.COLLINS,S.T.CAHILL, JRNL AUTH 3 D.Y.WANG,F.VON DELFT,J.BREM,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL STRUCTURE ACTIVITY RELATIONSHIP STUDIES ON RHODANINES AND JRNL TITL 2 DERIVED ENETHIOL INHIBITORS OF METALLO-BETA-LACTAMASES. JRNL REF BIOORG. MED. CHEM. V. 26 2928 2018 JRNL REFN ESSN 1464-3391 JRNL PMID 29655609 JRNL DOI 10.1016/J.BMC.2018.02.043 REMARK 2 REMARK 2 RESOLUTION. 1.44 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.44 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 40041 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.0287 - 3.4705 0.99 2779 143 0.1327 0.1681 REMARK 3 2 3.4705 - 2.7546 1.00 2757 124 0.1320 0.1741 REMARK 3 3 2.7546 - 2.4064 1.00 2717 143 0.1242 0.1667 REMARK 3 4 2.4064 - 2.1864 1.00 2749 127 0.1187 0.1611 REMARK 3 5 2.1864 - 2.0296 1.00 2706 128 0.1193 0.1420 REMARK 3 6 2.0296 - 1.9100 1.00 2723 153 0.1285 0.1874 REMARK 3 7 1.9100 - 1.8143 1.00 2720 143 0.1517 0.1979 REMARK 3 8 1.8143 - 1.7353 1.00 2719 139 0.1685 0.1832 REMARK 3 9 1.7353 - 1.6685 1.00 2711 130 0.1929 0.2288 REMARK 3 10 1.6685 - 1.6109 1.00 2697 146 0.2168 0.2332 REMARK 3 11 1.6109 - 1.5606 1.00 2681 158 0.2344 0.2696 REMARK 3 12 1.5606 - 1.5159 1.00 2688 167 0.2720 0.3053 REMARK 3 13 1.5159 - 1.4760 1.00 2722 145 0.2928 0.3224 REMARK 3 14 1.4760 - 1.4400 1.00 2664 162 0.3345 0.3491 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.72 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 1769 REMARK 3 ANGLE : 1.104 2409 REMARK 3 CHIRALITY : 0.086 285 REMARK 3 PLANARITY : 0.007 304 REMARK 3 DIHEDRAL : 13.753 647 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 37 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.5463 -0.1139 9.5646 REMARK 3 T TENSOR REMARK 3 T11: 0.2339 T22: 0.4116 REMARK 3 T33: 0.1822 T12: -0.0684 REMARK 3 T13: -0.0175 T23: 0.0800 REMARK 3 L TENSOR REMARK 3 L11: 4.7141 L22: 4.8135 REMARK 3 L33: 4.1106 L12: -0.8458 REMARK 3 L13: 0.3810 L23: 0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: 0.3959 S13: 0.3663 REMARK 3 S21: -0.1625 S22: -0.1179 S23: -0.4029 REMARK 3 S31: -0.4632 S32: 0.9461 S33: 0.0521 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 105 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.9021 4.3053 4.0608 REMARK 3 T TENSOR REMARK 3 T11: 0.3182 T22: 0.2828 REMARK 3 T33: 0.1729 T12: -0.0333 REMARK 3 T13: -0.0396 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 5.2742 L22: 4.0512 REMARK 3 L33: 9.8637 L12: -2.4755 REMARK 3 L13: -3.5614 L23: 6.2597 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: 0.1831 S13: 0.2386 REMARK 3 S21: -0.1791 S22: -0.0609 S23: 0.0176 REMARK 3 S31: -0.7365 S32: 0.4899 S33: 0.0635 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 106 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.0586 -1.5492 12.9647 REMARK 3 T TENSOR REMARK 3 T11: 0.1631 T22: 0.1923 REMARK 3 T33: 0.1537 T12: -0.0175 REMARK 3 T13: -0.0259 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 0.2891 L22: 1.7858 REMARK 3 L33: 6.3228 L12: -0.4519 REMARK 3 L13: 0.9128 L23: -0.3471 REMARK 3 S TENSOR REMARK 3 S11: -0.0947 S12: 0.0477 S13: 0.0861 REMARK 3 S21: 0.0674 S22: -0.0237 S23: -0.0359 REMARK 3 S31: -0.2254 S32: 0.4024 S33: 0.1066 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 50.0786 -0.9345 10.7812 REMARK 3 T TENSOR REMARK 3 T11: 0.1966 T22: 0.2180 REMARK 3 T33: 0.1474 T12: 0.0025 REMARK 3 T13: -0.0287 T23: -0.0356 REMARK 3 L TENSOR REMARK 3 L11: 3.3580 L22: 5.8624 REMARK 3 L33: 6.3458 L12: -1.3191 REMARK 3 L13: 1.5036 L23: -5.3427 REMARK 3 S TENSOR REMARK 3 S11: -0.0885 S12: 0.3022 S13: 0.1072 REMARK 3 S21: -0.1563 S22: 0.0243 S23: 0.0053 REMARK 3 S31: -0.1725 S32: -0.4893 S33: 0.0279 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.9232 -3.1265 22.2579 REMARK 3 T TENSOR REMARK 3 T11: 0.1404 T22: 0.2128 REMARK 3 T33: 0.1440 T12: 0.0020 REMARK 3 T13: -0.0025 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 6.3007 L22: 4.6283 REMARK 3 L33: 9.4812 L12: -3.7193 REMARK 3 L13: 0.7763 L23: -0.2670 REMARK 3 S TENSOR REMARK 3 S11: -0.1138 S12: -0.0600 S13: 0.0628 REMARK 3 S21: 0.0850 S22: -0.0031 S23: 0.3299 REMARK 3 S31: -0.5287 S32: -0.7468 S33: 0.1061 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.3973 -11.7222 20.8718 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.1192 REMARK 3 T33: 0.1400 T12: 0.0112 REMARK 3 T13: -0.0179 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 2.3407 L22: 5.0737 REMARK 3 L33: 9.1899 L12: 0.0032 REMARK 3 L13: 0.7134 L23: 3.9528 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: 0.1800 S13: -0.2657 REMARK 3 S21: -0.0426 S22: -0.0773 S23: 0.1785 REMARK 3 S31: 0.5444 S32: 0.0665 S33: 0.0923 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 66.7047 -4.9993 25.7317 REMARK 3 T TENSOR REMARK 3 T11: 0.1411 T22: 0.1604 REMARK 3 T33: 0.1495 T12: 0.0110 REMARK 3 T13: -0.0304 T23: 0.0269 REMARK 3 L TENSOR REMARK 3 L11: 2.7376 L22: 1.9752 REMARK 3 L33: 5.1071 L12: -0.4871 REMARK 3 L13: 0.7210 L23: 0.8235 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: 0.0902 S13: 0.1573 REMARK 3 S21: 0.1382 S22: -0.0048 S23: -0.1561 REMARK 3 S31: -0.0213 S32: 0.3943 S33: -0.0020 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 218 THROUGH 245 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.6150 -10.3694 26.8833 REMARK 3 T TENSOR REMARK 3 T11: 0.1548 T22: 0.2136 REMARK 3 T33: 0.1515 T12: 0.0508 REMARK 3 T13: -0.0378 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.5301 L22: 2.9099 REMARK 3 L33: 4.5494 L12: -0.1731 REMARK 3 L13: -0.3664 L23: 0.0514 REMARK 3 S TENSOR REMARK 3 S11: -0.0949 S12: 0.0466 S13: -0.1905 REMARK 3 S21: 0.0497 S22: 0.0313 S23: -0.1202 REMARK 3 S31: 0.4340 S32: 0.6334 S33: 0.0641 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 246 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 73.5134 -6.0711 32.0007 REMARK 3 T TENSOR REMARK 3 T11: 0.1769 T22: 0.3068 REMARK 3 T33: 0.1837 T12: 0.0267 REMARK 3 T13: -0.0883 T23: -0.0060 REMARK 3 L TENSOR REMARK 3 L11: 7.4675 L22: 6.9744 REMARK 3 L33: 4.9224 L12: -2.6600 REMARK 3 L13: -5.5863 L23: 1.2817 REMARK 3 S TENSOR REMARK 3 S11: -0.0790 S12: -0.2848 S13: -0.0234 REMARK 3 S21: 0.2930 S22: 0.0299 S23: -0.1134 REMARK 3 S31: 0.1546 S32: 0.4191 S33: -0.0099 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220900. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40059 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.440 REMARK 200 RESOLUTION RANGE LOW (A) : 68.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.44 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 1.56700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 4TYT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1MM TCEP, 5MM DZ-305, 50MM HEPES REMARK 280 PH7.5, 100MM NACL, 0.1MM ZNCL2, 0.1M MAGNESIUM FORMATE, 25% PEG REMARK 280 3350, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 26.62500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.62000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 26.62500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.62000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 596 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 31 REMARK 465 GLN A 32 REMARK 465 LYS A 33 REMARK 465 VAL A 34 REMARK 465 GLU A 35 REMARK 465 SER A 63 REMARK 465 PHE A 64 REMARK 465 ASN A 65 REMARK 465 GLY A 66 REMARK 465 GLU A 67 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CB CG CD CE NZ REMARK 470 LYS A 40 CD CE NZ REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 THR A 43 OG1 CG2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 LYS A 92 CD CE NZ REMARK 470 LYS A 164 NZ REMARK 470 ARG A 231 NE CZ NH1 NH2 REMARK 470 GLU A 242 CD OE1 OE2 REMARK 470 LYS A 257 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 143 O HOH A 401 1.93 REMARK 500 O ASN A 217 O HOH A 402 2.01 REMARK 500 O HOH A 414 O HOH A 512 2.04 REMARK 500 O HOH A 414 O HOH A 557 2.11 REMARK 500 O HOH A 548 O HOH A 590 2.18 REMARK 500 OE1 GLU A 224 O HOH A 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 494 O HOH A 541 2756 1.86 REMARK 500 O HOH A 433 O HOH A 516 2856 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 86 147.51 72.12 REMARK 500 SER A 87 -129.13 -92.00 REMARK 500 ALA A 117 38.65 -97.05 REMARK 500 ASP A 245 -157.02 -134.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 594 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A 595 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A 596 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 597 DISTANCE = 7.14 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 99.4 REMARK 620 3 HIS A 179 NE2 101.9 108.0 REMARK 620 4 DZ5 A 304 S13 124.3 112.4 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 198 SG 101.0 REMARK 620 3 HIS A 240 NE2 88.0 103.9 REMARK 620 4 DZ5 A 304 S13 92.7 125.8 129.0 REMARK 620 5 DZ5 A 304 O01 164.5 93.7 83.7 82.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DZ5 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 307 DBREF 5JMX A 31 257 UNP P04190 BLA2_BACCE 31 257 SEQRES 1 A 227 SER GLN LYS VAL GLU LYS THR VAL ILE LYS ASN GLU THR SEQRES 2 A 227 GLY THR ILE SER ILE SER GLN LEU ASN LYS ASN VAL TRP SEQRES 3 A 227 VAL HIS THR GLU LEU GLY SER PHE ASN GLY GLU ALA VAL SEQRES 4 A 227 PRO SER ASN GLY LEU VAL LEU ASN THR SER LYS GLY LEU SEQRES 5 A 227 VAL LEU VAL ASP SER SER TRP ASP ASP LYS LEU THR LYS SEQRES 6 A 227 GLU LEU ILE GLU MET VAL GLU LYS LYS PHE GLN LYS ARG SEQRES 7 A 227 VAL THR ASP VAL ILE ILE THR HIS ALA HIS ALA ASP ARG SEQRES 8 A 227 ILE