HEADER IMMUNE SYSTEM 01-MAY-16 5JO4 TITLE ANTIBODY FAB FRAGMENT COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: D80 FAB HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: D80 FAB LIGHT CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: G6 FAB HEAVY CHAIN; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: G6 FAB LIGHT CHAIN; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_COMMON: HUMAN; SOURCE 16 ORGANISM_TAXID: 9606; SOURCE 17 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_COMMON: HUMAN; SOURCE 22 ORGANISM_TAXID: 9606; SOURCE 23 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ANTIBODY FAB FRAGMENT COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Z.ZHANG,K.P.PRACHANRONARONG,W.A.MARASCO,C.A.S.SCHIFFER REVDAT 3 27-NOV-19 5JO4 1 REMARK REVDAT 2 10-APR-19 5JO4 1 REMARK REVDAT 1 08-NOV-17 5JO4 0 JRNL AUTH Y.AVNIR,Z.ZHANG,K.PRACHANRONARONG,C.A.SCHIFFER,W.A.MARASCO JRNL TITL STRUCTURAL BASIS OF AN INFLUENZA HEMAGGLUTININ STEM-DIRECTED JRNL TITL 2 ANTIBODY RETAINING THE G6 IDIOTYPE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.53 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2037 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.53 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 33149 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.940 REMARK 3 FREE R VALUE TEST SET COUNT : 1968 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.4002 - 6.0945 0.99 2397 152 0.1769 0.2201 REMARK 3 2 6.0945 - 4.8386 1.00 2315 144 0.1583 0.1978 REMARK 3 3 4.8386 - 4.2273 1.00 2272 140 0.1405 0.1809 REMARK 3 4 4.2273 - 3.8410 0.99 2308 147 0.1741 0.2273 REMARK 3 5 3.8410 - 3.5658 0.99 2276 143 0.2047 0.2361 REMARK 3 6 3.5658 - 3.3556 0.99 2244 148 0.2144 0.2782 REMARK 3 7 3.3556 - 3.1876 0.99 2238 135 0.2203 0.2662 REMARK 3 8 3.1876 - 3.0488 0.98 2236 139 0.2331 0.2955 REMARK 3 9 3.0488 - 2.9315 0.97 2201 139 0.2286 0.2844 REMARK 3 10 2.9315 - 2.8303 0.96 2182 139 0.2453 0.3335 REMARK 3 11 2.8303 - 2.7418 0.95 2178 131 0.2361 0.2867 REMARK 3 12 2.7418 - 2.6635 0.95 2151 136 0.2457 0.3022 REMARK 3 13 2.6635 - 2.5933 0.94 2138 141 0.2609 0.3635 REMARK 3 14 2.5933 - 2.5301 0.91 2045 134 0.2845 0.3288 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6689 REMARK 3 ANGLE : 1.359 9105 REMARK 3 CHIRALITY : 0.054 1032 REMARK 3 PLANARITY : 0.006 1160 REMARK 3 DIHEDRAL : 12.998 4001 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JO4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33988 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.530 REMARK 200 RESOLUTION RANGE LOW (A) : 50.