HEADER HYDROLASE 02-MAY-16 5JOQ TITLE CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN FROM TITLE 2 LISTERIA MONOCYTOGENES EGD-E COMPND MOL_ID: 1; COMPND 2 MOLECULE: LMO2184 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES SEROVAR 1/2A (STRAIN SOURCE 3 ATCC BAA-679 / EGD-E); SOURCE 4 ORGANISM_TAXID: 169963; SOURCE 5 STRAIN: ATCC BAA-679 / EGD-E; SOURCE 6 GENE: LMO2184; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, NIAID, KEYWDS 2 NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, FERRICHROME KEYWDS 3 ABC TRANSPORTER SUBSTRATE-BINDING PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.S.BRUNZELLE,Z.WAWRZAK,M.KUDRITSKA,A.SAVCHENKO,W.F.ANDERSON,CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 27-SEP-23 5JOQ 1 REMARK REVDAT 2 24-JAN-18 5JOQ 1 JRNL REMARK REVDAT 1 27-JUL-16 5JOQ 0 JRNL AUTH J.S.BRUNZELLE,Z.WAWRZAK,M.KUDRITSKA,A.SAVCHENKO, JRNL AUTH 2 W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SUBSTRATE-BINDING JRNL TITL 2 PROTEIN FROM LISTERIA MONOCYTOGENES EGD-E JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2203) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1540 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4097 - 4.4227 0.98 2829 136 0.1496 0.1514 REMARK 3 2 4.4227 - 3.5117 1.00 2676 163 0.1215 0.1381 REMARK 3 3 3.5117 - 3.0681 1.00 2666 143 0.1538 0.1732 REMARK 3 4 3.0681 - 2.7878 1.00 2611 150 0.1646 0.1759 REMARK 3 5 2.7878 - 2.5880 1.00 2620 139 0.1654 0.2163 REMARK 3 6 2.5880 - 2.4355 1.00 2642 129 0.1628 0.1871 REMARK 3 7 2.4355 - 2.3135 1.00 2606 122 0.1536 0.2166 REMARK 3 8 2.3135 - 2.2129 1.00 2593 145 0.1462 0.1614 REMARK 3 9 2.2129 - 2.1277 1.00 2605 119 0.1554 0.2086 REMARK 3 10 2.1277 - 2.0543 1.00 2568 156 0.1665 0.1702 REMARK 3 11 2.0543 - 1.9900 1.00 2561 138 0.1776 0.2146 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2125 REMARK 3 ANGLE : 1.002 2881 REMARK 3 CHIRALITY : 0.073 331 REMARK 3 PLANARITY : 0.006 375 REMARK 3 DIHEDRAL : 11.833 1331 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9394 61.5549 -14.3773 REMARK 3 T TENSOR REMARK 3 T11: 0.2460 T22: 0.2448 REMARK 3 T33: 0.1443 T12: -0.0822 REMARK 3 T13: -0.0902 T23: 0.0488 REMARK 3 L TENSOR REMARK 3 L11: 2.2441 L22: 2.7472 REMARK 3 L33: 3.4297 L12: -0.4733 REMARK 3 L13: -1.4786 L23: 0.0543 REMARK 3 S TENSOR REMARK 3 S11: -0.1534 S12: 0.5945 S13: 0.1941 REMARK 3 S21: -0.5679 S22: -0.0438 S23: 0.2721 REMARK 3 S31: -0.3184 S32: 0.1957 S33: 0.0926 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.2514 68.3749 -14.6054 REMARK 3 T TENSOR REMARK 3 T11: 0.4262 T22: 0.3147 REMARK 3 T33: 0.2252 T12: -0.1576 REMARK 3 T13: -0.0682 T23: 0.0915 REMARK 3 L TENSOR REMARK 3 L11: 1.5438 L22: 1.1797 REMARK 3 L33: 2.9155 L12: 0.7582 REMARK 3 L13: 0.5960 L23: -0.0650 REMARK 3 S TENSOR REMARK 3 S11: -0.3566 S12: 0.3984 S13: 0.4503 REMARK 3 S21: -0.4862 S22: 0.2668 S23: -0.0286 REMARK 3 S31: -0.7858 S32: 0.3813 S33: 0.1322 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 93 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.9748 61.7187 -4.5435 REMARK 3 T TENSOR REMARK 3 T11: 0.1578 T22: 0.1608 REMARK 3 T33: 0.1659 T12: -0.0044 REMARK 3 T13: -0.0401 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.6717 L22: 2.2347 REMARK 3 L33: 1.6448 L12: 1.0587 REMARK 3 L13: 0.3598 L23: 0.8037 REMARK 3 S TENSOR REMARK 3 S11: -0.0780 S12: 0.0106 S13: 0.2213 REMARK 3 S21: -0.1645 S22: -0.0330 S23: 0.2836 REMARK 3 S31: -0.3020 S32: -0.1500 S33: 0.1502 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6998 41.9862 -8.0208 REMARK 3 T TENSOR REMARK 3 T11: 0.1243 T22: 0.1906 REMARK 3 T33: 0.1686 T12: -0.0393 REMARK 3 T13: 0.0068 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 