data_5JOO # _entry.id 5JOO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5JOO pdb_00005joo 10.2210/pdb5joo/pdb WWPDB D_1000220932 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB 'Influenza A M2 wild type TM domain at low pH in the lipidic cubic phase under cryo diffraction conditions' 4QKC unspecified PDB 'Influenza A M2 wild type TM domain at low pH in the lipidic cubic phase under room temperature diffraction conditions' 4QKM unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5JOO _pdbx_database_status.recvd_initial_deposition_date 2016-05-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Thomaston, J.L.' 1 ? 'Woldeyes, R.A.' 2 ? 'Fraser, J.S.' 3 ? 'DeGrado, W.F.' 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Proc. Natl. Acad. Sci. U.S.A.' _citation.journal_id_ASTM PNASA6 _citation.journal_id_CSD 0040 _citation.journal_id_ISSN 1091-6490 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 114 _citation.language ? _citation.page_first 13357 _citation.page_last 13362 _citation.title 'XFEL structures of the influenza M2 proton channel: Room temperature water networks and insights into proton conduction.' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1073/pnas.1705624114 _citation.pdbx_database_id_PubMed 28835537 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thomaston, J.L.' 1 ? primary 'Woldeyes, R.A.' 2 ? primary 'Nakane, T.' 3 ? primary 'Yamashita, A.' 4 ? primary 'Tanaka, T.' 5 ? primary 'Koiwai, K.' 6 ? primary 'Brewster, A.S.' 7 ? primary 'Barad, B.A.' 8 ? primary 'Chen, Y.' 9 ? primary 'Lemmin, T.' 10 ? primary 'Uervirojnangkoorn, M.' 11 ? primary 'Arima, T.' 12 ? primary 'Kobayashi, J.' 13 ? primary 'Masuda, T.' 14 ? primary 'Suzuki, M.' 15 ? primary 'Sugahara, M.' 16 ? primary 'Sauter, N.K.' 17 ? primary 'Tanaka, R.' 18 ? primary 'Nureki, O.' 19 ? primary 'Tono, K.' 20 ? primary 'Joti, Y.' 21 ? primary 'Nango, E.' 22 ? primary 'Iwata, S.' 23 ? primary 'Yumoto, F.' 24 ? primary 'Fraser, J.S.' 25 ? primary 'DeGrado, W.F.' 26 ? # _cell.entry_id 5JOO _cell.length_a 30.051 _cell.length_b 30.051 _cell.length_c 67.399 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JOO _symmetry.space_group_name_H-M 'I 4' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Matrix protein 2' 2754.340 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 25 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)SSDPLVVAASIIGILHLILWILDRL(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XSSDPLVVAASIIGILHLILWILDRLX _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 SER n 1 3 SER n 1 4 ASP n 1 5 PRO n 1 6 LEU n 1 7 VAL n 1 8 VAL n 1 9 ALA n 1 10 ALA n 1 11 SER n 1 12 ILE n 1 13 ILE n 1 14 GLY n 1 15 ILE n 1 16 LEU n 1 17 HIS n 1 18 LEU n 1 19 ILE n 1 20 LEU n 1 21 TRP n 1 22 ILE n 1 23 LEU n 1 24 ASP n 1 25 ARG n 1 26 LEU n 1 27 NH2 n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 27 _pdbx_entity_src_syn.organism_scientific 'Influenza A virus (A/Hickox/1940(H1N1))' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 383543 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code M2_I40A0 _struct_ref.pdbx_db_accession Q0HD59 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code SSDPLVVAASIIGILHLILWILDRL _struct_ref.pdbx_align_begin 22 