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NH4SO4, 12% PEG 3350, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.58000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.58000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8830 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 140 REMARK 465 THR A 141 REMARK 465 SER A 142 REMARK 465 GLY A 143 REMARK 465 GLY A 144 REMARK 465 ASP A 227 REMARK 465 LYS A 228 REMARK 465 LYS C 222 REMARK 465 ASN D 210 REMARK 465 ARG D 211 REMARK 465 GLY D 212 REMARK 465 GLU D 213 REMARK 465 CYS D 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 308 O HOH C 325 1.92 REMARK 500 O SER D 208 O HOH D 301 1.98 REMARK 500 OH TYR B 92 O HOH B 401 2.02 REMARK 500 O HOH A 323 O HOH C 310 2.05 REMARK 500 NE ARG B 18 O HOH B 402 2.06 REMARK 500 OG SER A 122 O HOH A 301 2.07 REMARK 500 OH TYR A 104 O HOH A 302 2.07 REMARK 500 NZ LYS B 32 O HOH B 403 2.07 REMARK 500 NE2 GLN C 175 OG SER C 181 2.09 REMARK 500 OG1 THR A 120 O HOH A 303 2.10 REMARK 500 OE2 GLU D 165 O HOH D 302 2.10 REMARK 500 O HOH C 313 O HOH C 314 2.12 REMARK 500 O LEU A 180 O HOH A 304 2.12 REMARK 500 NH1 ARG B 78 O HOH B 404 2.12 REMARK 500 O HOH A 351 O HOH A 380 2.14 REMARK 500 NE2 GLN A 1 O HOH A 305 2.14 REMARK 500 O HOH B 413 O HOH B 472 2.16 REMARK 500 O TYR D 186 OH TYR D 192 2.18 REMARK 500 O SER B 132 O HOH B 405 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 455 O HOH C 329 4747 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 12 C - N - CA ANGL. DEV. = 9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 14 158.67 -48.88 REMARK 500 SER A 16 -168.98 -76.62 REMARK 500 THR A 31 106.92 -59.65 REMARK 500 MET A 57 -82.94 63.30 REMARK 500 LYS A 66 -38.44 -34.84 REMARK 500 SER A 108 -130.21 -143.80 REMARK 500 SER A 138 106.93 -160.15 REMARK 500 ASP A 154 71.89 49.87 REMARK 500 SER A 166 37.27 39.16 REMARK 500 SER A 183 31.32 -77.97 REMARK 500 PRO A 212 4.72 -57.70 REMARK 500 ASN A 214 47.26 37.34 REMARK 500 LYS B 32 0.52 -55.92 REMARK 500 ALA B 52 -32.65 75.81 REMARK 500 PRO C 12 -104.00 -14.83 REMARK 500 ALA C 14 -175.87 -60.48 REMARK 500 ASN C 101 -137.89 159.65 REMARK 500 ALA C 103 -160.75 171.95 REMARK 500 PRO C 123 -167.80 -62.49 REMARK 500 SER C 124 66.57 -156.02 REMARK 500 SER C 134 -54.28 -135.53 REMARK 500 THR C 135 -81.38 -108.04 REMARK 500 SER C 136 68.37 -104.99 REMARK 500 THR C 139 -150.58 -113.82 REMARK 500 ASP C 148 71.71 63.21 REMARK 500 PRO C 151 -169.68 -101.50 REMARK 500 SER C 160 68.53 39.01 REMARK 500 SER C 177 -9.47 91.44 REMARK 500 SER C 191 -77.11 -73.42 REMARK 500 ASN C 201 57.68 -108.49 REMARK 500 SER C 219 36.32 72.99 REMARK 500 VAL D 110 -106.71 43.04 REMARK 500 ALA D 111 126.48 71.32 REMARK 500 ASN D 138 72.55 45.37 REMARK 500 ASN D 158 32.16 -150.06 REMARK 500 SER D 162 114.92 -170.58 REMARK 500 LYS D 169 -72.34 -91.98 REMARK 500 HIS D 189 -78.59 -156.63 REMARK 500 LYS D 190 -28.99 -28.91 REMARK 500 PRO D 204 100.03 -47.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY C 100 ASN C 101 -31.22 REMARK 500 ALA C 103 LEU C 104 148.75 REMARK 500 HIS D 189 LYS D 190 -143.