HEADER UNKNOWN FUNCTION 29-APR-16 5JN6 TITLE THE NMR SOLUTION STRUCTURE OF RPA3313 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS (STRAIN ATCC BAA-98 SOURCE 3 / CGA009); SOURCE 4 ORGANISM_TAXID: 258594; SOURCE 5 STRAIN: ATCC BAA-98 / CGA009; SOURCE 6 GENE: RPA3313; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: BL21(DE3) KEYWDS RIBOSOME, PROTEIN-PROTEIN INTERACTION, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 21 AUTHOR J.CATAZARO,A.J.LOWE,R.POWERS,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 14-JUN-23 5JN6 1 REMARK REVDAT 5 11-DEC-19 5JN6 1 REMARK REVDAT 4 20-SEP-17 5JN6 1 COMPND REVDAT 3 04-JAN-17 5JN6 1 JRNL REVDAT 2 16-NOV-16 5JN6 1 JRNL REVDAT 1 11-MAY-16 5JN6 0 JRNL AUTH J.CATAZARO,A.J.LOWE,R.L.CERNY,R.POWERS JRNL TITL THE NMR SOLUTION STRUCTURE AND FUNCTION OF RPA3313: A JRNL TITL 2 PUTATIVE RIBOSOMAL TRANSPORT PROTEIN FROM RHODOPSEUDOMONAS JRNL TITL 3 PALUSTRIS. JRNL REF PROTEINS V. 85 93 2017 JRNL REFN ESSN 1097-0134 JRNL PMID 27802574 JRNL DOI 10.1002/PROT.25201 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.41.1 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JN6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220907. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.6 REMARK 210 IONIC STRENGTH : 80 NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 18 MM NA MES, 80 MM SODIUM REMARK 210 CHLORIDE, 0.1 % SODIUM AZIDE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D 1H-13C NOESY; 3D REMARK 210 HNHA; 3D 1H-15N NOESY; 3D HNCO; REMARK 210 3D HN(CO)CA; 3D HN(CA)CO; 3D REMARK 210 CBCA(CO)NH; 3D CC(CA)NH; 3D REMARK 210 HBHA(CO)NH; 3D CC(CO)NH; 3D REMARK 210 HCC(CO)NH; 3D HCCH-COSY; 3D HCCH- REMARK 210 TOCSY; 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANALYSIS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1000 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-21 REMARK 465 RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 20 94.54 -67.41 REMARK 500 1 PRO A 23 93.60 -43.16 REMARK 500 1 LEU A 65 81.99 64.00 REMARK 500 1 VAL A 67 -77.10 -92.67 REMARK 500 1 ILE A 68 23.54 42.78 REMARK 500 3 GLU A 62 -63.47 -109.28 REMARK 500 3 ASN A 64 -39.04 73.93 REMARK 500 3 LEU A 65 -165.42 60.56 REMARK 500 4 LYS A 3 109.41 -164.41 REMARK 500 4 ASN A 58 110.88 -177.22 REMARK 500 4 LEU A 65 -75.58 -78.56 REMARK 500 5 PRO A 23 102.17 -39.73 REMARK 500 5 GLU A 62 -43.70 -130.06 REMARK 500 6 ASP A 59 -77.49 -65.53 REMARK 500 6 SER A 61 -61.32 -96.96 REMARK 500 7 ASP A 12 28.83 -72.92 REMARK 500 7 ASN A 13 -35.08 -135.35 REMARK 500 7 PRO A 23 108.04 -37.09 REMARK 500 7 GLU A 62 -67.00 67.67 REMARK 500 8 PRO A 23 36.71 -63.13 REMARK 500 8 GLU A 62 -31.78 71.65 REMARK 500 9 ASP A 22 68.82 179.70 REMARK 500 9 SER A 29 143.33 176.55 REMARK 500 9 ASN A 58 -74.24 -74.49 REMARK 500 9 ASP A 59 93.81 70.33 REMARK 500 10 GLU A 62 75.76 56.09 REMARK 500 11 PRO A 23 100.52 -43.00 REMARK 500 11 VAL A 67 -76.95 -99.69 REMARK 500 11 ILE A 68 -64.51 -147.27 REMARK 500 12 ASP A 12 10.16 -69.08 REMARK 500 12 ASN A 13 -30.12 -137.68 REMARK 500 12 PRO A 23 105.53 -49.50 REMARK 500 12 SER A 61 -35.26 -175.21 REMARK 500 12 ASN A 64 -43.94 -160.00 REMARK 500 13 ASP A 12 28.22 -71.44 REMARK 500 13 ASN A 13 -34.98 -137.33 REMARK 500 13 PRO A 23 39.12 -71.50 REMARK 500 13 LEU A 65 -160.73 52.66 REMARK 500 14 VAL A 55 78.26 -119.78 REMARK 500 14 ASP A 59 -54.55 -136.06 REMARK 500 15 SER A 29 -177.04 178.57 REMARK 500 15 SER A 61 73.12 63.39 REMARK 500 16 SER A 29 157.74 174.39 REMARK 500 17 PRO A 23 105.07 -36.52 REMARK 500 17 LEU A 65 -168.56 60.98 REMARK 500 18 PRO A 23 120.56 -39.53 REMARK 500 19 PRO A 23 108.07 -51.29 REMARK 500 19 LEU A 65 -86.87 57.39 REMARK 500 20 SER A 29 146.49 172.07 REMARK 500 20 SER A 61 24.77 -77.06 REMARK 500 REMARK 500 THIS ENTRY HAS 52 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 18 0.09 SIDE CHAIN REMARK 500 5 ARG A 18 0.12 SIDE CHAIN REMARK 500 7 ARG A 18 0.12 SIDE CHAIN REMARK 500 10 ARG A 18 0.11 SIDE CHAIN REMARK 500 14 ARG A 18 0.13 SIDE CHAIN REMARK 500 18 ARG A 18 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30070 RELATED DB: BMRB DBREF 5JN6 A 1 70 UNP Q6N4M4 Q6N4M4_RHOPA 1 70 SEQADV 5JN6 MET A -20 UNP Q6N4M4 INITIATING METHIONINE SEQADV 5JN6 GLY A -19 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 SER A -18 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 SER A -17 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 HIS A -16 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 HIS A -15 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 HIS A -14 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 HIS A -13 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 HIS A -12 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 HIS A -11 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 SER A -10 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 SER A -9 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 GLY A -8 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 ARG A -7 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 GLU A -6 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 ASN A -5 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 LEU A -4 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 TYR A -3 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 PHE A -2 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 GLN A -1 UNP Q6N4M4 EXPRESSION TAG SEQADV 5JN6 GLY A 0 UNP Q6N4M4 EXPRESSION TAG SEQRES 1 A 91 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 91 ARG GLU ASN LEU TYR PHE GLN GLY MET GLY LYS ALA TYR SEQRES 3 A 91 TYR ASP ILE VAL GLY SER ASP ASN ARG TRP GLY ILE ARG SEQRES 4 A 91 HIS ASP ASP ASP PRO THR GLY ASP TYR SER SER LYS GLU SEQRES 5 A 91 ALA ALA PHE GLU ALA ALA CYS ALA ALA ALA SER ASN ALA SEQRES 6 A 91 ILE LYS PHE GLY HIS GLU VAL ARG ILE THR VAL PRO GLY SEQRES 7 A 91 ASN ASP GLY SER GLU THR ASN LEU GLY VAL ILE THR ASN HELIX 1 AA1 SER A 29 GLY A 48 1 20 SHEET 1 AA1 3 TYR A 6 VAL A 9 0 SHEET 2 AA1 3 ARG A 14 HIS A 19 -1 O ARG A 18 N ASP A 7 SHEET 3 AA1 3 GLU A 50 THR A 54 1 O THR A 54 N ILE A 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1