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5JOO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 26 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q0HD59 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 46 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 22 _struct_ref_seq.pdbx_auth_seq_align_end 46 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 5JOO ACE A 1 ? UNP Q0HD59 ? ? acetylation 21 1 1 5JOO NH2 A 27 ? UNP Q0HD59 ? ? amidation 47 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5JOO _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 55.47 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'LIPIDIC CUBIC PHASE' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M CaCl2, 0.1 M MES pH 5.5, 44% PEG 400, monoolein, octyl glucoside' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type MPCCD _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2015-11-27 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1587 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'FREE ELECTRON LASER' _diffrn_source.target ? _diffrn_source.type 'SACLA BEAMLINE BL3' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.1587 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL3 _diffrn_source.pdbx_synchrotron_site SACLA # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5JOO _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.40 _reflns.d_resolution_low 27.45 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 5922 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.0 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 622.87 _reflns.pdbx_Rmerge_I_obs 0.6776 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value 0.1172 _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 4.81 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.954 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.40 _reflns_shell.d_res_low 1.42 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 0.15 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.9858 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 177.22 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 5JOO _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 5401 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 21.249 _refine.ls_d_res_high 1.413 _refine.ls_percent_reflns_obs 94.06 _refine.ls_R_factor_obs 0.2077 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2043 _refine.ls_R_factor_R_free 0.2373 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.28 _refine.ls_number_reflns_R_free 555 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model 4QKM _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.22 _refine.pdbx_overall_phase_error 30.71 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 196 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 25 _refine_hist.number_atoms_total 224 _refine_hist.d_res_high 1.413 _refine_hist.d_res_low 21.249 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.003 ? ? 213 'X-RAY DIFFRACTION' ? f_angle_d 0.622 ? ? 273 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 9.111 ? ? 69 'X-RAY DIFFRACTION' ? f_chiral_restr 0.044 ? ? 37 'X-RAY DIFFRACTION' ? f_plane_restr 0.003 ? ? 31 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all 'X-RAY DIFFRACTION' . 1.4135 1.5557 961 0.3396 76.00 0.3419 . . 119 . . 'X-RAY DIFFRACTION' . 