HEADER IMMUNE SYSTEM 05-MAY-16 5JR1 TITLE CRYSTAL STRUCTURE OF 10E8 GHV-MATUREL ANTIGEN-BINDING FRAGMENT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 10E8 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 10E8 MATURE LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS MPER, HIV-1, ANTIBODY DEVELOPMENT, NEUTRALIZING, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.G.JOYCE,J.R.MASCOLA,P.D.KWONG REVDAT 3 06-NOV-24 5JR1 1 REMARK REVDAT 2 27-SEP-23 5JR1 1 REMARK LINK REVDAT 1 13-JUL-16 5JR1 0 JRNL AUTH C.SOTO,G.OFEK,M.G.JOYCE,B.ZHANG,K.MCKEE,N.S.LONGO,Y.YANG, JRNL AUTH 2 J.HUANG,R.PARKS,J.EUDAILEY,K.E.LLOYD,S.M.ALAM,B.F.HAYNES, JRNL AUTH 3 J.C.MULLIKIN,M.CONNORS,J.R.MASCOLA,L.SHAPIRO,P.D.KWONG JRNL TITL DEVELOPMENTAL PATHWAY OF THE MPER-DIRECTED JRNL TITL 2 HIV-1-NEUTRALIZING ANTIBODY 10E8. JRNL REF PLOS ONE V. 11 57409 2016 JRNL REFN ESSN 1932-6203 JRNL PMID 27299673 JRNL DOI 10.1371/JOURNAL.PONE.0157409 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.5 REMARK 3 NUMBER OF REFLECTIONS : 51379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2565 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.3158 - 4.1930 0.75 2553 142 0.1822 0.1863 REMARK 3 2 4.1930 - 3.3288 0.79 2581 146 0.1648 0.1772 REMARK 3 3 3.3288 - 2.9082 0.81 2650 110 0.1846 0.1940 REMARK 3 4 2.9082 - 2.6424 0.82 2634 133 0.1809 0.2111 REMARK 3 5 2.6424 - 2.4530 0.83 2694 134 0.1845 0.2187 REMARK 3 6 2.4530 - 2.3084 0.84 2685 146 0.1888 0.2067 REMARK 3 7 2.3084 - 2.1928 0.85 2725 140 0.1742 0.1884 REMARK 3 8 2.1928 - 2.0974 0.86 2736 138 0.1672 0.1907 REMARK 3 9 2.0974 - 2.0166 0.86 2742 148 0.1751 0.1766 REMARK 3 10 2.0166 - 1.9471 0.87 2775 147 0.1732 0.2082 REMARK 3 11 1.9471 - 1.8862 0.87 2785 133 0.1828 0.1961 REMARK 3 12 1.8862 - 1.8323 0.88 2805 143 0.1970 0.2202 REMARK 3 13 1.8323 - 1.7840 0.88 2802 171 0.2061 0.2150 REMARK 3 14 1.7840 - 1.7405 0.89 2812 141 0.2195 0.2529 REMARK 3 15 1.7405 - 1.7009 0.89 2787 160 0.2413 0.2703 REMARK 3 16 1.7009 - 1.6647 0.89 2832 162 0.2512 0.3013 REMARK 3 17 1.6647 - 1.6314 0.88 2775 151 0.2654 0.2944 REMARK 3 18 1.6314 - 1.6007 0.77 2441 120 0.2888 0.3208 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3419 REMARK 3 ANGLE : 1.075 4660 REMARK 3 CHIRALITY : 0.063 517 REMARK 3 PLANARITY : 0.007 596 REMARK 3 DIHEDRAL : 15.701 2045 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.3818 20.7290 114.2742 REMARK 3 T TENSOR REMARK 3 T11: 0.2854 T22: 0.2556 REMARK 3 T33: 0.2109 T12: -0.0624 REMARK 3 T13: 0.0168 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.9847 L22: 3.7279 REMARK 3 L33: 1.9487 L12: 1.5815 REMARK 3 L13: -0.6388 L23: -1.7455 REMARK 3 S TENSOR REMARK 3 S11: 0.2335 S12: -0.3342 S13: 0.0992 REMARK 3 S21: 0.4560 S22: -0.2282 S23: 0.0658 REMARK 3 S31: -0.0748 S32: 0.0840 S33: 0.0022 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 112 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3418 -4.0951 103.7299 REMARK 3 T TENSOR REMARK 3 T11: 0.2420 T22: 0.1908 REMARK 3 T33: 0.2049 T12: -0.0016 REMARK 3 T13: 0.0322 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 3.3233 L22: 3.4204 REMARK 3 L33: 3.7865 L12: 0.4220 REMARK 3 L13: 0.4377 L23: -0.9289 REMARK 3 S TENSOR REMARK 3 S11: -0.0095 S12: -0.1037 S13: -0.1620 REMARK 3 S21: -0.0428 S22: 0.0084 S23: 0.1267 REMARK 3 S31: 0.1085 S32: 0.0708 S33: -0.0142 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 2 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7030 23.0233 91.5357 REMARK 3 T TENSOR REMARK 3 T11: 0.1766 T22: 0.3342 REMARK 3 T33: 0.2498 T12: 0.0212 REMARK 3 T13: 0.0139 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.2079 L22: 4.5498 REMARK 3 L33: 5.0417 L12: 0.1209 REMARK 3 L13: -0.1368 L23: 3.3998 REMARK 3 S TENSOR REMARK 3 S11: -0.1641 S12: -0.3533 S13: -0.0276 REMARK 3 S21: 0.3893 S22: -0.2741 S23: 0.5176 