HEADER TRANSFERASE/TRANSFERASE INHIBITOR 04-MAY-16 5JQ9 TITLE YERSINIA PESTIS DHPS WITH PTERINE-SULFA CONJUGATE COMPOUND 16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROPTEROATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHPS,DIHYDROPTEROATE PYROPHOSPHORYLASE; COMPND 5 EC: 2.5.1.15; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS KIM D27; SOURCE 3 ORGANISM_TAXID: 687916; SOURCE 4 STRAIN: KIM D27; SOURCE 5 GENE: FOLP, YPD27_2690; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DIHYDROPTEROATE SYNTHESIS, ANTIBIOTIC, PTERINE-SULFA CONJUGATES, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.WU,S.W.WHITE REVDAT 3 27-SEP-23 5JQ9 1 REMARK REVDAT 2 27-SEP-17 5JQ9 1 JRNL REMARK REVDAT 1 10-AUG-16 5JQ9 0 JRNL AUTH Y.ZHAO,W.R.SHADRICK,M.J.WALLACE,Y.WU,E.C.GRIFFITH,J.QI, JRNL AUTH 2 M.K.YUN,S.W.WHITE,R.E.LEE JRNL TITL PTERIN-SULFA CONJUGATES AS DIHYDROPTEROATE SYNTHASE JRNL TITL 2 INHIBITORS AND ANTIBACTERIAL AGENTS. JRNL REF BIOORG.MED.CHEM.LETT. V. 26 3950 2016 JRNL REFN ESSN 1464-3405 JRNL PMID 27423480 JRNL DOI 10.1016/J.BMCL.2016.07.006 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.14 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 30455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1530 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1450 - 4.6688 1.00 2759 117 0.1921 0.2277 REMARK 3 2 4.6688 - 3.7068 1.00 2644 151 0.1779 0.1812 REMARK 3 3 3.7068 - 3.2386 1.00 2651 146 0.2017 0.2361 REMARK 3 4 3.2386 - 2.9426 1.00 2627 129 0.2212 0.2665 REMARK 3 5 2.9426 - 2.7318 1.00 2649 130 0.2382 0.2746 REMARK 3 6 2.7318 - 2.5707 1.00 2626 131 0.2576 0.2823 REMARK 3 7 2.5707 - 2.4420 1.00 2642 125 0.2743 0.3183 REMARK 3 8 2.4420 - 2.3357 1.00 2605 149 0.2847 0.3010 REMARK 3 9 2.3357 - 2.2458 1.00 2582 160 0.3172 0.3670 REMARK 3 10 2.2458 - 2.1683 1.00 2592 139 0.3658 0.3769 REMARK 3 11 2.1683 - 2.1005 0.97 2548 153 0.3976 0.4271 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.82 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3837 REMARK 3 ANGLE : 0.739 5218 REMARK 3 CHIRALITY : 0.026 614 REMARK 3 PLANARITY : 0.003 674 REMARK 3 DIHEDRAL : 12.284 1334 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.1458 24.6199 106.9071 REMARK 3 T TENSOR REMARK 3 T11: 0.5289 T22: 0.4794 REMARK 3 T33: 0.9839 T12: -0.1203 REMARK 3 T13: -0.1264 T23: 0.1416 REMARK 3 L TENSOR REMARK 3 L11: 0.5349 L22: 0.2068 REMARK 3 L33: 1.0636 L12: -0.3114 REMARK 3 L13: 0.2203 L23: -0.1845 REMARK 3 S TENSOR REMARK 3 S11: -0.8008 S12: 0.2719 S13: 0.5484 REMARK 3 S21: 0.3957 S22: 0.0510 S23: -0.7842 REMARK 3 S31: -0.5360 S32: 0.4212 S33: -0.0039 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 16 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5850 14.4053 122.8117 REMARK 3 T TENSOR REMARK 3 T11: 0.6039 T22: 0.5905 REMARK 3 T33: 0.5590 T12: 0.0781 REMARK 3 T13: -0.1697 T23: -0.0692 REMARK 3 