1.5557 1.7807 1289 0.2786 100.00 0.3094 . . 142 . . 'X-RAY DIFFRACTION' . 1.7807 2.2431 1291 0.1837 100.00 0.2027 . . 146 . . 'X-RAY DIFFRACTION' . 2.2431 21.2519 1305 0.1783 100.00 0.2218 . . 148 . . # _struct.entry_id 5JOO _struct.title 'XFEL structure of influenza A M2 wild type TM domain at low pH in the lipidic cubic phase at room temperature' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5JOO _struct_keywords.text 'XFEL, influenza, proton channel, room temperature, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 2 ? E N N 4 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id ASP _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 4 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id LEU _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 26 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ASP _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 24 _struct_conf.end_auth_comp_id LEU _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 46 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ACE 1 C ? ? ? 1_555 A SER 2 N ? ? A ACE 21 A SER 22 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale2 covale both ? A LEU 26 C ? ? ? 1_555 A NH2 27 N ? ? A LEU 46 A NH2 47 1_555 ? ? ? ? ? ? ? 1.329 ? ? metalc1 metalc ? ? A SER 2 O ? ? ? 1_555 D CA . CA ? ? A SER 22 A CA 103 1_555 ? ? ? ? ? ? ? 2.378 ? ? metalc2 metalc ? ? A SER 2 O ? ? ? 1_555 D CA . CA ? ? A SER 22 A CA 103 3_545 ? ? ? ? ? ? ? 2.369 ? ? metalc3 metalc ? ? A ASP 4 OD1 ? ? ? 1_555 B CA . CA ? ? A ASP 24 A CA 101 1_555 ? ? ? ? ? ? ? 2.359 ? ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 101 A HOH 202 1_555 ? ? ? ? ? ? ? 2.392 ? ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 101 A HOH 207 1_555 ? ? ? ? ? ? ? 2.396 ? ? metalc6 metalc ? ? D CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 103 A HOH 204 1_555 ? ? ? ? ? ? ? 2.400 ? ? metalc7 metalc ? ? D CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 103 A HOH 204 2_645 ? ? ? ? ? ? ? 2.389 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CA 101 ? 3 'binding site for residue CA A 101' AC2 Software A CL 102 ? 4 'binding site for residue CL A 102' AC3 Software A CA 103 ? 8 'binding site for residue CA A 103' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASP A 4 ? ASP A 24 . ? 1_555 ? 2 AC1 3 HOH E . ? HOH A 202 . ? 1_555 ? 3 AC1 3 HOH E . ? HOH A 207 . ? 1_555 ? 4 AC2 4 SER A 3 ? SER A 23 . ? 3_545 ? 5 AC2 4 SER A 3 ? SER A 23 . ? 1_555 ? 6 AC2 4 SER A 3 ? SER A 23 . ? 2_645 ? 7 AC2 4 SER A 3 ? SER A 23 . ? 4_655 ? 8 AC3 8 SER A 2 ? SER A 22 . ? 3_545 ? 9 AC3 8 SER A 2 ? SER A 22 . ? 4_655 ? 10 AC3 8 SER A 2 ? SER A 22 . ? 2_645 ? 11 AC3 8 SER A 2 ? SER A 22 . ? 1_555 ? 12 AC3 8 HOH E . ? HOH A 204 . ? 2_645 ? 13 AC3 8 HOH E . ? HOH A 204 . ? 4_655 ? 14 AC3 8 HOH E . ? HOH A 204 . ? 3_545 ? 15 AC3 8 HOH E . ? HOH A 204 . ? 