REMARK 3 S31: 0.1683 S32: -0.5832 S33: 0.3543 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 18 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.3399 26.4035 93.2434 REMARK 3 T TENSOR REMARK 3 T11: 0.1409 T22: 0.1616 REMARK 3 T33: 0.1754 T12: -0.0132 REMARK 3 T13: 0.0290 T23: 0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.2654 L22: 1.4881 REMARK 3 L33: 3.1956 L12: 0.1295 REMARK 3 L13: 0.4178 L23: 1.0101 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: -0.0597 S13: 0.1074 REMARK 3 S21: 0.0065 S22: -0.0797 S23: 0.1020 REMARK 3 S31: -0.1549 S32: -0.1777 S33: 0.0091 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 84 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.5326 26.4110 101.8740 REMARK 3 T TENSOR REMARK 3 T11: 0.2531 T22: 0.2494 REMARK 3 T33: 0.2068 T12: 0.0077 REMARK 3 T13: 0.0359 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 1.7931 L22: 3.4827 REMARK 3 L33: 4.8368 L12: 0.3565 REMARK 3 L13: 0.3413 L23: 1.5249 REMARK 3 S TENSOR REMARK 3 S11: 0.0731 S12: -0.2521 S13: 0.2014 REMARK 3 S21: 0.5073 S22: -0.1581 S23: 0.1696 REMARK 3 S31: -0.2986 S32: -0.5582 S33: 0.1781 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 106A THROUGH 151 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3183 9.1085 98.0140 REMARK 3 T TENSOR REMARK 3 T11: 0.1330 T22: 0.1549 REMARK 3 T33: 0.1570 T12: 0.0068 REMARK 3 T13: 0.0057 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 2.4711 L22: 1.9543 REMARK 3 L33: 2.3552 L12: 0.5497 REMARK 3 L13: -1.4653 L23: -0.1172 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: -0.2041 S13: -0.0980 REMARK 3 S21: 0.2459 S22: 0.0312 S23: 0.2008 REMARK 3 S31: 0.1679 S32: 0.0756 S33: 0.0188 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 152 THROUGH 210 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6912 13.5794 100.2657 REMARK 3 T TENSOR REMARK 3 T11: 0.1800 T22: 0.1642 REMARK 3 T33: 0.1996 T12: -0.0267 REMARK 3 T13: 0.0007 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 3.4456 L22: 2.7557 REMARK 3 L33: 3.6233 L12: 0.4564 REMARK 3 L13: -1.2984 L23: -0.6160 REMARK 3 S TENSOR REMARK 3 S11: 0.0637 S12: -0.2370 S13: 0.0382 REMARK 3 S21: 0.3401 S22: -0.0559 S23: 0.2183 REMARK 3 S31: -0.0801 S32: 0.0713 S33: -0.0215 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51383 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.6 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.8300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4G6F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 21% PEG 8000, 0.17M ZNAC, MES, PH6.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.39200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.50150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.93150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.50150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.39200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.93150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 SER L 1 REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 HIS L 189 O HOH L 402 1.22 REMARK 500 HZ1 LYS H 143 O HOH H 405 1.38 REMARK 500 HE2 HIS H 164 O HOH L 403 1.42 REMARK 500 H TYR L 87 O HOH L 401 1.45 REMARK 500 H LEU H 45 O HOH H 404 1.47 REMARK 500 OD1 ASP H 53 H GLY H 54 1.48 REMARK 500 H TYR L 36 O HOH L 401 1.52 REMARK 500 HZ1 LYS L 130 O HOH L 404 1.53 REMARK 500 H ALA H 61 O HOH H 410 1.57 REMARK 500 O HOH H 460 O HOH H 521 1.78 REMARK 500 O HOH L 415 O HOH L 518 1.82 REMARK 500 O TYR L 87 O HOH L 401 1.82 REMARK 500 O HOH L 410 O HOH L 516 1.84 REMARK 500 O HOH H 536 O HOH H 545 1.85 REMARK 500 O HOH L 427 O HOH L 543 1.91 REMARK 500 O TYR L 36 O HOH L 401 1.91 REMARK 500 O HOH H 504 O HOH H 517 1.93 REMARK 500 OD2 ASP L 152 O HOH L 402 1.93 REMARK 500 O HOH H 518 O HOH L 584 1.94 REMARK 500 OD2 ASP L 139 O HOH L 403 