7.5685 L22: 6.6796 REMARK 3 L33: 7.8648 L12: -5.5601 REMARK 3 L13: 7.1294 L23: -5.0528 REMARK 3 S TENSOR REMARK 3 S11: 0.2697 S12: 0.5479 S13: -0.3801 REMARK 3 S21: -0.3046 S22: -0.1257 S23: -0.0832 REMARK 3 S31: 0.4149 S32: 0.3684 S33: -0.1401 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 162 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8993 52.1365 12.5664 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.0819 REMARK 3 T33: 0.1337 T12: -0.0072 REMARK 3 T13: -0.0349 T23: 0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.6752 L22: 0.8106 REMARK 3 L33: 1.2967 L12: -0.1773 REMARK 3 L13: 0.2050 L23: -0.2171 REMARK 3 S TENSOR REMARK 3 S11: 0.0581 S12: -0.0651 S13: -0.0139 REMARK 3 S21: 0.0508 S22: -0.0042 S23: -0.1072 REMARK 3 S31: 0.0820 S32: 0.0081 S33: -0.0313 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 263 THROUGH 290 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5226 48.4549 -1.1345 REMARK 3 T TENSOR REMARK 3 T11: 0.0926 T22: 0.1698 REMARK 3 T33: 0.1367 T12: -0.0268 REMARK 3 T13: 0.0083 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 3.0773 L22: 3.6154 REMARK 3 L33: 6.0544 L12: 0.5555 REMARK 3 L13: 1.3047 L23: -0.5615 REMARK 3 S TENSOR REMARK 3 S11: -0.0725 S12: 0.3182 S13: -0.0453 REMARK 3 S21: -0.2288 S22: -0.0434 S23: -0.5465 REMARK 3 S31: 0.2449 S32: 0.3449 S33: 0.0721 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JOQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220968. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : DIAMOND 111 REMARK 200 OPTICS : BERYLLIUM LENS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30557 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 33.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.00 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.80 REMARK 200 R MERGE FOR SHELL (I) : 0.66200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2Q8Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M NH4 CITRATE PH 7, 0.1M BIS-TRIS REMARK 280 PROPANE PH 7, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.00000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.00000 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.00000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 53.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 53.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34750 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 59.19000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 102.52009 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -59.19000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 102.52009 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 474 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 674 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 737 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 LYS A 3 REMARK 465 MET A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 ILE A 7 REMARK 465 SER A 8 REMARK 465 LEU A 9 REMARK 465 VAL A 10 REMARK 465 LEU A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 PHE A 14 REMARK 465 LEU A 15 REMARK 465 VAL A 16 REMARK 465 GLY A 17 REMARK 465 CYS A 18 REMARK 465 GLY A 19 REMARK 465 LYS A 20 REMARK 465 GLU A 21 REMARK 465 GLU A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 GLN A 25 REMARK 465 LYS A 26 REMARK 465 PRO A 27 REMARK 465 GLU A 28 REMARK 465 GLN A 29 REMARK 465 LYS A 30 REMARK 465 THR A 31 REMARK 465 ASP A 32 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 265 O HOH A 401 1.79 REMARK 500 O HOH A 528 O HOH A 646 2.10 REMARK 500 NH2 ARG A 259 OH TYR A 261 2.14 REMARK 500 OD1 ASN A 132 O HOH A 403 2.15 REMARK 500 ND2 ASN A 132 O HOH A 404 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 687 O HOH A 687 11555 1.83 REMARK 500 O HOH A 613 O HOH A 613 9555 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 178 56.47 -142.44 REMARK 500 ASN A 220 67.95 61.01 REMARK 500 ARG A 259 50.73 -116.