1_555 ? # _atom_sites.entry_id 5JOO _atom_sites.fract_transf_matrix[1][1] 0.033276 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.033276 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014837 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA CL H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 21 21 ACE ACE A . n A 1 2 SER 2 22 22 SER SER A . n A 1 3 SER 3 23 23 SER SER A . n A 1 4 ASP 4 24 24 ASP ASP A . n A 1 5 PRO 5 25 25 PRO PRO A . n A 1 6 LEU 6 26 26 LEU LEU A . n A 1 7 VAL 7 27 27 VAL VAL A . n A 1 8 VAL 8 28 28 VAL VAL A . n A 1 9 ALA 9 29 29 ALA ALA A . n A 1 10 ALA 10 30 30 ALA ALA A . n A 1 11 SER 11 31 31 SER SER A . n A 1 12 ILE 12 32 32 ILE ILE A . n A 1 13 ILE 13 33 33 ILE ILE A . n A 1 14 GLY 14 34 34 GLY GLY A . n A 1 15 ILE 15 35 35 ILE ILE A . n A 1 16 LEU 16 36 36 LEU LEU A . n A 1 17 HIS 17 37 37 HIS HIS A . n A 1 18 LEU 18 38 38 LEU LEU A . n A 1 19 ILE 19 39 39 ILE ILE A . n A 1 20 LEU 20 40 40 LEU LEU A . n A 1 21 TRP 21 41 41 TRP TRP A . n A 1 22 ILE 22 42 42 ILE ILE A . n A 1 23 LEU 23 43 43 LEU LEU A . n A 1 24 ASP 24 44 44 ASP ASP A . n A 1 25 ARG 25 45 45 ARG ARG A . n A 1 26 LEU 26 46 46 LEU LEU A . n A 1 27 NH2 27 47 47 NH2 NH2 A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 101 1 CA CA A . C 3 CL 1 102 1 CL CL A . D 2 CA 1 103 1 CA CA A . E 4 HOH 1 201 17 HOH HOH A . E 4 HOH 2 202 15 HOH HOH A . E 4 HOH 3 203 13 HOH HOH A . E 4 HOH 4 204 9 HOH HOH A . E 4 HOH 5 205 14 HOH HOH A . E 4 HOH 6 206 19 HOH HOH A . E 4 HOH 7 207 12 HOH HOH A . E 4 HOH 8 208 24 HOH HOH A . E 4 HOH 9 209 6 HOH HOH A . E 4 HOH 10 210 5 HOH HOH A . E 4 HOH 11 211 10 HOH HOH A . E 4 HOH 12 212 7 HOH HOH A . E 4 HOH 13 213 3 HOH HOH A . E 4 HOH 14 214 1 HOH HOH A . E 4 HOH 15 215 25 HOH HOH A . E 4 HOH 16 216 2 HOH HOH A . E 4 HOH 17 217 16 HOH HOH A . E 4 HOH 18 218 11 HOH HOH A . E 4 HOH 19 219 18 HOH HOH A . E 4 HOH 20 220 4 HOH HOH A . E 4 HOH 21 221 8 HOH HOH A . E 4 HOH 22 222 21 HOH HOH A . E 4 HOH 23 223 20 HOH HOH A . E 4 HOH 24 224 23 HOH HOH A . E 4 HOH 25 225 22 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5600 ? 1 MORE -80 ? 1 'SSA (A^2)' 6990 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_645 -x+1,-y-1,z -1.0000000000 0.0000000000 0.0000000000 30.0510000000 0.0000000000 -1.0000000000 0.0000000000 -30.0510000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_545 -y,x-1,z 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 -30.0510000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_655 y+1,-x,z 0.0000000000 1.0000000000 0.0000000000 30.0510000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CL 102 ? C CL . 2 1 A CA 103 ? D CA . 3 1 A HOH 214 ? E HOH . 4 1 A HOH 218 ? E HOH . 5 1 A HOH 220 ? E HOH . 6 1 A HOH 221 ? E HOH . 7 1 A HOH 225 ? E HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A SER 2 ? A SER 22 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? A SER 2 ? A SER 22 ? 1_555 0.0 ? 2 O ? A SER 2 ? A SER 22 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? E HOH . ? A HOH 204 ? 1_555 70.0 ? 3 O ? A SER 2 ? A SER 22 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? E HOH . ? A HOH 204 ? 1_555 70.0 ? 4 O ? A SER 2 ? A SER 22 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? E HOH . ? A HOH 204 ? 2_645 146.4 ? 5 O ? A SER 2 ? A SER 22 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? E HOH . ? A HOH 204 ? 2_645 146.4 ? 6 O ? E HOH . ? A HOH 204 ? 1_555 CA ? D CA . ? A CA 103 ? 1_555 O ? E HOH . ? A HOH 204 ? 2_645 107.4 ? 7 OD1 ? A ASP 4 ? A ASP 24 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? E HOH . ? A HOH 202 ? 1_555 74.0 ? 8 OD1 ? A ASP 4 ? A ASP 24 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? E HOH . ? A HOH 207 ? 1_555 76.9 ? 