HEADER HYDROLASE 02-MAY-16 5JOC TITLE CRYSTAL STRUCTURE OF THE S61A MUTANT OF AMPC BER COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: AMPC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMPC BER, CLASS C BETA-LACTAMASE, S61A MUTATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.H.NA,Y.J.AN,S.S.CHA REVDAT 2 08-NOV-23 5JOC 1 REMARK REVDAT 1 03-MAY-17 5JOC 0 JRNL AUTH J.H.NA,S.S.CHA JRNL TITL STRUCTURAL BASIS FOR THE EXTENDED SUBSTRATE SPECTRUM OF AMPC JRNL TITL 2 BER AND STRUCTURE-GUIDED DISCOVERY OF THE INHIBITION JRNL TITL 3 ACTIVITY OF CITRATE AGAINST THE CLASS C BETA-LACTAMASES AMPC JRNL TITL 4 BER AND CMY-10. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 72 976 2016 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 27487828 JRNL DOI 10.1107/S2059798316011311 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 104247 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5514 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7244 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 379 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5469 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 269 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.45000 REMARK 3 B22 (A**2) : 0.45000 REMARK 3 B33 (A**2) : -1.46000 REMARK 3 B12 (A**2) : 0.23000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.085 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.156 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5679 ; 0.023 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5343 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7757 ; 2.118 ; 1.948 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12287 ; 0.984 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 695 ; 6.839 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;36.813 ;24.463 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 874 ;14.685 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;18.641 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 833 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6451 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1309 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2792 ; 2.570 ; 2.427 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2791 ; 2.571 ; 2.427 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3483 ; 3.418 ; 3.617 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3484 ; 3.417 ; 3.618 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2887 ; 4.137 ; 2.942 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2885 ; 4.116 ; 2.940 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4274 ; 6.195 ; 4.222 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6709 ; 7.331 ;20.866 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6620 ; 7.344 ;20.759 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JOC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220957. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 109761 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1F1G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1 M CITRIC ACID, NAOH REMARK 280 PH 3.5, MICROBATCH, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.81750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 22.81750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.81750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 GLY A 283 REMARK 465 SER A 284 REMARK 465 GLY A 285 REMARK 465 ASN A 286 REMARK 465 LYS A 287 REMARK 465 ILE A 288 REMARK 465 ALA A 289 REMARK 465 LEU A 290 REMARK 465 ALA A 291 REMARK 465 ALA A 292 REMARK 465 MET B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 GLY B 283 REMARK 465 SER B 284 REMARK 465 GLY B 285 REMARK 465 ASN B 286 REMARK 465 LYS B 287 REMARK 465 ILE B 288 REMARK 465 ALA B 289 REMARK 465 LEU B 290 REMARK 465 ALA B 291 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 4 CG CD OE1 NE2 REMARK 470 GLN B 4 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 201 CA GLU A 202 1.