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 301 DBREF 5JO4 A 1 228 PDB 5JO4 5JO4 1 228 DBREF 5JO4 B 1 215 PDB 5JO4 5JO4 1 215 DBREF 5JO4 C 1 222 PDB 5JO4 5JO4 1 222 DBREF 5JO4 D 1 214 PDB 5JO4 5JO4 1 214 SEQRES 1 A 228 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 A 228 PRO GLY SER SER VAL LYS VAL SER CYS ARG ALA SER GLY SEQRES 3 A 228 GLY THR GLY GLY THR PHE SER ALA TYR ALA PHE THR TRP SEQRES 4 A 228 VAL ARG GLN ALA PRO GLY GLN GLY LEU GLU TRP MET GLY SEQRES 5 A 228 GLY ILE THR GLY MET PHE GLY THR ALA ASN TYR ALA GLN SEQRES 6 A 228 LYS PHE GLN GLY ARG VAL THR ILE THR ALA ASP GLU LEU SEQRES 7 A 228 THR SER THR ALA TYR MET GLU LEU SER SER LEU THR SER SEQRES 8 A 228 GLU ASP THR ALA LEU TYR TYR CYS ALA ARG GLY LEU TYR SEQRES 9 A 228 TYR TYR GLU SER SER LEU ASP TYR TRP GLY GLN GLY THR SEQRES 10 A 228 LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 A 228 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 A 228 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 A 228 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 A 228 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 A 228 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 A 228 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 A 228 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL SEQRES 18 A 228 GLU PRO LYS SER CYS ASP LYS SEQRES 1 B 215 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 B 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 B 215 GLN SER LEU SER SER LYS TYR LEU ALA TRP TYR GLN GLN SEQRES 4 B 215 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 B 215 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 B 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 B 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR SER CYS GLN GLN SEQRES 8 B 215 TYR ASP GLY VAL PRO ARG THR PHE GLY GLN GLY THR THR SEQRES 9 B 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 B 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 B 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 B 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 B 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 B 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 B 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 B 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 B 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 C 222 GLN LEU VAL GLN SER GLY ALA GLU VAL VAL LYS PRO GLY SEQRES 2 C 222 ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY TYR THR SEQRES 3 C 222 PHE THR SER TYR TRP MET HIS TRP VAL LYS GLN ALA PRO SEQRES 4 C 222 GLY GLN GLY LEU GLU TRP ILE GLY ALA VAL SER PRO GLY SEQRES 5 C 222 ASN SER ASP THR SER TYR ASN GLU LYS PHE LYS GLY LYS SEQRES 6 C 222 ALA THR LEU THR VAL