HEADER LYASE 03-MAY-16 5JOT OBSLTE 13-DEC-17 5JOT 6BQE TITLE LOW-RESOLUTION STRUCTURE OF CYCLOHEXADIENYL DEHYDRATASE FROM TITLE 2 PSEUDOMONAS AERUGINOSA IN SPACE GROUP P4322. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLOHEXADIENYL DEHYDRATASE; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: UNP RESIDUES 26-268; COMPND 5 EC: 4.2.1.51,4.2.1.91; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA (STRAIN ATCC 15692 / SOURCE 3 PAO1 / 1C / PRS 101 / LMG 12228); SOURCE 4 ORGANISM_TAXID: 208964; SOURCE 5 STRAIN: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228; SOURCE 6 GENE: PHEC, PA3475; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PDOTS7 KEYWDS LYASE, PHENYLALANINE BIOSYNTHESIS, CYCLOHEXADIENYL DEHYDRATASE, KEYWDS 2 PERIPLASMIC BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.E.CLIFTON,P.D.CARR,C.J.JACKSON REVDAT 2 13-DEC-17 5JOT 1 OBSLTE REVDAT 1 03-MAY-17 5JOT 0 JRNL AUTH B.E.CLIFTON,J.A.KACZMARSKI,P.D.CARR,C.J.JACKSON JRNL TITL TO BE PUBLISHED. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 15344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.245 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 832 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.11 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.19 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1114 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 50 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5677 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.570 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.480 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 27.668 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.871 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.800 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5824 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5433 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7916 ; 1.397 ; 1.953 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12434 ; 1.033 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 717 ; 6.795 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 286 ;36.129 ;23.741 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 934 ;15.738 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;21.808 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 864 ; 0.067 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6681 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1385 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2880 ; 1.993 ; 3.297 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2878 ; 1.993 ; 3.297 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3591 ; 3.317 ; 4.944 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3592 ; 3.317 ; 4.944 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2944 ; 2.245 ; 3.494 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2945 ; 2.244 ; 3.494 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4326 ; 3.697 ; 5.167 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6812 ; 5.731 ;26.579 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6813 ; 5.731 ;26.582 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 3 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 13 252 B 13 252 14638 0.07 0.05 REMARK 3 2 A 13 252 C 13 252 14611 0.08 0.05 REMARK 3 3 B 13 252 C 13 252 14968 0.05 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000219142. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JANUARY 10, 2014 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16221 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.110 REMARK 200 RESOLUTION RANGE LOW (A) : 47.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.30 REMARK 200 R MERGE (I) : 0.64500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 1.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: 5HPQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 UL PROTEIN (10 MG/ML IN 20 MM TRIS REMARK 280 PH 8.0, 0.1 M NACL, 0.5 MM DTT, 10% GLYCEROL) + 2 UL PRECIPITANT REMARK 280 (0.2 M AMMONIUM ACETATE, 18% (W/V) PEG 3350, 0.1 M TRIS PH 8.0), REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.43250 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 140.14875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.71625 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 93.43250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 46.71625 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 140.14875 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 GLY A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 ILE A 11 REMARK 465 GLN A 12 REMARK 465 GLY A 253 REMARK 465 LYS A 254 REMARK 465 LEU A 255 REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 GLY B 3 REMARK 465 SER B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 HIS B 9 REMARK 465 HIS B 10 REMARK 465 ILE B 11 REMARK 465 GLN B 12 REMARK 465 GLY B 253 REMARK 465 LYS B 254 REMARK 465 LEU B 255 REMARK 465 MET C 1 REMARK 465 ARG C 2 REMARK 465 GLY C 3 REMARK 465 SER C 4 REMARK 465 HIS C 5 REMARK 465 HIS C 6 REMARK 465 HIS C 7 REMARK 465 HIS C 8 REMARK 465 HIS C 9 REMARK 465 HIS C 10 REMARK 465 ILE C 11 REMARK 465 GLN C 12 REMARK 465 GLY C 253 REMARK 465 LYS C 254 REMARK 465 LEU C 255 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 ARG A 18 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 LYS A 153 CG CD CE NZ REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 ARG A 156 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 13 CG CD OE1 OE2 REMARK 470 ARG B 18 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 21 CG CD OE1 OE2 REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 ARG B 76 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 82 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 ARG B 156 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 190 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 237 