L TENSOR REMARK 3 L11: 1.0858 L22: 1.7440 REMARK 3 L33: 0.8355 L12: -0.1514 REMARK 3 L13: 0.4744 L23: 0.7849 REMARK 3 S TENSOR REMARK 3 S11: -0.0026 S12: -0.7859 S13: 0.0261 REMARK 3 S21: 1.0237 S22: 0.2281 S23: -0.5424 REMARK 3 S31: 0.1908 S32: 0.0558 S33: 0.0031 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 110 THROUGH 275 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9795 20.1683 109.4095 REMARK 3 T TENSOR REMARK 3 T11: 0.2504 T22: 0.1878 REMARK 3 T33: 0.3476 T12: 0.0026 REMARK 3 T13: 0.0180 T23: 0.0176 REMARK 3 L TENSOR REMARK 3 L11: 2.7895 L22: 2.2893 REMARK 3 L33: 1.8360 L12: -1.2047 REMARK 3 L13: 0.3542 L23: 0.2101 REMARK 3 S TENSOR REMARK 3 S11: -0.1378 S12: -0.1007 S13: 0.4577 REMARK 3 S21: 0.1096 S22: 0.0811 S23: -0.1361 REMARK 3 S31: -0.2346 S32: -0.0336 S33: -0.0112 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7971 0.8247 82.8930 REMARK 3 T TENSOR REMARK 3 T11: 0.6964 T22: 1.0705 REMARK 3 T33: 0.8600 T12: 0.0408 REMARK 3 T13: -0.1731 T23: -0.1635 REMARK 3 L TENSOR REMARK 3 L11: 0.0796 L22: 0.0406 REMARK 3 L33: 0.0799 L12: 0.0662 REMARK 3 L13: -0.0840 L23: -0.0621 REMARK 3 S TENSOR REMARK 3 S11: -0.4695 S12: 0.6560 S13: -0.2744 REMARK 3 S21: -0.1619 S22: 0.0990 S23: 1.0449 REMARK 3 S31: 0.6114 S32: -1.0696 S33: -0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 16 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.2553 -13.8782 90.0554 REMARK 3 T TENSOR REMARK 3 T11: 1.1109 T22: 0.5423 REMARK 3 T33: 0.7686 T12: 0.1114 REMARK 3 T13: -0.1922 T23: -0.1688 REMARK 3 L TENSOR REMARK 3 L11: -0.0124 L22: 0.0489 REMARK 3 L33: 0.2135 L12: 0.0277 REMARK 3 L13: -0.0670 L23: 0.0492 REMARK 3 S TENSOR REMARK 3 S11: 0.1847 S12: 0.4608 S13: -0.4688 REMARK 3 S21: -0.0557 S22: -0.3073 S23: 0.5915 REMARK 3 S31: 1.5567 S32: -0.0757 S33: 0.0019 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5750 -10.5100 82.0381 REMARK 3 T TENSOR REMARK 3 T11: 1.0819 T22: 0.8395 REMARK 3 T33: 0.8054 T12: 0.1488 REMARK 3 T13: -0.1606 T23: -0.3469 REMARK 3 L TENSOR REMARK 3 L11: 0.8201 L22: 4.2434 REMARK 3 L33: 2.1969 L12: -0.0314 REMARK 3 L13: 0.4959 L23: -2.8181 REMARK 3 S TENSOR REMARK 3 S11: 0.4643 S12: 0.7659 S13: -0.4061 REMARK 3 S21: -1.2289 S22: -0.2069 S23: -0.9641 REMARK 3 S31: 0.6018 S32: 0.5711 S33: -0.9509 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 71 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5111 -15.6750 77.7009 REMARK 3 T TENSOR REMARK 3 T11: 1.4110 T22: 0.9588 REMARK 3 T33: 0.8880 T12: 0.1633 REMARK 3 T13: -0.1878 T23: -0.1825 REMARK 3 L TENSOR REMARK 3 L11: 0.0198 L22: 0.0804 REMARK 3 L33: 0.1822 L12: 0.0340 REMARK 3 L13: 0.0141 L23: -0.0877 REMARK 3 S TENSOR REMARK 3 S11: 0.7817 S12: 0.6517 S13: -0.3472 REMARK 3 S21: -0.8684 S22: -0.4534 S23: 0.7471 REMARK 3 S31: 1.1260 S32: -0.5862 S33: 0.0009 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8956 1.0337 70.2277 