1.97 REMARK 500 ND1 HIS L 189 O HOH L 402 1.97 REMARK 500 O HOH H 524 O HOH H 532 1.98 REMARK 500 O HOH L 403 O HOH L 566 1.99 REMARK 500 O HOH L 405 O HOH L 566 2.01 REMARK 500 NZ LYS H 117 O HOH H 401 2.01 REMARK 500 O HOH H 526 O HOH L 405 2.03 REMARK 500 O HOH H 488 O HOH L 577 2.04 REMARK 500 NZ LYS L 130 O HOH L 404 2.04 REMARK 500 OD2 ASP L 139 O HOH L 405 2.04 REMARK 500 O HOH L 403 O HOH L 405 2.05 REMARK 500 O HOH L 573 O HOH L 592 2.08 REMARK 500 O HOH H 427 O HOH L 540 2.09 REMARK 500 OE1 GLN L 42 O HOH L 406 2.09 REMARK 500 NH2 ARG L 17 O HOH L 407 2.10 REMARK 500 O HOH L 414 O HOH L 459 2.11 REMARK 500 O HOH L 523 O HOH L 585 2.11 REMARK 500 OE2 GLU L 7 O HOH L 408 2.14 REMARK 500 O HOH H 526 O HOH L 566 2.14 REMARK 500 O HOH H 478 O HOH H 523 2.15 REMARK 500 N TYR L 87 O HOH L 401 2.17 REMARK 500 OG SER H 161 O HOH H 402 2.17 REMARK 500 NZ LYS H 143 O HOH H 403 2.18 REMARK 500 O HOH H 412 O HOH H 463 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 515 O HOH H 517 3647 1.86 REMARK 500 OD2 ASP H 208 O HOH L 402 3547 2.03 REMARK 500 O HOH H 539 O HOH L 541 2555 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP H 100 C PHE H 100A N 0.164 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA H 88 164.06 179.95 REMARK 500 ASP H 100 -153.09 -111.75 REMARK 500 ASP H 144 62.12 60.51 REMARK 500 ASN L 52 26.89 -150.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP H 100 OD2 REMARK 620 2 GLU H 100I OE2 102.1 REMARK 620 3 HIS L 31 ND1 116.4 101.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 60 OD2 REMARK 620 2 HIS L 198 ND1 25.7 REMARK 620 3 HOH L 450 O 20.8 5.3 REMARK 620 4 HOH L 568 O 22.2 5.5 5.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN L 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5IQ7 RELATED DB: PDB REMARK 900 RELATED ID: 5IQ9 RELATED DB: PDB REMARK 900 RELATED ID: 4U6G RELATED DB: PDB REMARK 900 RELATED ID: 4G6F RELATED DB: PDB DBREF 5JR1 H 1 218 PDB 5JR1 5JR1 1 218 DBREF 5JR1 L 1 213 PDB 5JR1 5JR1 1 213 SEQRES 1 H 236 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 236 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 236 PHE THR PHE SER ASN ALA TRP MET SER TRP VAL ARG GLN SEQRES 4 H 236 ALA PRO GLY LYS GLY LEU GLU TRP VAL GLY ARG ILE LYS SEQRES 5 H 236 SER LYS THR ASP GLY GLY THR THR ASP TYR ALA ALA PRO SEQRES 6 H 236 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 H 236 ASN THR LEU TYR LEU GLN MET ASN SER LEU LYS THR GLU SEQRES 8 H 236 ASP THR ALA VAL TYR TYR CYS ALA ARG THR GLY LYS TYR SEQRES 9 H 236 TYR ASP PHE TRP SER GLY TYR PRO PRO GLY GLU GLU TYR SEQRES 10 H 236 PHE GLN ASP TRP GLY ARG GLY THR LEU VAL THR VAL SER SEQRES 11 H 236 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 12 H 236 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 13 H 236 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 14 H 236 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 15 H 236 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 16 H 236 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 17 H 236 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 18 H 236 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 19 H 236 ASP LYS SEQRES 1 L 215 SER TYR GLU LEU THR GLN GLU THR GLY VAL SER VAL ALA SEQRES 2 L 215 LEU GLY ARG THR VAL THR ILE THR CYS ARG GLY ASP SER SEQRES 3 L 215 LEU ARG SER HIS TYR ALA SER TRP TYR GLN LYS LYS PRO SEQRES 4 L 215 GLY GLN ALA PRO ILE LEU LEU PHE TYR GLY LYS ASN ASN SEQRES 5 L 215 ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SER ALA SEQRES 6 L 215 SER GLY ASN ARG ALA SER LEU THR ILE SER GLY ALA GLN SEQRES 7 L 215 ALA GLU ASP ASP ALA GLU TYR TYR CYS SER SER ARG ASP SEQRES 8 L 215 LYS SER GLY SER ARG LEU SER VAL PHE GLY GLY GLY THR SEQRES 9 L 215 LYS LEU THR VAL LEU SER GLN PRO LYS ALA ALA PRO SER SEQRES 10 L 215 VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA SEQRES 11 L 215 ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR SEQRES 12 L 215 PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER SEQRES 13 L 215 PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER LYS SEQRES 14 L 215 GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER SEQRES 15 L 215 LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER SEQRES 16 L 215 CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS THR SEQRES 17 L 215 VAL ALA PRO THR GLU CYS SER HET ZN H 301 1 HET ZN L 301 1 HETNAM ZN ZINC ION FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *342(H2 O) HELIX 1 AA1 THR H 28 ALA H 32 5 5 HELIX 2 AA2 ALA H 61 LYS H 64 5 4 HELIX 3 AA3 ASP H 73 LYS H 75 5 3 HELIX 4 AA4 LYS H 83 THR H 87 5 5 HELIX 5 AA5 SER H 156 ALA H 158 5 3 HELIX 6 AA6 SER H 187 LEU H 189 5 3 HELIX 7 AA7 LYS H 201 ASN H 204 5 4 HELIX 8 AA8 ASP L 26 SER L 30 5 5 HELIX 9 AA9 GLN L 79 ASP L 83 5 5 HELIX 10 AB1 SER L 122 ALA L 128 1 7 HELIX 11 AB2 THR L 182 HIS L 189 1 8 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA1 4 THR H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA2 6 ALA H 88 TYR H 98 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 TRP H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O VAL H 48 N TRP H 36 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ASP H 58 N ARG H 50 SHEET 1 AA3 4 GLY H 10 VAL H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA3 4 ALA H 88 TYR H 98 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 GLU H 100I TRP H 103 -1 O GLU H 100I N TYR H 98 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 4 THR L 5 GLN L 6 0 SHEET 2 AA7 4 THR L 18 ARG L 24 -1 O ARG L 24 N THR L 5 SHEET 3 AA7 4 ARG L 70 SER L 76 -1 O ALA L 71 N CYS L 23 SHEET 4 AA7 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AA8 5 GLY L 9 VAL L 13 0 SHEET 2 AA8 5 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 AA8 5 ALA L 84 ARG L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA8 5 SER L 34 LYS L 38 -1 N LYS L 38 O GLU L 85 SHEET 5 AA8 5 ILE L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 1 AA9 4 GLY L 9 VAL L 13 0 SHEET 2 AA9 4 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 AA9 4 ALA L 84 ARG L 91 -1 N ALA L 84 O LEU L 104 SHEET 4 AA9 4 SER L 96 PHE L 98 -1 O VAL L 97 N SER L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 116 SHEET 3 AB1 4 TYR L 173 LEU L 181 -1 O SER L 177 N CYS L 135 SHEET 4 AB1 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 AB2 4 SER L 114 PHE L 118 0 SHEET 2 AB2 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 116 SHEET 3 AB2 4 TYR L 173 LEU L 181 -1 O SER L 177 N CYS L 135 SHEET 4 AB2 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 AB3 4 SER L 154 VAL L 156 0 SHEET 2 AB3 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 AB3 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 148 SHEET 4 AB3 4 SER L 201 VAL L 207 -1 O VAL L 203 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.05 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.01 SSBOND 4 CYS L 135 CYS L 194 1555 1555 2.07 LINK OD2 ASP H 100 ZN ZN H 301 1555 1555 2.06 LINK OE2 GLU H 100I ZN ZN H 301 1555 1555 2.02 LINK ZN ZN H 301 ND1 HIS L 31 1555 1555 2.05 LINK OD2 ASP L 60 ZN ZN L 301 1555 4557 1.98 LINK ND1 HIS L 198 ZN ZN L 301 1555 1555 2.03 LINK ZN ZN L 301 O HOH L 450 1555 1555 2.05 LINK ZN ZN L 301 O HOH L 568 1555 1555 2.22 CISPEP 1 TYR H 100E PRO H 100F 0 -10.26 CISPEP 2 PHE H 146 PRO H 147 0 -7.35 CISPEP 3 GLU H 148 PRO H 149 0 -4.83 CISPEP 4 TYR L 141 PRO L 142 0 -1.12 SITE 1 AC1 3 ASP H 100 GLU H 100I HIS L 31 SITE 1 AC2 4 ASP L 60 HIS L 198 HOH L 450 HOH L 568 CRYST1 68.784 77.863 85.003 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012843 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011764 0.00000