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 13 CG CD OE1 OE2 REMARK 470 ARG C 18 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 41 CG CD OE1 OE2 REMARK 470 GLU C 42 CG CD OE1 OE2 REMARK 470 ARG C 76 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 153 CG CD CE NZ REMARK 470 ARG C 190 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 202 CG CD OE1 NE2 REMARK 470 ARG C 247 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 196 CA - CB - SG ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 37 110.63 -166.53 REMARK 500 SER A 88 38.85 -168.79 REMARK 500 ASP A 109 -155.52 -171.11 REMARK 500 HIS A 199 67.36 28.15 REMARK 500 ALA A 251 -101.47 -122.77 REMARK 500 SER B 37 110.39 -165.24 REMARK 500 SER B 88 37.83 -171.40 REMARK 500 ASP B 109 -154.45 -171.67 REMARK 500 HIS B 199 65.58 30.10 REMARK 500 ALA B 251 -102.45 -124.53 REMARK 500 SER C 37 111.47 -166.94 REMARK 500 SER C 88 38.30 -169.23 REMARK 500 ASP C 109 -155.75 -168.89 REMARK 500 HIS C 199 65.97 29.22 REMARK 500 ALA C 251 -103.46 -124.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 13 SER A 14 141.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT C 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KBR RELATED DB: PDB REMARK 900 3KBR CONTAINS THE SAME PROTEIN COMPLEXED WITH HEPES. REMARK 900 RELATED ID: 5HPQ RELATED DB: PDB REMARK 900 5HPQ CONTAINS THE SAME PROTEIN CRYSTALLISED IN A DIFFERENT SPACE REMARK 900 GROUP (H3). DBREF 5JOT A 12 254 UNP Q01269 PHEC_PSEAE 26 268 DBREF 5JOT B 12 254 UNP Q01269 PHEC_PSEAE 26 268 DBREF 5JOT C 12 254 UNP Q01269 PHEC_PSEAE 26 268 SEQADV 5JOT MET A 1 UNP Q01269 INITIATING METHIONINE SEQADV 5JOT ARG A 2 UNP Q01269 EXPRESSION TAG SEQADV 5JOT GLY A 3 UNP Q01269 EXPRESSION TAG SEQADV 5JOT SER A 4 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS A 5 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS A 6 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS A 7 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS A 8 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS A 9 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS A 10 UNP Q01269 EXPRESSION TAG SEQADV 5JOT ILE A 11 UNP Q01269 EXPRESSION TAG SEQADV 5JOT LEU A 255 UNP Q01269 EXPRESSION TAG SEQADV 5JOT MET B 1 UNP Q01269 INITIATING METHIONINE SEQADV 5JOT ARG B 2 UNP Q01269 EXPRESSION TAG SEQADV 5JOT GLY B 3 UNP Q01269 EXPRESSION TAG SEQADV 5JOT SER B 4 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS B 5 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS B 6 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS B 7 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS B 8 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS B 9 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS B 10 UNP Q01269 EXPRESSION TAG SEQADV 5JOT ILE B 11 UNP Q01269 EXPRESSION TAG SEQADV 5JOT LEU B 255 UNP Q01269 EXPRESSION TAG SEQADV 5JOT MET C 1 UNP Q01269 INITIATING METHIONINE SEQADV 5JOT ARG C 2 UNP Q01269 EXPRESSION TAG