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 202 N GLU A 202 CA 0.159 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 201 O - C - N ANGL. DEV. = -14.6 DEGREES REMARK 500 GLU A 202 C - N - CA ANGL. DEV. = -30.7 DEGREES REMARK 500 ASP A 214 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASN A 276 CB - CA - C ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG B 130 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 145 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG B 201 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 214 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 229 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 229 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 175 -59.09 -121.95 REMARK 500 TYR A 218 18.55 -160.58 REMARK 500 ALA A 306 122.37 -36.21 REMARK 500 ALA A 317 105.38 -160.36 REMARK 500 GLN B 3 -73.88 91.79 REMARK 500 VAL B 175 -60.10 -127.56 REMARK 500 TYR B 218 12.88 -163.71 REMARK 500 ASN B 340 43.15 -106.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 634 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH B 635 DISTANCE = 5.90 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 401 DBREF 5JOC A 2 360 UNP A7TUE6 A7TUE6_ECOLX 21 379 DBREF 5JOC B 2 360 UNP A7TUE6 A7TUE6_ECOLX 21 379 SEQADV 5JOC MET A -5 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC HIS A -4 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC HIS A -3 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC HIS A -2 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC HIS A -1 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC HIS A 0 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC HIS A 1 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC ALA A 61 UNP A7TUE6 SER 80 ENGINEERED MUTATION SEQADV 5JOC MET B -5 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC HIS B -4 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC HIS B -3 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC HIS B -2 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC HIS B -1 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC HIS B 0 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC HIS B 1 UNP A7TUE6 EXPRESSION TAG SEQADV 5JOC ALA B 61 UNP A7TUE6 SER 80 ENGINEERED MUTATION SEQRES 1 A 366 MET HIS HIS HIS HIS HIS HIS PRO GLN GLN ILE ASN ASP SEQRES 2 A 366 ILE VAL HIS ARG THR ILE THR PRO LEU ILE GLU GLN GLN SEQRES 3 A 366 LYS ILE PRO GLY MET ALA VAL ALA VAL ILE TYR GLN GLY SEQRES 4 A 366 LYS PRO TYR TYR PHE THR TRP GLY TYR ALA ASP ILE ALA SEQRES 5 A 366 LYS LYS GLN PRO VAL THR GLN GLN THR LEU PHE GLU LEU SEQRES 6 A 366 GLY ALA VAL SER LYS THR PHE THR GLY VAL LEU GLY GLY SEQRES 7 A 366 ASP ALA ILE ALA ARG GLY GLU ILE LYS LEU SER ASP PRO SEQRES 8 A 366 ALA THR LYS TYR TRP PRO GLU LEU THR ALA LYS GLN TRP SEQRES 9 A 366 ASN GLY ILE THR LEU LEU HIS LEU ALA THR TYR THR ALA SEQRES 10 A 366 GLY GLY LEU PRO LEU GLN VAL PRO ASP GLU VAL LYS SER SEQRES 11 A 366 SER SER ASP LEU LEU ARG PHE TYR GLN ASN TRP GLN PRO SEQRES 12 A 366 ALA TRP ALA PRO GLY THR GLN ARG LEU TYR ALA ASN SER SEQRES 13 A 366 SER ILE GLY LEU PHE GLY