HEADER HYDROLASE 01-MAY-16 5JO3 TITLE PDE5A FOR NAV1.7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CGMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: CATALYTIC DOMAIN CONTAINING RESIDUES 534-858; COMPND 5 SYNONYM: CGMP-BINDING CGMP-SPECIFIC PHOSPHODIESTERASE,CGB-PDE; COMPND 6 EC: 3.1.4.35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE5A, PDE5; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.STORER,J.CHRENCIK REVDAT 3 06-MAR-24 5JO3 1 LINK REVDAT 2 09-AUG-17 5JO3 1 REMARK REVDAT 1 03-MAY-17 5JO3 0 JRNL AUTH A.BELL,A.BENT,P.BRADLEY,P.ERDMAN,M.DE GROOT,R.LEWTHWAITE, JRNL AUTH 2 I.MARSH,S.RANSLEY,N.SCIAMMETTA,R.SMITH,N.SWAIN,R.TORELLA, JRNL AUTH 3 I.STORER JRNL TITL PDE5A FOR NAV1.7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 84.6 REMARK 3 NUMBER OF REFLECTIONS : 43300 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2327 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.49 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1677 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 44.35 REMARK 3 BIN R VALUE (WORKING SET) : 0.1870 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2611 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 367 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.39000 REMARK 3 B33 (A**2) : 0.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.76000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.041 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.049 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2688 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3637 ; 1.137 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 5.013 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 130 ;37.409 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;12.618 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;12.661 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 410 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2013 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1616 ; 0.621 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2609 ; 1.250 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1072 ; 2.270 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1028 ; 3.865 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JO3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220942. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45627 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.8 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05100 REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : 48.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.11500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUSTER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 4K 10% ISOPROPANOL 0.1M HEPES REMARK 280 PH 7.4, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 27.92000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.05000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 27.92000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.05000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B1136 