SEQADV 5JOT GLY C 3 UNP Q01269 EXPRESSION TAG SEQADV 5JOT SER C 4 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS C 5 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS C 6 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS C 7 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS C 8 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS C 9 UNP Q01269 EXPRESSION TAG SEQADV 5JOT HIS C 10 UNP Q01269 EXPRESSION TAG SEQADV 5JOT ILE C 11 UNP Q01269 EXPRESSION TAG SEQADV 5JOT LEU C 255 UNP Q01269 EXPRESSION TAG SEQRES 1 A 255 MET ARG GLY SER HIS HIS HIS HIS HIS HIS ILE GLN GLU SEQRES 2 A 255 SER ARG LEU ASP ARG ILE LEU GLU SER GLY VAL LEU ARG SEQRES 3 A 255 VAL ALA THR THR GLY ASP TYR LYS PRO PHE SER TYR ARG SEQRES 4 A 255 THR GLU GLU GLY GLY TYR ALA GLY PHE ASP VAL ASP MET SEQRES 5 A 255 ALA GLN ARG LEU ALA GLU SER LEU GLY ALA LYS LEU VAL SEQRES 6 A 255 VAL VAL PRO THR SER TRP PRO ASN LEU MET ARG ASP PHE SEQRES 7 A 255 ALA ASP ASP ARG PHE ASP ILE ALA MET SER GLY ILE SER SEQRES 8 A 255 ILE ASN LEU GLU ARG GLN ARG GLN ALA TYR PHE SER ILE SEQRES 9 A 255 PRO TYR LEU ARG ASP GLY LYS THR PRO ILE THR LEU CYS SEQRES 10 A 255 SER GLU GLU ALA ARG PHE GLN THR LEU GLU GLN ILE ASP SEQRES 11 A 255 GLN PRO GLY VAL THR ALA ILE VAL ASN PRO GLY GLY THR SEQRES 12 A 255 ASN GLU LYS PHE ALA ARG ALA ASN LEU LYS LYS ALA ARG SEQRES 13 A 255 ILE LEU VAL HIS PRO ASP ASN VAL THR ILE PHE GLN GLN SEQRES 14 A 255 ILE VAL ASP GLY LYS ALA ASP LEU MET MET THR ASP ALA SEQRES 15 A 255 ILE GLU ALA ARG LEU GLN SER ARG LEU HIS PRO GLU LEU SEQRES 16 A 255 CYS ALA VAL HIS PRO GLN GLN PRO PHE ASP PHE ALA GLU SEQRES 17 A 255 LYS ALA TYR LEU LEU PRO ARG ASP GLU ALA PHE LYS ARG SEQRES 18 A 255 TYR VAL ASP GLN TRP LEU HIS ILE ALA GLU GLN SER GLY SEQRES 19 A 255 LEU LEU ARG GLN ARG MET GLU HIS TRP LEU GLU TYR ARG SEQRES 20 A 255 TRP PRO THR ALA HIS GLY LYS LEU SEQRES 1 B 255 MET ARG GLY SER HIS HIS HIS HIS HIS HIS ILE GLN GLU SEQRES 2 B 255 SER ARG LEU ASP ARG ILE LEU GLU SER GLY VAL LEU ARG SEQRES 3 B 255 VAL ALA THR THR GLY ASP TYR LYS PRO PHE SER TYR ARG SEQRES 4 B 255 THR GLU GLU GLY GLY TYR ALA GLY PHE ASP VAL ASP MET SEQRES 5 B 255 ALA GLN ARG LEU ALA GLU SER LEU GLY ALA LYS LEU VAL SEQRES 6 B 255 VAL VAL PRO THR SER TRP PRO ASN LEU MET ARG ASP PHE SEQRES 7 B 255 ALA ASP ASP ARG PHE ASP ILE ALA MET SER GLY ILE SER SEQRES 8 B 255 ILE ASN LEU GLU ARG GLN ARG GLN ALA TYR PHE SER ILE SEQRES 9 B 255 PRO TYR LEU ARG ASP GLY LYS THR PRO ILE THR LEU CYS SEQRES 10 B 255 SER GLU GLU ALA ARG PHE GLN THR LEU GLU GLN ILE ASP SEQRES 11 B 255 GLN PRO GLY VAL THR ALA ILE VAL ASN PRO GLY GLY THR SEQRES 12 B 255 ASN GLU LYS PHE ALA ARG ALA ASN LEU LYS LYS ALA ARG SEQRES 13 B 255 ILE LEU VAL HIS PRO ASP ASN VAL THR ILE PHE GLN GLN SEQRES 14 B 255 ILE VAL ASP GLY LYS ALA ASP LEU MET MET THR ASP ALA SEQRES 15 B 255 ILE GLU ALA ARG LEU GLN SER ARG LEU HIS PRO GLU LEU SEQRES 16 B 255 CYS ALA VAL HIS PRO GLN GLN PRO PHE ASP PHE ALA GLU SEQRES 17 B 255 