ALA LEU ALA VAL LYS PRO SER SEQRES 14 A 366 GLY LEU SER PHE GLU GLN ALA MET GLN THR ARG VAL PHE SEQRES 15 A 366 GLN PRO LEU LYS LEU ASN HIS THR TRP ILE ASN VAL PRO SEQRES 16 A 366 PRO PRO GLU GLU LYS ASN TYR ALA TRP GLY TYR ARG GLU SEQRES 17 A 366 GLY LYS ALA VAL HIS VAL SER PRO GLY ALA LEU ASP ALA SEQRES 18 A 366 GLU ALA TYR GLY VAL LYS SER THR ILE GLU ASP MET ALA SEQRES 19 A 366 ARG TRP VAL ARG SER ASN MET ASN PRO ARG ASP ILE ASN SEQRES 20 A 366 ASP LYS THR LEU GLN GLN GLY ILE GLN LEU ALA GLN SER SEQRES 21 A 366 ARG TYR TRP GLN THR GLY ASP MET TYR GLN GLY LEU GLY SEQRES 22 A 366 TRP GLU MET LEU ASP TRP PRO VAL ASN PRO ASP SER ILE SEQRES 23 A 366 ILE ASN GLY SER GLY ASN LYS ILE ALA LEU ALA ALA ALA SEQRES 24 A 366 ALA HIS PRO VAL LYS ALA ILE THR PRO PRO THR PRO ALA SEQRES 25 A 366 VAL ARG ALA SER TRP VAL HIS LYS THR GLY ALA THR GLY SEQRES 26 A 366 GLY PHE GLY SER TYR VAL ALA PHE ILE PRO GLU LYS GLU SEQRES 27 A 366 LEU GLY ILE VAL MET LEU ALA ASN LYS ASN TYR PRO ASN SEQRES 28 A 366 PRO ALA ARG VAL ALA ALA ALA TRP GLN ILE LEU ASN ALA SEQRES 29 A 366 LEU GLN SEQRES 1 B 366 MET HIS HIS HIS HIS HIS HIS PRO GLN GLN ILE ASN ASP SEQRES 2 B 366 ILE VAL HIS ARG THR ILE THR PRO LEU ILE GLU GLN GLN SEQRES 3 B 366 LYS ILE PRO GLY MET ALA VAL ALA VAL ILE TYR GLN GLY SEQRES 4 B 366 LYS PRO TYR TYR PHE THR TRP GLY TYR ALA ASP ILE ALA SEQRES 5 B 366 LYS LYS GLN PRO VAL THR GLN GLN THR LEU PHE GLU LEU SEQRES 6 B 366 GLY ALA VAL SER LYS THR PHE THR GLY VAL LEU GLY GLY SEQRES 7 B 366 ASP ALA ILE ALA ARG GLY GLU ILE LYS LEU SER ASP PRO SEQRES 8 B 366 ALA THR LYS TYR TRP PRO GLU LEU THR ALA LYS GLN TRP SEQRES 9 B 366 ASN GLY ILE THR LEU LEU HIS LEU ALA THR TYR THR ALA SEQRES 10 B 366 GLY GLY LEU PRO LEU GLN VAL PRO ASP GLU VAL LYS SER SEQRES 11 B 366 SER SER ASP LEU LEU ARG PHE TYR GLN ASN TRP GLN PRO SEQRES 12 B 366 ALA TRP ALA PRO GLY THR GLN ARG LEU TYR ALA ASN SER SEQRES 13 B 366 SER ILE GLY LEU PHE GLY ALA LEU ALA VAL LYS PRO SER SEQRES 14 B 366 GLY LEU SER PHE GLU GLN ALA MET GLN THR ARG VAL PHE SEQRES 15 B 366 GLN PRO LEU LYS LEU ASN HIS THR TRP ILE ASN VAL PRO SEQRES 16 B 366 PRO PRO GLU GLU LYS ASN TYR ALA TRP GLY TYR ARG GLU SEQRES 17 B 366 GLY LYS ALA VAL HIS VAL SER PRO GLY ALA LEU ASP ALA SEQRES 18 B 366 GLU ALA TYR GLY VAL LYS SER THR ILE GLU ASP MET ALA SEQRES 19 B 366 ARG TRP VAL ARG SER ASN MET ASN PRO ARG ASP ILE ASN SEQRES 20 B 366 ASP LYS THR LEU GLN GLN GLY ILE GLN LEU ALA GLN SER SEQRES 21 B 366 ARG TYR TRP GLN THR GLY ASP MET TYR GLN GLY LEU GLY SEQRES 22 B 366 TRP GLU MET LEU ASP TRP PRO VAL ASN PRO ASP SER ILE SEQRES 23 B 366 ILE ASN GLY SER GLY ASN LYS ILE ALA LEU ALA ALA ALA SEQRES 24 B 366 ALA HIS PRO VAL LYS ALA ILE THR PRO PRO THR PRO ALA SEQRES 25 B 366 VAL ARG ALA SER TRP VAL HIS LYS THR GLY ALA THR GLY SEQRES 26 B 366 GLY PHE GLY SER TYR VAL ALA PHE ILE PRO GLU LYS GLU SEQRES 27 B 366 LEU GLY ILE VAL MET LEU ALA ASN LYS ASN TYR PRO ASN SEQRES 28 B 366 PRO ALA ARG VAL ALA ALA ALA TRP GLN ILE LEU ASN ALA SEQRES 29 B 366 LEU GLN HET CIT A 400 13 HET CIT A 401 13 HET CIT B 400 13 HET CIT B 401 13 HETNAM CIT CITRIC ACID FORMUL 3 CIT 4(C6 H8 O7) FORMUL 7 HOH *269(H2 O) HELIX 1 AA1 PRO A 2 LYS A 21 1 20 HELIX 2 AA2 VAL A 62 ARG A 77 1 16 HELIX 3 AA3 PRO A 85 TYR A 89 5 5 HELIX 4 AA4 ALA A 95 ASN A 99 5 5 HELIX 5 AA5 THR A 102 THR A 108 1 7 HELIX 6 AA6 SER A 124 TRP A 135 1 12 HELIX 7 AA7 ALA A 148 VAL A 160 1 13 HELIX 8 AA8 LYS A 161 GLY A 164 5 4 HELIX 9 AA9 SER A 166 VAL A 175 1 10 HELIX 10 AB1 PRO A 189 TYR A 196 5 8 HELIX 11 AB2 LEU A 213 TYR A 218 1 6 HELIX 12 AB3 THR A 223 