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1175 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU B 534 REMARK 465 GLU B 535 REMARK 465 GLU B 536 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 676 O HOH B 1001 1.92 REMARK 500 CE2 TYR B 676 O HOH B 1013 2.12 REMARK 500 OD2 ASP B 687 O HOH B 1002 2.19 REMARK 500 N ARG B 538 O HOH B 1003 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 1278 O HOH B 1286 2656 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 538 -58.34 76.41 REMARK 500 LYS B 630 -82.71 -85.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1366 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B1367 DISTANCE = 6.43 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 901 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 617 NE2 REMARK 620 2 HIS B 653 NE2 100.6 REMARK 620 3 ASP B 654 OD2 90.2 87.6 REMARK 620 4 ASP B 764 OD2 87.8 88.7 175.5 REMARK 620 5 HOH B1041 O 86.9 167.4 102.5 81.4 REMARK 620 6 HOH B1086 O 164.0 95.4 90.3 92.6 77.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 902 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 654 OD1 REMARK 620 2 HOH B1027 O 79.6 REMARK 620 3 HOH B1029 O 162.0 85.4 REMARK 620 4 HOH B1086 O 92.8 92.7 97.9 REMARK 620 5 HOH B1120 O 86.7 87.0 82.6 179.4 REMARK 620 6 HOH B1172 O 100.8 175.7 93.4 91.6 88.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6LK B 903 DBREF 5JO3 B 534 858 UNP O76074 PDE5A_HUMAN 534 858 SEQADV 5JO3 PRO B 658 UNP O76074 ARG 658 CONFLICT SEQADV 5JO3 SER B 661 UNP O76074 ASN 661 CONFLICT SEQADV 5JO3 GLN B 663 UNP O76074 SER 663 CONFLICT SEQADV 5JO3 PHE B 664 UNP O76074 TYR 664 CONFLICT SEQADV 5JO3 LEU B 665 UNP O76074 ILE 665 CONFLICT SEQADV 5JO3 ILE B 666 UNP O76074 GLN 666 CONFLICT SEQADV 5JO3 ASN B 667 UNP O76074 ARG 667 CONFLICT SEQADV 5JO3 THR B 668 UNP O76074 SER 668 CONFLICT SEQADV 5JO3 ASN B 669 UNP O76074 GLU 669 CONFLICT SEQADV 5JO3 SER B 670 UNP O76074 HIS 670 CONFLICT SEQADV 5JO3 GLU B 671 UNP O76074 PRO 671 CONFLICT SEQADV 5JO3 LEU B 674 UNP O76074 GLN 674 CONFLICT SEQADV 5JO3 MET B 675 UNP O76074 LEU 675 CONFLICT SEQADV 5JO3 ASN B 677 UNP O76074 INSERTION SEQADV 5JO3 ASP B 678 UNP O76074 CYS 677 CONFLICT SEQADV 5JO3 GLU B 679 UNP O76074 HIS 678 CONFLICT SEQADV 5JO3 VAL B 681 UNP O76074 ILE 680 CONFLICT SEQADV 5JO3 LEU B 681A UNP O76074 MET 681 CONFLICT SEQADV 5JO3 GLU B 751 UNP O76074 GLN 751 CONFLICT SEQRES 1 B 326 GLU GLU GLU THR ARG GLU LEU GLN SER LEU ALA ALA ALA SEQRES 2 B 326 VAL VAL PRO SER ALA GLN THR LEU LYS ILE THR ASP PHE SEQRES 3 B 326 SER PHE SER ASP PHE GLU LEU SER ASP LEU GLU THR ALA SEQRES 4 B 326 LEU CYS THR ILE ARG MET PHE THR ASP LEU ASN LEU VAL SEQRES 5 B 326 GLN ASN PHE GLN MET LYS HIS GLU VAL LEU CYS ARG TRP SEQRES 6 B 326 ILE LEU SER VAL LYS LYS ASN TYR ARG LYS ASN VAL ALA SEQRES 7 B 326 TYR HIS ASN TRP ARG HIS ALA PHE ASN THR ALA GLN CYS SEQRES 8 B 326 MET PHE ALA ALA LEU LYS ALA GLY LYS ILE GLN ASN LYS SEQRES 9 B 326 LEU THR ASP LEU GLU ILE LEU ALA LEU LEU ILE ALA ALA SEQRES 10 B 326 LEU SER HIS ASP LEU ASP HIS PRO GLY VAL SER ASN GLN SEQRES 11 B 326 PHE LEU ILE ASN