9 O ? E HOH . ? A HOH 202 ? 1_555 CA ? B CA . ? A CA 101 ? 1_555 O ? E HOH . ? A HOH 207 ? 1_555 128.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-08-02 2 'Structure model' 1 1 2017-08-23 3 'Structure model' 1 2 2017-09-06 4 'Structure model' 1 3 2018-01-03 5 'Structure model' 1 4 2019-12-25 6 'Structure model' 1 5 2023-08-16 7 'Structure model' 1 6 2023-09-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Database references' 5 5 'Structure model' 'Author supporting evidence' 6 6 'Structure model' 'Data collection' 7 6 'Structure model' 'Database references' 8 6 'Structure model' 'Derived calculations' 9 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 3 'Structure model' citation_author 4 3 'Structure model' diffrn_source 5 4 'Structure model' citation 6 5 'Structure model' pdbx_audit_support 7 6 'Structure model' chem_comp_atom 8 6 'Structure model' chem_comp_bond 9 6 'Structure model' database_2 10 6 'Structure model' pdbx_related_exp_data_set 11 6 'Structure model' pdbx_struct_conn_angle 12 6 'Structure model' struct_conn 13 7 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_ASTM' 4 2 'Structure model' '_citation.journal_id_CSD' 5 2 'Structure model' '_citation.journal_id_ISSN' 6 2 'Structure model' '_citation.pdbx_database_id_DOI' 7 2 'Structure model' '_citation.title' 8 2 'Structure model' '_citation.year' 9 3 'Structure model' '_citation.journal_abbrev' 10 3 'Structure model' '_citation.pdbx_database_id_PubMed' 11 3 'Structure model' '_citation.title' 12 3 'Structure model' '_diffrn_source.pdbx_synchrotron_beamline' 13 3 'Structure model' '_diffrn_source.pdbx_synchrotron_site' 14 4 'Structure model' '_citation.journal_volume' 15 4 'Structure model' '_citation.page_first' 16 4 'Structure model' '_citation.page_last' 17 5 'Structure model' '_pdbx_audit_support.funding_organization' 18 6 'Structure model' '_database_2.pdbx_DOI' 19 6 'Structure model' '_database_2.pdbx_database_accession' 20 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 21 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 22 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 23 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 24 6 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 25 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 26 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 27 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 28 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 29 6 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 30 6 'Structure model' '_pdbx_struct_conn_angle.value' 31 6 'Structure model' '_struct_conn.conn_type_id' 32 6 'Structure model' '_struct_conn.id' 33 6 'Structure model' '_struct_conn.pdbx_dist_value' 34 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 35 6 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 36 6 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 37 6 'Structure model' '_struct_conn.ptnr1_label_asym_id' 38 6 'Structure model' '_struct_conn.ptnr1_label_atom_id' 39 6 'Structure model' '_struct_conn.ptnr1_label_comp_id' 40 6 'Structure model' '_struct_conn.ptnr1_label_seq_id' 41 6 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 42 6 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 43 6 'Structure model' '_struct_conn.ptnr2_label_asym_id' 44 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' 45 6 'Structure model' '_struct_conn.ptnr2_label_comp_id' 46 6 'Structure model' '_struct_conn.ptnr2_label_seq_id' 47 6 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.9_1692 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? cctbx.xfel ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? cctbx.prime ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O B A HOH 220 ? 