ASP LYS SER ALA SER THR ALA TYR SEQRES 7 C 222 MET GLU LEU SER SER LEU ARG SER GLU ASP THR ALA VAL SEQRES 8 C 222 TYR TYR CYS THR ARG SER ARG TYR GLY ASN ASN ALA LEU SEQRES 9 C 222 ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SER SEQRES 10 C 222 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 C 222 SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY SEQRES 12 C 222 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 C 222 SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR SEQRES 14 C 222 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 C 222 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 C 222 GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 C 222 THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS ASP SEQRES 18 C 222 LYS SEQRES 1 D 214 ASP ILE GLN LEU THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 D 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 D 214 GLN GLY ILE SER SER ASN ILE VAL TRP LEU GLN GLN LYS SEQRES 4 D 214 PRO GLY LYS ALA PRO LYS GLY LEU ILE TYR HIS GLY THR SEQRES 5 D 214 ASN LEU GLU SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 D 214 GLY SER GLY THR ASP TYR THR LEU THR ILE SER SER LEU SEQRES 7 D 214 GLU PRO GLU ASP PHE ALA THR TYR TYR CYS VAL GLN TYR SEQRES 8 D 214 SER GLN PHE PRO PRO THR PHE GLY GLN GLY THR LYS LEU SEQRES 9 D 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 D 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 D 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 D 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 D 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 D 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 D 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 D 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 D 214 PHE ASN ARG GLY GLU CYS HET SO4 B 301 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *222(H2 O) HELIX 1 AA1 THR A 31 TYR A 35 5 5 HELIX 2 AA2 GLN A 65 GLN A 68 5 4 HELIX 3 AA3 GLU A 77 THR A 79 5 3 HELIX 4 AA4 THR A 90 THR A 94 5 5 HELIX 5 AA5 SER A 166 ALA A 168 5 3 HELIX 6 AA6 PRO A 195 LEU A 199 5 5 HELIX 7 AA7 LYS A 211 ASN A 214 5 4 HELIX 8 AA8 SER B 30 LYS B 32 5 3 HELIX 9 AA9 GLU B 80 PHE B 84 5 5 HELIX 10 AB1 SER B 122 SER B 128 1 7 HELIX 11 AB2 LYS B 184 LYS B 189 1 6 HELIX 12 AB3 THR C 26 THR C 28 5 3 HELIX 13 AB4 GLU C 60 LYS C 63 5 4 HELIX 14 AB5 ARG C 85 THR C 89 5 5 HELIX 15 AB6 TRP C 158 ALA C 162 5 5 HELIX 16 AB7 GLU D 79 PHE D 83 5 5 HELIX 17 AB8 SER D 121 SER D 127 1 7 HELIX 18 AB9 LYS D 183 GLU D 187 1 5 SHEET 1 AA1 4 VAL A 2 GLN A 6 0 SHEET 2 AA1 4 VAL A 18 GLY A 26 -1 O ARG A 23 N VAL A 5 SHEET 3 AA1 4 THR A 81 LEU A 86 -1 O LEU A 86 N VAL A 18 SHEET 4 AA1 4 VAL A 71 ASP A 76 -1 N ASP A 76 O THR A 81 SHEET 1 AA2 6 GLU A 10 LYS A 12 0 SHEET 2 AA2 6 THR A 117 VAL A 121 1 O THR A 