LYS ALA TYR LEU LEU PRO ARG ASP GLU ALA PHE LYS ARG SEQRES 18 B 255 TYR VAL ASP GLN TRP LEU HIS ILE ALA GLU GLN SER GLY SEQRES 19 B 255 LEU LEU ARG GLN ARG MET GLU HIS TRP LEU GLU TYR ARG SEQRES 20 B 255 TRP PRO THR ALA HIS GLY LYS LEU SEQRES 1 C 255 MET ARG GLY SER HIS HIS HIS HIS HIS HIS ILE GLN GLU SEQRES 2 C 255 SER ARG LEU ASP ARG ILE LEU GLU SER GLY VAL LEU ARG SEQRES 3 C 255 VAL ALA THR THR GLY ASP TYR LYS PRO PHE SER TYR ARG SEQRES 4 C 255 THR GLU GLU GLY GLY TYR ALA GLY PHE ASP VAL ASP MET SEQRES 5 C 255 ALA GLN ARG LEU ALA GLU SER LEU GLY ALA LYS LEU VAL SEQRES 6 C 255 VAL VAL PRO THR SER TRP PRO ASN LEU MET ARG ASP PHE SEQRES 7 C 255 ALA ASP ASP ARG PHE ASP ILE ALA MET SER GLY ILE SER SEQRES 8 C 255 ILE ASN LEU GLU ARG GLN ARG GLN ALA TYR PHE SER ILE SEQRES 9 C 255 PRO TYR LEU ARG ASP GLY LYS THR PRO ILE THR LEU CYS SEQRES 10 C 255 SER GLU GLU ALA ARG PHE GLN THR LEU GLU GLN ILE ASP SEQRES 11 C 255 GLN PRO GLY VAL THR ALA ILE VAL ASN PRO GLY GLY THR SEQRES 12 C 255 ASN GLU LYS PHE ALA ARG ALA ASN LEU LYS LYS ALA ARG SEQRES 13 C 255 ILE LEU VAL HIS PRO ASP ASN VAL THR ILE PHE GLN GLN SEQRES 14 C 255 ILE VAL ASP GLY LYS ALA ASP LEU MET MET THR ASP ALA SEQRES 15 C 255 ILE GLU ALA ARG LEU GLN SER ARG LEU HIS PRO GLU LEU SEQRES 16 C 255 CYS ALA VAL HIS PRO GLN GLN PRO PHE ASP PHE ALA GLU SEQRES 17 C 255 LYS ALA TYR LEU LEU PRO ARG ASP GLU ALA PHE LYS ARG SEQRES 18 C 255 TYR VAL ASP GLN TRP LEU HIS ILE ALA GLU GLN SER GLY SEQRES 19 C 255 LEU LEU ARG GLN ARG MET GLU HIS TRP LEU GLU TYR ARG SEQRES 20 C 255 TRP PRO THR ALA HIS GLY LYS LEU HET ACT A 301 4 HET ACT B 301 4 HET ACT C 301 4 HETNAM ACT ACETATE ION FORMUL 4 ACT 3(C2 H3 O2 1-) FORMUL 7 HOH *12(H2 O) HELIX 1 AA1 SER A 14 GLY A 23 1 10 HELIX 2 AA2 GLY A 47 LEU A 60 1 14 HELIX 3 AA3 SER A 70 ASP A 80 1 11 HELIX 4 AA4 ASN A 93 ARG A 98 1 6 HELIX 5 AA5 SER A 118 GLN A 124 5 7 HELIX 6 AA6 THR A 125 ASP A 130 1 6 HELIX 7 AA7 GLY A 142 LEU A 152 1 11 HELIX 8 AA8 VAL A 164 ILE A 166 5 3 HELIX 9 AA9 PHE A 167 ASP A 172 1 6 HELIX 10 AB1 ALA A 182 HIS A 192 1 11 HELIX 11 AB2 ASP A 216 SER A 233 1 18 HELIX 12 AB3 GLY A 234 TYR A 246 1 13 HELIX 13 AB4 SER B 14 GLY B 23 1 10 HELIX 14 AB5 GLY B 47 LEU B 60 1 14 HELIX 15 AB6 SER B 70 ASP B 80 1 11 HELIX 16 AB7 ASN B 93 ARG B 98 1 6 HELIX 17 AB8 SER B 118 GLN B 124 5 7 HELIX 18 AB9 THR B 125 ASP B 130 1 6 HELIX 19 AC1 GLY B 142 LEU B 152 1 11 HELIX 20 AC2 VAL B 164 ILE B 166 5 3 HELIX 21 AC3 PHE B 167 ASP B 172 1 6 HELIX 22 AC4 ALA B 182 HIS B 192 1 11 HELIX 23 AC5 ASP B 216 SER B 233 1 18 HELIX 24 AC6 GLY B 234 TYR B 246 1 13 HELIX 25 AC7 SER C 14 GLY C 23 1 10 HELIX 26 AC8 GLY C 47 LEU C 60 1 14 HELIX 27 AC9 ASN C 73 ASP C 80 1 8 HELIX 28 AD1 ASN C 93 ARG C 98 1 6 HELIX 29 AD2 SER C 118 GLN C 124 5 7 HELIX 30 AD3 THR C 125 ASP C 130 1 6 HELIX 31 AD4 GLY C 142 LEU C 152 1 11 HELIX 32 AD5 VAL C 164 ILE C 166 5 3 HELIX 33 AD6 PHE C 167 ASP C 172 1 6 HELIX 34 AD7 ALA C 182 HIS C 192 1 11 HELIX 35 AD8 ASP C 