REMARK 3 T TENSOR REMARK 3 T11: 1.0566 T22: 1.6244 REMARK 3 T33: 0.2602 T12: 0.3325 REMARK 3 T13: 0.0773 T23: 0.0290 REMARK 3 L TENSOR REMARK 3 L11: 1.0961 L22: 0.4658 REMARK 3 L33: 0.1691 L12: -0.2891 REMARK 3 L13: -0.3394 L23: 0.1598 REMARK 3 S TENSOR REMARK 3 S11: 0.9698 S12: 1.7981 S13: -0.0972 REMARK 3 S21: -1.1102 S22: -0.4136 S23: 0.0860 REMARK 3 S31: 0.7613 S32: 0.5761 S33: 0.0811 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 175 THROUGH 221 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0312 6.6688 79.7891 REMARK 3 T TENSOR REMARK 3 T11: 0.7994 T22: 0.9983 REMARK 3 T33: 0.3183 T12: 0.3325 REMARK 3 T13: -0.0246 T23: 0.0818 REMARK 3 L TENSOR REMARK 3 L11: 1.8424 L22: 1.6022 REMARK 3 L33: 0.2566 L12: 0.2063 REMARK 3 L13: 0.0759 L23: 0.2099 REMARK 3 S TENSOR REMARK 3 S11: 0.5907 S12: 1.7893 S13: -0.1690 REMARK 3 S21: -0.9667 S22: -0.1599 S23: 0.2605 REMARK 3 S31: -0.2372 S32: 0.5403 S33: 0.2392 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 222 THROUGH 276 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8635 3.4441 93.5588 REMARK 3 T TENSOR REMARK 3 T11: 0.3640 T22: 0.3702 REMARK 3 T33: 0.3150 T12: 0.1029 REMARK 3 T13: -0.0297 T23: -0.0042 REMARK 3 L TENSOR REMARK 3 L11: 0.5528 L22: 1.1980 REMARK 3 L33: 1.4932 L12: 0.3749 REMARK 3 L13: -0.0190 L23: 0.7114 REMARK 3 S TENSOR REMARK 3 S11: 0.5723 S12: 0.6302 S13: -0.5214 REMARK 3 S21: -0.3605 S22: -0.4080 S23: -0.0851 REMARK 3 S31: 0.1723 S32: 0.1585 S33: 0.0028 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JQ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6-7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI-220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS MARCH 1, 2015 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.8 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30517 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.101 REMARK 200 RESOLUTION RANGE LOW (A) : 37.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10490 REMARK 200 R SYM (I) : 0.11910 REMARK 200 FOR THE DATA SET : 10.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 2.10900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: 3TZN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES (PH 6.5), 14% PEG 20,000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.94850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 PHE A 28 REMARK 465 SER A 29 REMARK 465 ASP A 30 REMARK 465 GLY A 31 REMARK 465 GLY A 32 REMARK 465 CYS A 33 REMARK 465 HIS A 34 REMARK 465 ASN A 35 REMARK 465 PRO A 64 REMARK 465 GLY A 65 REMARK 465 GLY A 143 REMARK 465 GLN A 144 REMARK 465 PRO A 145 REMARK 465 LYS A 146 REMARK 465 ASN A 147 REMARK 465 MET A 148 REMARK 465 LYS A 276 REMARK 465 GLY A 277 REMARK 465 GLY B -1 REMARK 465 PRO B 25 REMARK 465 ASP B 26 REMARK 465 SER B 27 REMARK 465 PHE B 28 REMARK 465 SER B 29 REMARK 465 ASP B 30 REMARK 465 GLY B 31 