THR ASN SER GLU LEU ALA LEU MET TYR SEQRES 12 B 326 ASN ASP GLU SER VAL LEU GLU HIS HIS HIS PHE ASP GLN SEQRES 13 B 326 CYS LEU MET ILE LEU ASN SER PRO GLY ASN GLN ILE LEU SEQRES 14 B 326 SER GLY LEU SER ILE GLU GLU TYR LYS THR THR LEU LYS SEQRES 15 B 326 ILE ILE LYS GLN ALA ILE LEU ALA THR ASP LEU ALA LEU SEQRES 16 B 326 TYR ILE LYS ARG ARG GLY GLU PHE PHE GLU LEU ILE ARG SEQRES 17 B 326 LYS ASN GLN PHE ASN LEU GLU ASP PRO HIS GLU LYS GLU SEQRES 18 B 326 LEU PHE LEU ALA MET LEU MET THR ALA CYS ASP LEU SER SEQRES 19 B 326 ALA ILE THR LYS PRO TRP PRO ILE GLN GLN ARG ILE ALA SEQRES 20 B 326 GLU LEU VAL ALA THR GLU PHE PHE ASP GLN GLY ASP ARG SEQRES 21 B 326 GLU ARG LYS GLU LEU ASN ILE GLU PRO THR ASP LEU MET SEQRES 22 B 326 ASN ARG GLU LYS LYS ASN LYS ILE PRO SER MET GLN VAL SEQRES 23 B 326 GLY PHE ILE ASP ALA ILE CYS LEU GLN LEU TYR GLU ALA SEQRES 24 B 326 LEU THR HIS VAL SER GLU ASP CYS PHE PRO LEU LEU ASP SEQRES 25 B 326 GLY CYS ARG LYS ASN ARG GLN LYS TRP GLN ALA LEU ALA SEQRES 26 B 326 GLU HET ZN B 901 1 HET ZN B 902 1 HET 6LK B 903 26 HETNAM ZN ZINC ION HETNAM 6LK 1-(5-CHLORO-6-METHOXYPYRIDIN-3-YL)-3-METHYL-N- HETNAM 2 6LK (METHYLSULFONYL)-1H-INDAZOLE-5-CARBOXAMIDE FORMUL 2 ZN 2(ZN 2+) FORMUL 4 6LK C16 H15 CL N4 O4 S FORMUL 5 HOH *367(H2 O) HELIX 1 AA1 ARG B 538 ALA B 546 1 9 HELIX 2 AA2 SER B 550 LYS B 555 1 6 HELIX 3 AA3 SER B 567 LEU B 582 1 16 HELIX 4 AA4 LYS B 591 ASN B 605 1 15 HELIX 5 AA5 ASN B 614 LYS B 630 1 17 HELIX 6 AA6 ILE B 634 LEU B 638 5 5 HELIX 7 AA7 THR B 639 HIS B 653 1 15 HELIX 8 AA8 SER B 661 THR B 668 1 8 HELIX 9 AA9 SER B 670 TYR B 676 1 7 HELIX 10 AB1 SER B 680 ASN B 694 1 16 HELIX 11 AB2 SER B 705 THR B 723 1 19 HELIX 12 AB3 ASP B 724 LYS B 741 1 18 HELIX 13 AB4 ASP B 748 LEU B 765 1 18 HELIX 14 AB5 SER B 766 LYS B 770 5 5 HELIX 15 AB6 PRO B 771 ASN B 798 1 28 HELIX 16 AB7 THR B 802 ASN B 811 5 10 HELIX 17 AB8 LYS B 812 CYS B 825 1 14 HELIX 18 AB9 CYS B 825 SER B 836 1 12 HELIX 19 AC1 CYS B 839 GLU B 858 1 20 LINK NE2 HIS B 617 ZN ZN B 901 1555 1555 2.08 LINK NE2 HIS B 653 ZN ZN B 901 1555 1555 2.13 LINK OD2 ASP B 654 ZN ZN B 901 1555 1555 2.09 LINK OD1 ASP B 654 ZN ZN B 902 1555 1555 2.20 LINK OD2 ASP B 764 ZN ZN B 901 1555 1555 2.11 LINK ZN ZN B 901 O HOH B1041 1555 1555 2.40 LINK ZN ZN B 901 O HOH B1086 1555 1555 2.20 LINK ZN ZN B 902 O HOH B1027 1555 1555 2.19 LINK ZN ZN B 902 O HOH B1029 1555 1555 2.15 LINK ZN ZN B 902 O HOH B1086 1555 1555 2.03 LINK ZN ZN B 902 O HOH B1120 1555 1555 2.22 LINK ZN ZN B 902 O HOH B1172 1555 1555 2.04 SITE 1 AC1 6 HIS B 617 HIS B 653 ASP B 654 ASP B 764 SITE 2 AC1 6 HOH B1041 HOH B1086 SITE 1 AC2 6 ASP B 654 HOH B1027 HOH B1029 HOH B1086 SITE 2 AC2 6 HOH B1120 HOH B1172 SITE 1 AC3 13 LEU B 765 ALA B 767 ILE B 768 GLN B 775 SITE 2 AC3 13 ALA B 779 LEU B 804 MET B 816 GLN B 817 SITE 3 AC3 13 PHE B 820 HOH B1107 HOH B1196 HOH B1270 SITE 4 AC3 13 HOH B1300 CRYST1 55.840 76.100 80.920 90.00 102.56 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017908 0.000000 0.003990 0.00000 SCALE2 0.000000 0.013141 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012661 0.00000