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 743 DISTANCE = 6.54 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP02797 RELATED DB: TARGETTRACK DBREF 5JOQ A 1 290 UNP Q7AP55 Q7AP55_LISMO 1 290 SEQRES 1 A 290 MET ARG LYS MET ALA VAL ILE SER LEU VAL LEU LEU LEU SEQRES 2 A 290 PHE LEU VAL GLY CYS GLY LYS GLU GLU ALA ALA GLN LYS SEQRES 3 A 290 PRO GLU GLN LYS THR ASP LYS GLU PRO LYS ILE VAL ALA SEQRES 4 A 290 THR THR VAL ALA ILE THR GLU ILE MET ASP LYS LEU ASP SEQRES 5 A 290 LEU PRO LEU VAL GLY ILE PRO SER SER SER LYS LYS LEU SEQRES 6 A 290 PRO LYS ARG TYR ALA ASP VAL LYS GLU THR GLY SER PRO SEQRES 7 A 290 MET GLY PRO ASP LEU GLU ILE ILE ARG MET LEU LYS PRO SEQRES 8 A 290 ASP MET VAL LEU SER THR LYS THR LEU GLU ALA ASP LEU SEQRES 9 A 290 LYS SER GLY PHE GLU GLY ALA ASP LEU GLU ALA ASP PHE SEQRES 10 A 290 LEU ASP PHE THR SER ILE ALA SER MET GLN THR GLU ILE SEQRES 11 A 290 LYS ASN LEU GLY ALA LYS PHE ASP ARG ILE GLU GLU ALA SEQRES 12 A 290 THR LYS LEU ASN LYS ASP LEU THR SER ASP ILE ASP GLN SEQRES 13 A 290 VAL LYS SER ASN VAL ALA LYS LYS LYS LYS PRO THR VAL SEQRES 14 A 290 LEU ILE LEU MET GLY VAL PRO GLY SER TYR LEU VAL VAL SEQRES 15 A 290 THR GLU HIS ALA TYR ILE GLY ASP LEU VAL LYS LEU ALA SEQRES 16 A 290 GLY GLY GLU ASN VAL ILE LYS ASP GLN LYS VAL GLU TYR SEQRES 17 A 290 LEU ALA SER ASN THR GLU TYR LEU GLN SER ALA ASN PRO SEQRES 18 A 290 ASP ILE ILE LEU ARG ALA ALA HIS GLY MET PRO ALA GLU SEQRES 19 A 290 VAL VAL LYS MET PHE ASP GLU GLU PHE LYS THR ASN ASP SEQRES 20 A 290 ILE TRP LYS HIS PHE ASP ALA VAL LYS ASN ASN ARG VAL SEQRES 21 A 290 TYR ASP LEU ASP GLU ASN LEU PHE GLY MET THR ALA SER SEQRES 22 A 290 LEU ASN ALA PRO GLU ALA LEU LYS GLU MET GLU LYS MET SEQRES 23 A 290 LEU TYR ASP ASN HET CIT A 301 18 HET CL A 302 1 HETNAM CIT CITRIC ACID HETNAM CL CHLORIDE ION FORMUL 2 CIT C6 H8 O7 FORMUL 3 CL CL 1- FORMUL 4 HOH *343(H2 O) HELIX 1 AA1 THR A 41 LEU A 51 1 11 HELIX 2 AA2 PRO A 66 ALA A 70 5 5 HELIX 3 AA3 ASP A 82 LEU A 89 1 8 HELIX 4 AA4 LEU A 100 ALA A 111 1 12 HELIX 5 AA5 SER A 122 PHE A 137 1 16 HELIX 6 AA6 ARG A 139 ALA A 162 1 24 HELIX 7 AA7 ALA A 186 ALA A 195 1 10 HELIX 8 AA8 ASN A 212 ASN A 220 1 9 HELIX 9 AA9 PRO A 232 ASN A 246 1 15 HELIX 10 AB1 ASN A 246 HIS A 251 1 6 HELIX 11 AB2 PHE A 252 ASN A 257 1 6 HELIX 12 AB3 ASN A 275 ASP A 289 1 15 SHEET 1 AA1 3 ILE A 37 ALA A 39 0 SHEET 2 AA1 3 MET A 93 THR A 97 1 O LEU A 95 N VAL A 38 SHEET 3 AA1 3 ALA A 115 LEU A 118 1 O LEU A 118 N SER A 96 SHEET 1 AA2 2 GLY A 57 ILE A 58 0 SHEET 2 AA2 2 LYS A 73 GLU A 74 1 O LYS A 73 N ILE A 58 SHEET 1 AA3 2 GLY A 76 SER A 77 0 SHEET 2 AA3 2 GLY A 80 PRO A 81 -1 O GLY A 80 N SER A 77 SHEET 1 AA4 4 GLU A 198 ASN A 199 0 SHEET 2 AA4 4 THR A 168 MET A 173 1 N VAL A 169 O GLU A 198 SHEET 3 AA4 4 LEU A 180 VAL A 182 -1 O LEU A 180 N MET A 173 SHEET 4 AA4 4 TYR A 208 ALA A 210 -1 O LEU A 209 N VAL A 181 SHEET 1 AA5 4 GLU A 198 ASN A 199 0 SHEET 2 AA5 4 THR A 168 MET A 173 1 N VAL A 169 O GLU A 198 SHEET 3 AA5 4 ILE A 223 ALA A 227 1 O LEU A 225 N LEU A 172 SHEET 4 AA5 4 VAL A 260 ASP A 262 1 O TYR A 261 N ILE A 224 SITE 1 AC1 6 LYS A 165 PRO A 167 ASP A 222 ARG A 259 SITE 2 AC1 6 HOH A 407 HOH A 416 SITE 1 AC2 4 THR A 97 LYS A 98 THR A 99 PHE A 120 CRYST1 118.380 118.380 106.000 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008447 0.004877 0.000000 0.00000 SCALE2 0.000000 0.009754 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009434 0.00000