GLY GLY ILE LYS THR LEU LYS GLU ARG GLY ILE LYS SEQRES 9 A 227 ALA HIS SER THR ALA LEU THR ALA GLU LEU ALA LYS LYS SEQRES 10 A 227 ASN GLY TYR GLU GLU PRO LEU GLY ASP LEU GLN THR VAL SEQRES 11 A 227 THR ASN LEU LYS PHE GLY ASN MET LYS VAL GLU THR PHE SEQRES 12 A 227 TYR PRO GLY LYS GLY HIS THR GLU ASP ASN ILE VAL VAL SEQRES 13 A 227 TRP LEU PRO GLN TYR ASN ILE LEU VAL GLY GLY CYS LEU SEQRES 14 A 227 VAL LYS SER THR SER ALA LYS ASP LEU GLY ASN VAL ALA SEQRES 15 A 227 ASP ALA TYR VAL ASN GLU TRP SER THR SER ILE GLU ASN SEQRES 16 A 227 VAL LEU LYS ARG TYR ARG ASN ILE ASN ALA VAL VAL PRO SEQRES 17 A 227 GLY HIS GLY GLU VAL GLY ASP LYS GLY LEU LEU LEU HIS SEQRES 18 A 227 THR LEU ASP LEU LEU LYS HET ZN A 301 1 HET ZN A 302 1 HET SO4 A 303 5 HET DZ5 A 304 13 HET GOL A 305 6 HET GOL A 306 6 HET GOL A 307 6 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM DZ5 (2Z)-3-(4-FLUOROPHENYL)-2-SULFANYLPROP-2-ENOIC ACID HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 SO4 O4 S 2- FORMUL 5 DZ5 C9 H7 F O2 S FORMUL 6 GOL 3(C3 H8 O3) FORMUL 9 HOH *197(H2 O) HELIX 1 AA1 ASP A 90 GLN A 106 1 17 HELIX 2 AA2 HIS A 118 GLY A 123 1 6 HELIX 3 AA3 GLY A 124 GLY A 132 1 9 HELIX 4 AA4 THR A 138 ASN A 148 1 11 HELIX 5 AA5 CYS A 198 VAL A 200 5 3 HELIX 6 AA6 TYR A 215 TYR A 230 1 16 HELIX 7 AA7 LYS A 246 LEU A 256 1 11 SHEET 1 AA1 7 VAL A 38 LYS A 40 0 SHEET 2 AA1 7 ILE A 46 ASN A 52 -1 O ILE A 48 N ILE A 39 SHEET 3 AA1 7 VAL A 55 LEU A 61 -1 O VAL A 57 N SER A 49 SHEET 4 AA1 7 PRO A 70 THR A 78 -1 O VAL A 75 N TRP A 56 SHEET 5 AA1 7 GLY A 81 VAL A 85 -1 O VAL A 83 N LEU A 76 SHEET 6 AA1 7 VAL A 109 ILE A 113 1 O THR A 110 N LEU A 82 SHEET 7 AA1 7 LYS A 134 HIS A 136 1 O HIS A 136 N VAL A 112 SHEET 1 AA2 5 VAL A 160 PHE A 165 0 SHEET 2 AA2 5 MET A 168 PHE A 173 -1 O VAL A 170 N LEU A 163 SHEET 3 AA2 5 VAL A 185 TRP A 187 -1 O TRP A 187 N GLU A 171 SHEET 4 AA2 5 ILE A 193 GLY A 197 -1 O VAL A 195 N VAL A 186 SHEET 5 AA2 5 ALA A 235 PRO A 238 1 O VAL A 237 N LEU A 194 LINK NE2 HIS A 116 ZN ZN A 302 1555 1555 2.05 LINK ND1 HIS A 118 ZN ZN A 302 1555 1555 2.05 LINK OD2 ASP A 120 ZN ZN A 301 1555 1555 2.14 LINK NE2 HIS A 179 ZN ZN A 302 1555 1555 2.01 LINK SG CYS A 198 ZN ZN A 301 1555 1555 2.27 LINK NE2 HIS A 240 ZN ZN A 301 1555 1555 2.10 LINK ZN ZN A 301 S13 DZ5 A 304 1555 1555 2.38 LINK ZN ZN A 301 O01 DZ5 A 304 1555 1555 2.19 LINK ZN ZN A 302 S13 DZ5 A 304 1555 1555 2.30 SITE 1 AC1 4 ASP A 120 CYS A 198 HIS A 240 DZ5 A 304 SITE 1 AC2 4 HIS A 116 HIS A 118 HIS A 179 DZ5 A 304 SITE 1 AC3 4 LYS A 103 LYS A 169 GLN A 190 HOH A 506 SITE 1 AC4 11 HIS A 118 ASP A 120 HIS A 179 CYS A 198 SITE 2 AC4 11 ASN A 210 ASP A 213 HIS A 240 ZN A 301 SITE 3 AC4 11 ZN A 302 HOH A 437 HOH A 448 SITE 1 AC5 5 THR A 59 ASN A 72 GLY A 241 GLU A 242 SITE 2 AC5 5 VAL A 243 SITE 1 AC6 5 ALA A 117 ASN A 148 THR A 180 ASP A 182 SITE 2 AC6 5 ASP A 213 SITE 1 AC7 6 GLU A 99 GLU A 130 ARG A 131 HOH A 493 SITE 2 AC7 6 HOH A 496 HOH A 527 CRYST1 53.250 61.240 69.050 90.00 93.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018779 0.000000 0.001014 0.00000 SCALE2 0.000000 0.016329 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014503 0.00000