REMARK 465 GLY B 32 REMARK 465 CYS B 33 REMARK 465 HIS B 34 REMARK 465 ASN B 35 REMARK 465 ARG B 63 REMARK 465 PRO B 64 REMARK 465 GLY B 65 REMARK 465 ALA B 66 REMARK 465 ALA B 67 REMARK 465 GLY B 143 REMARK 465 GLN B 144 REMARK 465 PRO B 145 REMARK 465 LYS B 146 REMARK 465 ASN B 147 REMARK 465 MET B 148 REMARK 465 GLN B 149 REMARK 465 HIS B 150 REMARK 465 SER B 151 REMARK 465 GLY B 277 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 23 CG1 CG2 REMARK 470 ASN A 36 CG OD1 ND2 REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 THR A 62 OG1 CG2 REMARK 470 ARG A 63 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 GLN A 149 CG CD OE1 NE2 REMARK 470 LEU B 8 CG CD1 CD2 REMARK 470 THR B 24 OG1 CG2 REMARK 470 GLN B 39 CG CD OE1 NE2 REMARK 470 LEU B 41 CG CD1 CD2 REMARK 470 ARG B 46 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 57 CG1 CG2 CD1 REMARK 470 GLU B 60 CG CD OE1 OE2 REMARK 470 SER B 61 OG REMARK 470 THR B 62 OG1 CG2 REMARK 470 GLU B 68 CG CD OE1 OE2 REMARK 470 VAL B 69 CG1 CG2 REMARK 470 SER B 70 OG REMARK 470 GLU B 71 CG CD OE1 OE2 REMARK 470 GLN B 72 CG CD OE1 NE2 REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 LEU B 75 CG CD1 CD2 REMARK 470 ASP B 76 CG OD1 OD2 REMARK 470 ARG B 77 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 78 CG1 CG2 REMARK 470 VAL B 81 CG1 CG2 REMARK 470 GLN B 87 CG CD OE1 NE2 REMARK 470 ARG B 88 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 102 CG1 CG2 REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 SER B 106 OG REMARK 470 HIS B 108 CG ND1 CD2 CE1 NE2 REMARK 470 ILE B 114 CG1 CG2 CD1 REMARK 470 SER B 119 OG REMARK 470 LEU B 120 CG CD1 CD2 REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 THR B 132 OG1 CG2 REMARK 470 VAL B 136 CG1 CG2 REMARK 470 GLN B 142 CG CD OE1 NE2 REMARK 470 ASP B 155 CG OD1 OD2 REMARK 470 LEU B 157 CG CD1 CD2 REMARK 470 ILE B 161 CG1 CG2 CD1 REMARK 470 ARG B 163 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 169 CG1 CG2 CD1 REMARK 470 CYS B 172 SG REMARK 470 ILE B 177 CG1 CG2 CD1 REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 LYS B 181 CG CD CE NZ REMARK 470 LEU B 182 CG CD1 CD2 REMARK 470 HIS B 196 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 233 CG CD OE1 NE2 REMARK 470 LYS B 276 CG CD CE NZ REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 470 DISTANCE = 5.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6MB A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6MB B 301 DBREF1 5JQ9 A 1 277 UNP A0A0J9WZK8_YERPE DBREF2 5JQ9 A A0A0J9WZK8 1 277 DBREF1 5JQ9 B 1 277 UNP A0A0J9WZK8_YERPE DBREF2 5JQ9 B A0A0J9WZK8 1 277 SEQADV 5JQ9 GLY A -1 UNP A0A0J9WZK EXPRESSION TAG SEQADV 5JQ9 SER A 0 UNP A0A0J9WZK EXPRESSION TAG SEQADV 5JQ9 GLY B -1 UNP A0A0J9WZK EXPRESSION TAG SEQADV 5JQ9 SER B 0 UNP A0A0J9WZK EXPRESSION TAG SEQRES 1 A 279 GLY SER MET HIS LEU THR ALA ARG GLY LEU THR LEU ASP