ASN A 236 1 14 HELIX 13 AB4 PRO A 237 ILE A 240 5 4 HELIX 14 AB5 ASP A 242 GLN A 253 1 12 HELIX 15 AB6 ASN A 276 ASN A 282 1 7 HELIX 16 AB7 PRO A 329 GLU A 332 5 4 HELIX 17 AB8 PRO A 344 LEU A 359 1 16 HELIX 18 AB9 GLN B 3 LYS B 21 1 19 HELIX 19 AC1 VAL B 62 ARG B 77 1 16 HELIX 20 AC2 PRO B 85 TYR B 89 5 5 HELIX 21 AC3 ALA B 95 ASN B 99 5 5 HELIX 22 AC4 THR B 102 THR B 108 1 7 HELIX 23 AC5 SER B 124 TRP B 135 1 12 HELIX 24 AC6 ALA B 148 VAL B 160 1 13 HELIX 25 AC7 LYS B 161 GLY B 164 5 4 HELIX 26 AC8 SER B 166 VAL B 175 1 10 HELIX 27 AC9 PRO B 189 TYR B 196 5 8 HELIX 28 AD1 LEU B 213 TYR B 218 1 6 HELIX 29 AD2 THR B 223 ASN B 236 1 14 HELIX 30 AD3 PRO B 237 ILE B 240 5 4 HELIX 31 AD4 ASP B 242 GLN B 253 1 12 HELIX 32 AD5 ASN B 276 ASN B 282 1 7 HELIX 33 AD6 PRO B 329 GLU B 332 5 4 HELIX 34 AD7 PRO B 344 GLN B 360 1 17 SHEET 1 AA110 GLN A 49 PRO A 50 0 SHEET 2 AA110 LYS A 34 ASP A 44 -1 N ASP A 44 O GLN A 49 SHEET 3 AA110 GLY A 24 TYR A 31 -1 N TYR A 31 O LYS A 34 SHEET 4 AA110 LEU A 333 ALA A 339 -1 O GLY A 334 N ILE A 30 SHEET 5 AA110 GLY A 322 ILE A 328 -1 N TYR A 324 O MET A 337 SHEET 6 AA110 SER A 310 GLY A 316 -1 N VAL A 312 O PHE A 327 SHEET 7 AA110 GLU A 269 ASP A 272 -1 N GLU A 269 O HIS A 313 SHEET 8 AA110 MET A 262 GLN A 264 -1 N TYR A 263 O MET A 270 SHEET 9 AA110 ARG A 255 THR A 259 -1 N THR A 259 O MET A 262 SHEET 10 AA110 LYS A 298 THR A 304 -1 O LYS A 298 N GLN A 258 SHEET 1 AA2 2 PHE A 57 GLU A 58 0 SHEET 2 AA2 2 LYS A 221 SER A 222 -1 O SER A 222 N PHE A 57 SHEET 1 AA3 2 GLN A 144 ARG A 145 0 SHEET 2 AA3 2 HIS A 295 PRO A 296 -1 O HIS A 295 N ARG A 145 SHEET 1 AA4 2 GLY A 199 TYR A 200 0 SHEET 2 AA4 2 ALA A 205 VAL A 206 -1 O VAL A 206 N GLY A 199 SHEET 1 AA510 GLN B 49 PRO B 50 0 SHEET 2 AA510 LYS B 34 ASP B 44 -1 N ASP B 44 O GLN B 49 SHEET 3 AA510 GLY B 24 TYR B 31 -1 N VAL B 27 O PHE B 38 SHEET 4 AA510 LEU B 333 ALA B 339 -1 O GLY B 334 N ILE B 30 SHEET 5 AA510 GLY B 322 ILE B 328 -1 N ALA B 326 O ILE B 335 SHEET 6 AA510 SER B 310 GLY B 316 -1 N VAL B 312 O PHE B 327 SHEET 7 AA510 GLU B 269 ASP B 272 -1 N LEU B 271 O TRP B 311 SHEET 8 AA510 MET B 262 GLN B 264 -1 N TYR B 263 O MET B 270 SHEET 9 AA510 ARG B 255 THR B 259 -1 N THR B 259 O MET B 262 SHEET 10 AA510 LYS B 298 THR B 304 -1 O LYS B 298 N GLN B 258 SHEET 1 AA6 3 PHE B 57 GLU B 58 0 SHEET 2 AA6 3 LYS B 221 SER B 222 -1 O SER B 222 N PHE B 57 SHEET 3 AA6 3 THR B 184 TRP B 185 -1 N TRP B 185 O LYS B 221 SHEET 1 AA7 2 GLN B 144 ARG B 145 0 SHEET 2 AA7 2 HIS B 295 PRO B 296 -1 O HIS B 295 N ARG B 145 SHEET 1 AA8 2 GLY B 199 ARG B 201 0 SHEET 2 AA8 2 LYS B 204 VAL B 206 -1 O VAL B 206 N GLY B 199 CISPEP 1 TRP A 273 PRO A 274 0 5.92 CISPEP 2 THR A 301 PRO A 302 0 -16.56 CISPEP 3 TRP B 273 PRO B 274 0 8.96 CISPEP 4 THR B 301 PRO B 302 0 -5.92 SITE 1 AC1 16 GLY A 60 ALA A 61 LYS A 64 GLN A 117 SITE 2 AC1 16 TYR A 147 ASN A 149 TYR A 218 GLY A 316 SITE 3 AC1 16 ALA A 317 THR A 318 HOH A 508 HOH A 510 SITE 4 AC1 16 HOH A 532 HOH A 535 HOH A 597 HOH A 601 SITE 1 AC2 7 ARG A 145 TYR A 147 GLU A 269 LYS A 314 SITE 2 AC2 7 THR A 315 HOH A 604 HOH A 617 SITE 1 AC3 13 GLY B 60 ALA B 61 LYS B 64 GLN B 117 SITE 2 AC3 13 TYR B 147 ASN B 149 TYR B 218 GLY B 316 SITE 3 AC3 13 ALA B 317 THR B 318 HOH B 517 HOH B 551 SITE 4 AC3 13 HOH B 563 SITE 1 AC4 6 ARG B 145 TYR B 147 GLU B 269 LYS B 314 SITE 2 AC4 6 THR B 315 ASN B 345 CRYST1 207.208 207.208 45.635 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004826 0.002786 0.000000 0.00000 SCALE2 0.000000 0.005573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021913 0.00000