120 N LYS A 12 SHEET 3 AA2 6 ALA A 95 ARG A 101 -1 N TYR A 97 O THR A 117 SHEET 4 AA2 6 PHE A 37 GLN A 42 -1 N THR A 38 O ALA A 100 SHEET 5 AA2 6 GLU A 49 ILE A 54 -1 O GLY A 52 N TRP A 39 SHEET 6 AA2 6 ALA A 61 TYR A 63 -1 O ASN A 62 N GLY A 53 SHEET 1 AA3 4 GLU A 10 LYS A 12 0 SHEET 2 AA3 4 THR A 117 VAL A 121 1 O THR A 120 N LYS A 12 SHEET 3 AA3 4 ALA A 95 ARG A 101 -1 N TYR A 97 O THR A 117 SHEET 4 AA3 4 TYR A 112 TRP A 113 -1 O TYR A 112 N ARG A 101 SHEET 1 AA4 4 SER A 130 LEU A 134 0 SHEET 2 AA4 4 ALA A 146 TYR A 155 -1 O GLY A 149 N LEU A 134 SHEET 3 AA4 4 TYR A 186 VAL A 194 -1 O VAL A 194 N ALA A 146 SHEET 4 AA4 4 VAL A 173 THR A 175 -1 N HIS A 174 O VAL A 191 SHEET 1 AA5 4 SER A 130 LEU A 134 0 SHEET 2 AA5 4 ALA A 146 TYR A 155 -1 O GLY A 149 N LEU A 134 SHEET 3 AA5 4 TYR A 186 VAL A 194 -1 O VAL A 194 N ALA A 146 SHEET 4 AA5 4 VAL A 179 LEU A 180 -1 N VAL A 179 O SER A 187 SHEET 1 AA6 3 THR A 161 TRP A 164 0 SHEET 2 AA6 3 TYR A 204 HIS A 210 -1 O ASN A 207 N SER A 163 SHEET 3 AA6 3 THR A 215 VAL A 221 -1 O VAL A 221 N TYR A 204 SHEET 1 AA7 3 LEU B 4 SER B 7 0 SHEET 2 AA7 3 ALA B 19 LEU B 29 -1 O ARG B 24 N THR B 5 SHEET 3 AA7 3 PHE B 63 ILE B 76 -1 O ILE B 76 N ALA B 19 SHEET 1 AA8 6 THR B 10 LEU B 13 0 SHEET 2 AA8 6 THR B 103 ILE B 107 1 O GLU B 106 N LEU B 11 SHEET 3 AA8 6 VAL B 86 GLN B 91 -1 N TYR B 87 O THR B 103 SHEET 4 AA8 6 LEU B 34 GLN B 39 -1 N GLN B 39 O VAL B 86 SHEET 5 AA8 6 ARG B 46 TYR B 50 -1 O ARG B 46 N GLN B 38 SHEET 6 AA8 6 SER B 54 ARG B 55 -1 O SER B 54 N TYR B 50 SHEET 1 AA9 4 THR B 10 LEU B 13 0 SHEET 2 AA9 4 THR B 103 ILE B 107 1 O GLU B 106 N LEU B 11 SHEET 3 AA9 4 VAL B 86 GLN B 91 -1 N TYR B 87 O THR B 103 SHEET 4 AA9 4 THR B 98 PHE B 99 -1 O THR B 98 N GLN B 91 SHEET 1 AB1 4 SER B 115 PHE B 119 0 SHEET 2 AB1 4 THR B 130 PHE B 140 -1 O VAL B 134 N PHE B 119 SHEET 3 AB1 4 TYR B 174 SER B 183 -1 O LEU B 182 N ALA B 131 SHEET 4 AB1 4 SER B 160 VAL B 164 -1 N GLN B 161 O THR B 179 SHEET 1 AB2 3 LYS B 146 VAL B 151 0 SHEET 2 AB2 3 VAL B 192 THR B 198 -1 O ALA B 194 N LYS B 150 SHEET 3 AB2 3 VAL B 206 ASN B 211 -1 O VAL B 206 N VAL B 197 SHEET 1 AB3 4 LEU C 2 GLN C 4 0 SHEET 2 AB3 4 VAL C 16 ALA C 22 -1 O LYS C 21 N VAL C 3 SHEET 3 AB3 4 THR C 76 LEU C 81 -1 O MET C 79 N VAL C 18 SHEET 4 AB3 4 ALA C 66 ASP C 71 -1 N ASP C 71 O THR C 76 SHEET 1 AB4 6 GLU C 8 VAL C 10 0 SHEET 2 AB4 6 THR C 111 VAL C 115 1 O LEU C 112 N GLU C 8 SHEET 3 AB4 6 ALA C 90 ARG C 98 -1 N ALA C 90 O VAL C 113 SHEET 4 AB4 6 TYR C 30 ALA C 38 -1 N HIS C 33 O THR C 95 SHEET 5 AB4 6 GLY C 42 VAL C 49 -1 O GLU C 44 N LYS C 36 SHEET 6 AB4 6 THR C 56 TYR C 58 -1 O SER C 57 N ALA C 48 SHEET 1 AB5 4 VAL C 125 LEU C 128 0 SHEET 2 AB5 4 ALA C 140 TYR C 149 -1 O LEU C 145 N PHE C 126 SHEET 3 AB5 4 LEU C 179 VAL C 188 -1 O VAL C 188 N ALA C 140 SHEET 4 AB5 4 