SEQRES 2 A 279 LEU SER ARG PRO GLN VAL MET GLY ILE LEU ASN VAL THR SEQRES 3 A 279 PRO ASP SER PHE SER ASP GLY GLY CYS HIS ASN ASN LEU SEQRES 4 A 279 ASP GLN ALA LEU GLN HIS ALA GLN ARG MET LEU SER ALA SEQRES 5 A 279 GLY ALA THR LEU ILE ASP ILE GLY GLY GLU SER THR ARG SEQRES 6 A 279 PRO GLY ALA ALA GLU VAL SER GLU GLN GLU GLU LEU ASP SEQRES 7 A 279 ARG VAL VAL PRO VAL VAL GLU ALA LEU ALA GLN ARG PHE SEQRES 8 A 279 ASP VAL TRP LEU SER VAL ASP THR SER LYS ALA ALA VAL SEQRES 9 A 279 ILE THR GLU SER ALA HIS ALA GLY ALA HIS LEU ILE ASN SEQRES 10 A 279 ASP ILE ARG SER LEU GLN GLU PRO GLY ALA LEU GLU ALA SEQRES 11 A 279 ALA ALA LYS THR GLY LEU PRO VAL CYS LEU MET HIS MET SEQRES 12 A 279 GLN GLY GLN PRO LYS ASN MET GLN HIS SER PRO TYR TYR SEQRES 13 A 279 ASP ASP LEU MET THR ASP ILE ASN ARG PHE PHE GLN HIS SEQRES 14 A 279 HIS ILE GLU ARG CYS VAL ALA ALA GLY ILE ALA LYS ASN SEQRES 15 A 279 LYS LEU LEU LEU ASP PRO GLY PHE GLY PHE GLY LYS ASN SEQRES 16 A 279 LEU ALA HIS ASN TYR GLN LEU LEU ALA HIS LEU SER GLU SEQRES 17 A 279 LEU HIS HIS PHE GLU LEU PRO LEU LEU VAL GLY MET SER SEQRES 18 A 279 ARG LYS SER MET VAL GLY GLN LEU LEU ASN VAL PRO PRO SEQRES 19 A 279 GLN GLN ARG VAL ILE GLY SER VAL ALA CYS ALA VAL ILE SEQRES 20 A 279 ALA ALA MET GLN GLY ALA GLN ILE ILE ARG VAL HIS ASP SEQRES 21 A 279 VAL LYS GLU THR VAL GLU ALA MET CYS ILE VAL GLU ALA SEQRES 22 A 279 THR ARG SER ALA LYS GLY SEQRES 1 B 279 GLY SER MET HIS LEU THR ALA ARG GLY LEU THR LEU ASP SEQRES 2 B 279 LEU SER ARG PRO GLN VAL MET GLY ILE LEU ASN VAL THR SEQRES 3 B 279 PRO ASP SER PHE SER ASP GLY GLY CYS HIS ASN ASN LEU SEQRES 4 B 279 ASP GLN ALA LEU GLN HIS ALA GLN ARG MET LEU SER ALA SEQRES 5 B 279 GLY ALA THR LEU ILE ASP ILE GLY GLY GLU SER THR ARG SEQRES 6 B 279 PRO GLY ALA ALA GLU VAL SER GLU GLN GLU GLU LEU ASP SEQRES 7 B 279 ARG VAL VAL PRO VAL VAL GLU ALA LEU ALA GLN ARG PHE SEQRES 8 B 279 ASP VAL TRP LEU SER VAL ASP THR SER LYS ALA ALA VAL SEQRES 9 B 279 ILE THR GLU SER ALA HIS ALA GLY ALA HIS LEU ILE ASN SEQRES 10 B 279 ASP ILE ARG SER LEU GLN GLU PRO GLY ALA LEU GLU ALA SEQRES 11 B 279 ALA ALA LYS THR GLY LEU PRO VAL CYS LEU MET HIS MET SEQRES 12 B 279 GLN GLY GLN PRO LYS ASN MET GLN HIS SER PRO TYR TYR SEQRES 13 B 279 ASP ASP LEU MET THR ASP ILE ASN ARG PHE PHE GLN HIS SEQRES 14 B 279 HIS ILE GLU ARG CYS VAL ALA ALA GLY ILE ALA LYS ASN SEQRES 15 B 279 LYS LEU LEU LEU ASP PRO GLY PHE GLY PHE GLY LYS ASN SEQRES 16 B 279 LEU ALA HIS ASN TYR GLN LEU LEU ALA HIS LEU SER GLU SEQRES 17 B 279 LEU HIS HIS PHE GLU LEU PRO LEU LEU VAL GLY MET SER SEQRES 18 B 279 ARG LYS SER MET VAL GLY GLN LEU LEU ASN VAL PRO PRO SEQRES 19 B 279 GLN GLN ARG VAL ILE GLY SER VAL ALA CYS ALA VAL ILE SEQRES 20 B 279 ALA ALA MET GLN GLY ALA GLN ILE ILE ARG VAL HIS ASP SEQRES 21 B 279 VAL LYS GLU THR VAL GLU ALA MET CYS ILE VAL GLU ALA SEQRES 22 B 279 THR ARG SER ALA LYS GLY HET 6MB A 301 