216 SER C 233 1 18 HELIX 36 AD9 GLY C 234 TYR C 246 1 13 SHEET 1 AA1 3 LYS A 63 PRO A 68 0 SHEET 2 AA1 3 VAL A 24 THR A 29 1 N VAL A 27 O VAL A 65 SHEET 3 AA1 3 ILE A 85 ALA A 86 1 O ILE A 85 N ALA A 28 SHEET 1 AA2 3 ASP A 32 TYR A 33 0 SHEET 2 AA2 3 SER A 37 ARG A 39 -1 O SER A 37 N TYR A 33 SHEET 3 AA2 3 TYR A 45 ALA A 46 -1 O ALA A 46 N TYR A 38 SHEET 1 AA3 2 TYR A 101 PHE A 102 0 SHEET 2 AA3 2 LEU A 212 LEU A 213 -1 O LEU A 213 N TYR A 101 SHEET 1 AA4 2 LEU A 107 ASP A 109 0 SHEET 2 AA4 2 ALA A 207 LYS A 209 -1 O LYS A 209 N LEU A 107 SHEET 1 AA5 3 LEU A 177 ASP A 181 0 SHEET 2 AA5 3 LYS A 111 LEU A 116 -1 N THR A 112 O THR A 180 SHEET 3 AA5 3 LEU A 195 ALA A 197 -1 O CYS A 196 N THR A 115 SHEET 1 AA6 2 THR A 135 VAL A 138 0 SHEET 2 AA6 2 ARG A 156 VAL A 159 1 O LEU A 158 N ALA A 136 SHEET 1 AA7 3 LYS B 63 PRO B 68 0 SHEET 2 AA7 3 VAL B 24 THR B 29 1 N VAL B 27 O VAL B 65 SHEET 3 AA7 3 ILE B 85 ALA B 86 1 O ILE B 85 N ALA B 28 SHEET 1 AA8 3 ASP B 32 TYR B 33 0 SHEET 2 AA8 3 SER B 37 ARG B 39 -1 O SER B 37 N TYR B 33 SHEET 3 AA8 3 TYR B 45 ALA B 46 -1 O ALA B 46 N TYR B 38 SHEET 1 AA9 2 TYR B 101 PHE B 102 0 SHEET 2 AA9 2 LEU B 212 LEU B 213 -1 O LEU B 213 N TYR B 101 SHEET 1 AB1 2 LEU B 107 ASP B 109 0 SHEET 2 AB1 2 ALA B 207 LYS B 209 -1 O LYS B 209 N LEU B 107 SHEET 1 AB2 3 LEU B 177 ASP B 181 0 SHEET 2 AB2 3 LYS B 111 LEU B 116 -1 N THR B 112 O THR B 180 SHEET 3 AB2 3 LEU B 195 ALA B 197 -1 O CYS B 196 N THR B 115 SHEET 1 AB3 2 THR B 135 VAL B 138 0 SHEET 2 AB3 2 ARG B 156 VAL B 159 1 O LEU B 158 N ALA B 136 SHEET 1 AB4 3 LYS C 63 PRO C 68 0 SHEET 2 AB4 3 VAL C 24 THR C 29 1 N VAL C 27 O VAL C 65 SHEET 3 AB4 3 ILE C 85 ALA C 86 1 O ILE C 85 N ALA C 28 SHEET 1 AB5 3 ASP C 32 TYR C 33 0 SHEET 2 AB5 3 SER C 37 ARG C 39 -1 O SER C 37 N TYR C 33 SHEET 3 AB5 3 TYR C 45 ALA C 46 -1 O ALA C 46 N TYR C 38 SHEET 1 AB6 2 TYR C 101 PHE C 102 0 SHEET 2 AB6 2 LEU C 212 LEU C 213 -1 O LEU C 213 N TYR C 101 SHEET 1 AB7 2 LEU C 107 ASP C 109 0 SHEET 2 AB7 2 ALA C 207 LYS C 209 -1 O LYS C 209 N LEU C 107 SHEET 1 AB8 3 LEU C 177 ASP C 181 0 SHEET 2 AB8 3 LYS C 111 LEU C 116 -1 N THR C 112 O THR C 180 SHEET 3 AB8 3 LEU C 195 ALA C 197 -1 O CYS C 196 N THR C 115 SHEET 1 AB9 2 THR C 135 VAL C 138 0 SHEET 2 AB9 2 ARG C 156 VAL C 159 1 O LEU C 158 N ALA C 136 SSBOND 1 CYS A 117 CYS A 196 1555 1555 2.00 SSBOND 2 CYS B 117 CYS B 196 1555 1555 2.07 SSBOND 3 CYS C 117 CYS C 196 1555 1555 2.05 CISPEP 1 LYS A 34 PRO A 35 0 9.91 CISPEP 2 LYS B 34 PRO B 35 0 11.69 CISPEP 3 LYS C 34 PRO C 35 0 10.50 SITE 1 AC1 5 GLY A 89 SER A 91 ARG A 96 GLY A 142 SITE 2 AC1 5 THR A 143 SITE 1 AC2 7 TRP B 71 GLY B 89 SER B 91 ARG B 96 SITE 2 AC2 7 GLY B 142 THR B 143 LYS B 209 SITE 1 AC3 7 TRP C 71 GLY C 89 ILE C 90 SER C 91 SITE 2 AC3 7 ARG C 96 GLY C 142 THR C 143 CRYST1 95.362 95.362 186.865 90.00 90.00 90.00 P 43 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010486 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005351 0.00000