6.04 . 2 1 O ? A HOH 221 ? 6.13 . 3 1 O ? A HOH 222 ? 8.05 . 4 1 O ? A HOH 223 ? 10.08 . 5 1 O ? A HOH 224 ? 12.50 . 6 1 O ? A HOH 225 ? 13.11 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ACE C C N N 1 ACE O O N N 2 ACE CH3 C N N 3 ACE H H N N 4 ACE H1 H N N 5 ACE H2 H N N 6 ACE H3 H N N 7 ALA N N N N 8 ALA CA C N S 9 ALA C C N N 10 ALA O O N N 11 ALA CB C N N 12 ALA OXT O N N 13 ALA H H N N 14 ALA H2 H N N 15 ALA HA H N N 16 ALA HB1 H N N 17 ALA HB2 H N N 18 ALA HB3 H N N 19 ALA HXT H N N 20 ARG N N N N 21 ARG CA C N S 22 ARG C C N N 23 ARG O O N N 24 ARG CB C N N 25 ARG CG C N N 26 ARG CD C N N 27 ARG NE N N N 28 ARG CZ C N N 29 ARG NH1 N N N 30 ARG NH2 N N N 31 ARG OXT O N N 32 ARG H H N N 33 ARG H2 H N N 34 ARG HA H N N 35 ARG HB2 H N N 36 ARG HB3 H N N 37 ARG HG2 H N N 38 ARG HG3 H N N 39 ARG HD2 H N N 40 ARG HD3 H N N 41 ARG HE H N N 42 ARG HH11 H N N 43 ARG HH12 H N N 44 ARG HH21 H N N 45 ARG HH22 H N N 46 ARG HXT H N N 47 ASP N N N N 48 ASP CA C N S 49 ASP C C N N 50 ASP O O N N 51 ASP CB C N N 52 ASP CG C N N 53 ASP OD1 O N N 54 ASP OD2 O N N 55 ASP OXT O N N 56 ASP H H N N 57 ASP H2 H N N 58 ASP HA H N N 59 ASP HB2 H N N 60 ASP HB3 H N N 61 ASP HD2 H N N 62 ASP HXT H N N 63 CA CA CA N N 64 CL CL CL N N 65 GLY N N N N 66 GLY CA C N N 67 GLY C C N N 68 GLY O O N N 69 GLY OXT O N N 70 GLY H H N N 71 GLY H2 H N N 72 GLY HA2 H N N 73 GLY HA3 H N N 74 GLY HXT H N N 75 HIS N N N N 76 HIS CA C N S 77 HIS C C N N 78 HIS O O N N 79 HIS CB C N N 80 HIS CG C Y N 81 HIS ND1 N Y N 82 HIS CD2 C Y N 83 HIS CE1 C Y N 84 HIS NE2 N Y N 85 HIS OXT O N N 86 HIS H H N N 87 HIS H2 H N N 88 HIS HA H N N 89 HIS HB2 H N N 90 HIS HB3 H N N 91 HIS HD1 H N N 92 HIS HD2 H N N 93 HIS HE1 H N N 94 HIS HE2 H N N 95 HIS HXT H N N 96 HOH O O N N 97 HOH H1 H N N 98 HOH H2 H N N 99 ILE N N N N 100 ILE CA C N S 101 ILE C C N N 102 ILE O O N N 103 ILE CB C N S 104 ILE CG1 C N N 105 ILE CG2 C N N 106 ILE CD1 C N N 107 ILE OXT O N N 108 ILE H H N N 109 ILE H2 H N N 110 ILE HA H N N 111 ILE HB H N N 112 ILE HG12 H N N 113 ILE HG13 H N N 114 ILE HG21 H N N 115 ILE HG22 H N N 116 ILE HG23 H N N 117 ILE HD11 H N N 118 ILE HD12 H N N 119 ILE HD13 H N N 120 ILE HXT H N N 121 LEU N N N N 122 LEU CA C N S 123 LEU C C N N 124 LEU O O N N 125 LEU CB C N N 126 LEU CG C N N 127 LEU CD1 C N N 128 LEU CD2 C N N 129 LEU OXT O N N 130 LEU H H N N 131 LEU H2 H N N 132 LEU HA H N N 133 LEU HB2 H N N 134 LEU HB3 H N N 135 LEU HG H N N 136 LEU HD11 H N N 137 LEU HD12 H N N 138 LEU HD13 H N N 139 LEU HD21 H N N 140 LEU HD22 H N N 141 LEU HD23 H N N 142 LEU HXT H N N 143 NH2 N N N N 144 NH2 HN1 H N N 145 NH2 HN2 H N N 146 PRO N N N N 147 PRO CA C N S 148 PRO C C N N 149 PRO O O N N 150 PRO CB C N N 151 PRO CG C N N 152 PRO CD C N N 153 PRO OXT O N N 154 PRO H H N N 155 PRO HA H N N 156 PRO HB2 H N N 157 PRO HB3 H N N 158 PRO HG2 