31 HET EDO A 302 4 HET 6MB B 301 31 HETNAM 6MB 4-{[(2-AMINO-4-OXO-3,4-DIHYDROPTERIDIN-6-YL) HETNAM 2 6MB METHYL]AMINO}-N-(3,4-DIMETHYL-1,2-OXAZOL-5-YL)BENZENE- HETNAM 3 6MB 1-SULFONAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 6MB 2(C18 H18 N8 O4 S) FORMUL 4 EDO C2 H6 O2 FORMUL 6 HOH *101(H2 O) HELIX 1 AA1 LEU A 37 GLY A 51 1 15 HELIX 2 AA2 SER A 70 PHE A 89 1 20 HELIX 3 AA3 LYS A 99 GLY A 110 1 12 HELIX 4 AA4 GLY A 124 GLY A 133 1 10 HELIX 5 AA5 ASP A 156 GLY A 176 1 21 HELIX 6 AA6 ALA A 178 ASN A 180 5 3 HELIX 7 AA7 ASN A 193 HIS A 203 1 11 HELIX 8 AA8 LEU A 204 GLU A 211 5 8 HELIX 9 AA9 LYS A 221 ASN A 229 1 9 HELIX 10 AB1 PRO A 231 GLN A 234 5 4 HELIX 11 AB2 ARG A 235 GLN A 249 1 15 HELIX 12 AB3 ASP A 258 ALA A 275 1 18 HELIX 13 AB4 LEU B 37 GLY B 51 1 15 HELIX 14 AB5 SER B 70 PHE B 89 1 20 HELIX 15 AB6 LYS B 99 GLY B 110 1 12 HELIX 16 AB7 GLY B 124 GLY B 133 1 10 HELIX 17 AB8 ASP B 156 ALA B 175 1 20 HELIX 18 AB9 ALA B 178 ASN B 180 5 3 HELIX 19 AC1 ASN B 193 HIS B 203 1 11 HELIX 20 AC2 LEU B 204 GLU B 211 5 8 HELIX 21 AC3 LYS B 221 ASN B 229 1 9 HELIX 22 AC4 PRO B 231 GLN B 234 5 4 HELIX 23 AC5 ARG B 235 GLN B 249 1 15 HELIX 24 AC6 ASP B 258 ALA B 275 1 18 SHEET 1 AA1 2 HIS A 2 ALA A 5 0 SHEET 2 AA1 2 LEU A 8 ASP A 11 -1 O LEU A 10 N LEU A 3 SHEET 1 AA2 8 LEU A 182 ASP A 185 0 SHEET 2 AA2 8 VAL A 136 MET A 139 1 N LEU A 138 O LEU A 183 SHEET 3 AA2 8 LEU A 113 ASP A 116 1 N ILE A 114 O CYS A 137 SHEET 4 AA2 8 TRP A 92 ASP A 96 1 N LEU A 93 O LEU A 113 SHEET 5 AA2 8 LEU A 54 GLY A 58 1 N ILE A 57 O SER A 94 SHEET 6 AA2 8 GLN A 16 ASN A 22 1 N GLY A 19 O ASP A 56 SHEET 7 AA2 8 ILE A 253 VAL A 256 1 O ILE A 254 N MET A 18 SHEET 8 AA2 8 LEU A 215 GLY A 217 1 N VAL A 216 O ARG A 255 SHEET 1 AA3 2 HIS B 2 ALA B 5 0 SHEET 2 AA3 2 LEU B 8 ASP B 11 -1 O LEU B 10 N LEU B 3 SHEET 1 AA4 8 LEU B 182 ASP B 185 0 SHEET 2 AA4 8 VAL B 136 MET B 139 1 N LEU B 138 O LEU B 183 SHEET 3 AA4 8 LEU B 113 ASP B 116 1 N ILE B 114 O CYS B 137 SHEET 4 AA4 8 TRP B 92 ASP B 96 1 N LEU B 93 O LEU B 113 SHEET 5 AA4 8 LEU B 54 GLY B 58 1 N ILE B 57 O ASP B 96 SHEET 6 AA4 8 GLN B 16 ASN B 22 1 N GLY B 19 O ASP B 56 SHEET 7 AA4 8 ILE B 253 VAL B 256 1 O ILE B 254 N MET B 18 SHEET 8 AA4 8 LEU B 215 GLY B 217 1 N VAL B 216 O ARG B 255 SITE 1 AC1 12 ASP A 96 ASN A 115 ASP A 185 GLY A 189 SITE 2 AC1 12 PHE A 190 LEU A 215 GLY A 217 LYS A 221 SITE 3 AC1 12 SER A 222 ARG A 255 HOH A 416 HOH A 418 SITE 1 AC2 6 MET A 47 HIS A 257 VAL A 259 LYS A 260 SITE 2 AC2 6 HOH A 407 HOH A 440 SITE 1 AC3 11 ASP B 96 ASN B 115 MET B 139 ASP B 185 SITE 2 AC3 11 GLY B 189 PHE B 190 LEU B 215 GLY B 217 SITE 3 AC3 11 LYS B 221 SER B 222 ARG B 255 CRYST1 70.687 49.897 74.279 90.00 89.78 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014147 0.000000 -0.000053 0.00000 SCALE2 0.000000 0.020041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013463 0.00000