VAL C 167 THR C 169 -1 N HIS C 168 O VAL C 185 SHEET 1 AB6 4 VAL C 125 LEU C 128 0 SHEET 2 AB6 4 ALA C 140 TYR C 149 -1 O LEU C 145 N PHE C 126 SHEET 3 AB6 4 LEU C 179 VAL C 188 -1 O VAL C 188 N ALA C 140 SHEET 4 AB6 4 VAL C 173 GLN C 175 -1 N GLN C 175 O LEU C 179 SHEET 1 AB7 2 ILE C 199 HIS C 204 0 SHEET 2 AB7 2 THR C 209 ARG C 214 -1 O LYS C 213 N CYS C 200 SHEET 1 AB8 4 LEU D 4 SER D 7 0 SHEET 2 AB8 4 VAL D 19 ALA D 25 -1 O THR D 22 N SER D 7 SHEET 3 AB8 4 ASP D 70 ILE D 75 -1 O ILE D 75 N VAL D 19 SHEET 4 AB8 4 PHE D 62 SER D 67 -1 N SER D 63 O THR D 74 SHEET 1 AB9 6 SER D 10 ALA D 13 0 SHEET 2 AB9 6 THR D 102 ILE D 106 1 O GLU D 105 N LEU D 11 SHEET 3 AB9 6 THR D 85 GLN D 90 -1 N TYR D 86 O THR D 102 SHEET 4 AB9 6 ILE D 33 GLN D 38 -1 N LEU D 36 O TYR D 87 SHEET 5 AB9 6 LYS D 45 TYR D 49 -1 O LEU D 47 N TRP D 35 SHEET 6 AB9 6 ASN D 53 LEU D 54 -1 O ASN D 53 N TYR D 49 SHEET 1 AC1 4 SER D 10 ALA D 13 0 SHEET 2 AC1 4 THR D 102 ILE D 106 1 O GLU D 105 N LEU D 11 SHEET 3 AC1 4 THR D 85 GLN D 90 -1 N TYR D 86 O THR D 102 SHEET 4 AC1 4 THR D 97 PHE D 98 -1 O THR D 97 N GLN D 90 SHEET 1 AC2 4 SER D 114 PHE D 118 0 SHEET 2 AC2 4 THR D 129 PHE D 139 -1 O LEU D 135 N PHE D 116 SHEET 3 AC2 4 TYR D 173 SER D 182 -1 O LEU D 181 N ALA D 130 SHEET 4 AC2 4 SER D 159 GLN D 160 -1 N GLN D 160 O THR D 178 SHEET 1 AC3 4 ALA D 153 LEU D 154 0 SHEET 2 AC3 4 LYS D 145 VAL D 150 -1 N VAL D 150 O ALA D 153 SHEET 3 AC3 4 TYR D 192 THR D 197 -1 O GLU D 195 N GLN D 147 SHEET 4 AC3 4 VAL D 205 LYS D 207 -1 O VAL D 205 N VAL D 196 SSBOND 1 CYS A 22 CYS A 99 1555 1555 2.02 SSBOND 2 CYS A 150 CYS A 206 1555 1555 2.03 SSBOND 3 CYS B 23 CYS B 89 1555 1555 2.10 SSBOND 4 CYS B 135 CYS B 195 1555 1555 2.03 SSBOND 5 CYS C 20 CYS C 94 1555 1555 2.07 SSBOND 6 CYS C 144 CYS C 200 1555 1555 2.03 SSBOND 7 CYS D 23 CYS D 88 1555 1555 2.12 SSBOND 8 CYS D 134 CYS D 194 1555 1555 2.03 CISPEP 1 SER A 138 LYS A 139 0 -6.94 CISPEP 2 PHE A 156 PRO A 157 0 -13.60 CISPEP 3 GLU A 158 PRO A 159 0 1.78 CISPEP 4 SER A 225 CYS A 226 0 0.08 CISPEP 5 SER B 7 PRO B 8 0 -7.78 CISPEP 6 VAL B 95 PRO B 96 0 -6.70 CISPEP 7 TYR B 141 PRO B 142 0 5.86 CISPEP 8 ASN C 102 ALA C 103 0 6.26 CISPEP 9 LYS C 133 SER C 134 0 -3.42 CISPEP 10 SER C 134 THR C 135 0 -4.48 CISPEP 11 GLY C 138 THR C 139 0 -1.43 CISPEP 12 PHE C 150 PRO C 151 0 -12.01 CISPEP 13 GLU C 152 PRO C 153 0 5.68 CISPEP 14 SER D 7 PRO D 8 0 -3.97 CISPEP 15 PHE D 94 PRO D 95 0 -4.82 CISPEP 16 TYR D 140 PRO D 141 0 -5.14 CISPEP 17 LYS D 188 HIS D 189 0 -12.58 SITE 1 AC1 6 LYS B 40 ARG B 46 PRO B 60 ARG B 62 SITE 2 AC1 6 GLU B 82 HOH B 412 CRYST1 143.160 50.780 139.740 90.00 90.90 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006985 0.000000 0.000110 0.00000 SCALE2 0.000000 0.019693 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007157 0.00000