H N N 159 PRO HG3 H N N 160 PRO HD2 H N N 161 PRO HD3 H N N 162 PRO HXT H N N 163 SER N N N N 164 SER CA C N S 165 SER C C N N 166 SER O O N N 167 SER CB C N N 168 SER OG O N N 169 SER OXT O N N 170 SER H H N N 171 SER H2 H N N 172 SER HA H N N 173 SER HB2 H N N 174 SER HB3 H N N 175 SER HG H N N 176 SER HXT H N N 177 TRP N N N N 178 TRP CA C N S 179 TRP C C N N 180 TRP O O N N 181 TRP CB C N N 182 TRP CG C Y N 183 TRP CD1 C Y N 184 TRP CD2 C Y N 185 TRP NE1 N Y N 186 TRP CE2 C Y N 187 TRP CE3 C Y N 188 TRP CZ2 C Y N 189 TRP CZ3 C Y N 190 TRP CH2 C Y N 191 TRP OXT O N N 192 TRP H H N N 193 TRP H2 H N N 194 TRP HA H N N 195 TRP HB2 H N N 196 TRP HB3 H N N 197 TRP HD1 H N N 198 TRP HE1 H N N 199 TRP HE3 H N N 200 TRP HZ2 H N N 201 TRP HZ3 H N N 202 TRP HH2 H N N 203 TRP HXT H N N 204 VAL N N N N 205 VAL CA C N S 206 VAL C C N N 207 VAL O O N N 208 VAL CB C N N 209 VAL CG1 C N N 210 VAL CG2 C N N 211 VAL OXT O N N 212 VAL H H N N 213 VAL H2 H N N 214 VAL HA H N N 215 VAL HB H N N 216 VAL HG11 H N N 217 VAL HG12 H N N 218 VAL HG13 H N N 219 VAL HG21 H N N 220 VAL HG22 H N N 221 VAL HG23 H N N 222 VAL HXT H N N 223 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ACE C O doub N N 1 ACE C CH3 sing N N 2 ACE C H sing N N 3 ACE CH3 H1 sing N N 4 ACE CH3 H2 sing N N 5 ACE CH3 H3 sing N N 6 ALA N CA sing N N 7 ALA N H sing N N 8 ALA N H2 sing N N 9 ALA CA C sing N N 10 ALA CA CB sing N N 11 ALA CA HA sing N N 12 ALA C O doub N N 13 ALA C OXT sing N N 14 ALA CB HB1 sing N N 15 ALA CB HB2 sing N N 16 ALA CB HB3 sing N N 17 ALA OXT HXT sing N N 18 ARG N CA sing N N 19 ARG N H sing N N 20 ARG N H2 sing N N 21 ARG CA C sing N N 22 ARG CA CB sing N N 23 ARG CA HA sing N N 24 ARG C O doub N N 25 ARG C OXT sing N N 26 ARG CB CG sing N N 27 ARG CB HB2 sing N N 28 ARG CB HB3 sing N N 29 ARG CG CD sing N N 30 ARG CG HG2 sing N N 31 ARG CG HG3 sing N N 32 ARG CD NE sing N N 33 ARG CD HD2 sing N N 34 ARG CD HD3 sing N N 35 ARG NE CZ sing N N 36 ARG NE HE sing N N 37 ARG CZ NH1 sing N N 38 ARG CZ NH2 doub N N 39 ARG NH1 HH11 sing N N 40 ARG NH1 HH12 sing N N 41 ARG NH2 HH21 sing N N 42 ARG NH2 HH22 sing N N 43 ARG OXT HXT sing N N 44 ASP N CA sing N N 45 ASP N H sing N N 46 ASP N H2 sing N N 47 ASP CA C sing N N 48 ASP CA CB sing N N 49 ASP CA HA sing N N 50 ASP C O doub N N 51 ASP C OXT sing N N 52 ASP CB CG sing N N 53 ASP CB HB2 sing N N 54 ASP CB HB3 sing N N 55 ASP CG OD1 doub N N 56 ASP CG OD2 sing N N 57 ASP OD2 HD2 sing N N 58 ASP OXT HXT sing N N 59 GLY N CA sing N N 60 GLY N H sing N N 61 GLY N H2 sing N N 62 GLY CA C sing N N 63 GLY CA HA2 sing N N 64 GLY CA HA3 sing N N 65 GLY C O doub N N 66 GLY C OXT sing N N 67 GLY OXT HXT sing N N 68 HIS N CA sing N N 69 HIS N H sing N N 70 HIS N H2 sing N N 71 HIS CA C sing N N 72 HIS CA CB sing N N 73 HIS CA HA sing N N 74 HIS C O doub N N 75 HIS C OXT sing N N 76 HIS CB CG sing N N 77 HIS CB HB2 sing N N 78 HIS CB HB3 sing N N 79 HIS CG ND1 sing Y N 80 HIS CG CD2 doub Y N 81 HIS ND1 CE1 doub Y N 82 HIS ND1 HD1 sing N N 83 HIS CD2 NE2 sing Y N 84 HIS CD2 HD2 sing N N 85 HIS CE1 NE2 sing Y N 86 HIS CE1 HE1 sing N N 87 HIS NE2 HE2 sing N N 88 HIS OXT HXT sing N N 89 HOH O H1 sing N N 90 HOH O H2 sing N N 91 ILE N CA sing N N 92 ILE N H sing N N 93 ILE N H2 sing N N 94 ILE CA C sing N N 95 ILE CA CB sing N N 96 ILE CA HA sing N N 97 ILE C O doub N N 98 ILE C OXT sing N N 99 ILE CB CG1 sing N N 100 ILE CB CG2 sing N N 101 ILE CB HB sing N N 102 ILE CG1 CD1 sing N N 103 ILE CG1 HG12 sing N N 104 ILE CG1 HG13 sing N N 105 ILE CG2 HG21 sing N N 106 ILE CG2 HG22 sing N N 107 ILE CG2 HG23 sing N N 108 ILE CD1 HD11 sing N N 109 ILE CD1 HD12 sing N N 110 ILE CD1 HD13 sing N N 111 ILE OXT HXT sing N N 112 LEU N CA sing N N 113 LEU N H sing N N 114 LEU N H2 sing N N 115 LEU CA C sing N N 116 LEU CA CB sing N N 117 LEU CA HA sing N N 118 LEU C O doub N N 119 LEU C OXT sing N N 120 LEU CB CG sing N N 121 LEU CB HB2 sing N N 122 LEU CB HB3 sing N N 123 LEU CG CD1 sing N N 124 LEU CG CD2 sing N N 125 LEU CG HG sing N N 126 LEU CD1 HD11 sing N N 127 LEU CD1 HD12 sing N N 128 LEU CD1 HD13 sing N N 129 LEU CD2 HD21 sing N N 130 LEU CD2 HD22 sing N N 131 LEU CD2 HD23 sing N N 132 LEU OXT HXT sing N N 133 NH2 N HN1 sing N N 134 NH2 N HN2 sing N N 135 PRO N CA sing N N 136 PRO N CD sing N N 137 PRO N H sing N N 138 PRO CA C sing N N 139 PRO CA CB sing N N 140 PRO CA HA sing N N 141 PRO C O doub N N 142 PRO C OXT sing N N 143 PRO CB CG sing N N 144 PRO CB HB2 sing N N 145 PRO CB HB3 sing N N 146 PRO CG CD sing N N 147 PRO CG HG2 sing N N 148 PRO CG HG3 sing N N 149 PRO CD HD2 sing N N 150 PRO CD HD3 sing N N 151 PRO OXT HXT sing N N 152 SER N CA sing N N 153 SER N H sing N N 154 SER N H2 sing N N 155 SER CA C sing N N 156 SER CA CB sing N N 157 SER CA HA sing N N 158 SER C O doub N N 159 SER C OXT sing N N 160 SER CB OG sing N N 161 SER CB HB2 sing N N 162 SER CB HB3 sing N N 163 SER OG HG sing N N 164 SER OXT HXT sing N N 165 TRP N CA sing N N 166 TRP N H sing N N 167 TRP N H2 sing N N 168 TRP CA C sing N N 169 TRP CA CB sing N N 170 TRP CA HA sing N N 171 TRP C O doub N N 172 TRP C OXT sing N N 173 TRP CB CG sing N N 174 TRP CB HB2 sing N N 175 TRP CB HB3 sing N N 176 TRP CG CD1 doub Y N 177 TRP CG CD2 sing Y N 178 TRP CD1 NE1 sing Y N 179 TRP CD1 HD1 sing N N 180 TRP CD2 CE2 doub Y N 181 TRP CD2 CE3 sing Y N 182 TRP NE1 CE2 sing Y N 183 TRP NE1 HE1 sing N N 184 TRP CE2 CZ2 sing Y N 185 TRP CE3 CZ3 doub Y N 186 TRP CE3 HE3 sing N N 187 TRP CZ2 CH2 doub Y N 188 TRP CZ2 HZ2 sing N N 189 TRP CZ3 CH2 sing Y N 190 TRP CZ3 HZ3 sing N N 191 TRP CH2 HH2 sing N N 192 TRP OXT HXT sing N N 193 VAL N CA sing N N 194 VAL N H sing N N 195 VAL N H2 sing N N 196 VAL CA C sing N N 197 VAL CA CB sing N N 198 VAL CA HA sing N N 199 VAL C O doub N N 200 VAL C OXT sing N N 201 VAL CB CG1 sing N N 202 VAL CB CG2 sing N N 203 VAL CB HB sing N N 204 VAL CG1 HG11 sing N N 205 VAL CG1 HG12 sing N N 206 VAL CG1 HG13 sing N N 207 VAL CG2 HG21 sing N N 208 VAL CG2 HG22 sing N N 209 VAL CG2 HG23 sing N N 210 VAL OXT HXT sing N N 211 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number R01-GM056423 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 'CHLORIDE ION' CL 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4QKM _pdbx_initial_refinement_model.details ? # loop_ _pdbx_related_exp_data_set.ordinal _pdbx_related_exp_data_set.data_set_type _pdbx_related_exp_data_set.data_reference _pdbx_related_exp_data_set.metadata_reference _pdbx_related_exp_data_set.details 1 'diffraction image data' 10.11577/1605552 ? ? 2 'diffraction image data' 10.11577/1605650 ? ? #