HEADER SIGNALING PROTEIN 06-MAY-16 5JRU TITLE CRYSTAL STRUCTURE OF FE(II) UNLIGANDED H-NOX PROTEIN FROM C. TITLE 2 SUBTERRANEUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYL-ACCEPTING CHEMOTAXIS PROTEIN; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 FRAGMENT: UNP RESIDUES 1-188; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDANAEROBACTER SUBTERRANEUS SUBSP. SOURCE 3 TENGCONGENSIS (STRAIN DSM 15242 / JCM 11007 / NBRC 100824 / MB4); SOURCE 4 ORGANISM_TAXID: 273068; SOURCE 5 STRAIN: DSM 15242 / JCM 11007 / NBRC 100824 / MB4; SOURCE 6 GENE: TAR4, TTE0680; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: RP523 (DE3) KEYWDS HEME-BASED METHYL-ACCEPTING CHEMOTAXIS PROTEIN GAS BINDING SIGNALING KEYWDS 2 PROTEIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BRUEGGER,C.HESPEN,C.M.PHILLIPS-PIRO,M.A.MARLETTA REVDAT 3 27-SEP-23 5JRU 1 REMARK REVDAT 2 31-AUG-16 5JRU 1 JRNL REVDAT 1 06-JUL-16 5JRU 0 JRNL AUTH C.W.HESPEN,J.J.BRUEGGER,C.M.PHILLIPS-PIRO,M.A.MARLETTA JRNL TITL STRUCTURAL AND FUNCTIONAL EVIDENCE INDICATES SELECTIVE JRNL TITL 2 OXYGEN SIGNALING IN CALDANAEROBACTER SUBTERRANEUS H-NOX. JRNL REF ACS CHEM.BIOL. V. 11 2337 2016 JRNL REFN ESSN 1554-8937 JRNL PMID 27328180 JRNL DOI 10.1021/ACSCHEMBIO.6B00431 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 55562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.590 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.9279 - 5.5518 1.00 3961 147 0.1774 0.2266 REMARK 3 2 5.5518 - 4.4079 1.00 3885 144 0.1699 0.2150 REMARK 3 3 4.4079 - 3.8510 1.00 3850 144 0.1689 0.2097 REMARK 3 4 3.8510 - 3.4991 1.00 3831 142 0.1844 0.2643 REMARK 3 5 3.4991 - 3.2484 1.00 3858 145 0.1989 0.2336 REMARK 3 6 3.2484 - 3.0569 1.00 3832 143 0.2003 0.3248 REMARK 3 7 3.0569 - 2.9038 1.00 3849 143 0.2060 0.2564 REMARK 3 8 2.9038 - 2.7774 1.00 3785 141 0.2027 0.2781 REMARK 3 9 2.7774 - 2.6705 1.00 3848 143 0.2098 0.2913 REMARK 3 10 2.6705 - 2.5784 1.00 3795 142 0.2093 0.2818 REMARK 3 11 2.5784 - 2.4978 1.00 3819 143 0.2072 0.2930 REMARK 3 12 2.4978 - 2.4264 1.00 3803 141 0.2086 0.2712 REMARK 3 13 2.4264 - 2.3625 1.00 3834 144 0.2260 0.3013 REMARK 3 14 2.3625 - 2.3049 0.95 3615 135 0.2319 0.3199 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 9683 REMARK 3 ANGLE : 1.646 13080 REMARK 3 CHIRALITY : 0.066 1343 REMARK 3 PLANARITY : 0.008 1630 REMARK 3 DIHEDRAL : 14.897 3680 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JRU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221004. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99994 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55562 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 44.920 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 2.010 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.18000 REMARK 200 FOR THE DATA SET : 17.1200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3LAH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ANAEROBICALLY GROWN UNDER ARGON. 30 REMARK 280 MG/ML PROTEIN WITH WELL CONDITION OF 0.1 M NAI, 22% PEG 3350., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.22300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -115.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 187 REMARK 465 ASN A 188 REMARK 465 LYS B 186 REMARK 465 LYS B 187 REMARK 465 ASN B 188 REMARK 465 TYR C 185 REMARK 465 LYS C 186 REMARK 465 LYS C 187 REMARK 465 ASN C 188 REMARK 465 ASN D 188 REMARK 465 LYS E 187 REMARK 465 ASN E 188 REMARK 465 ASN F 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 100 O HOH C 301 1.89 REMARK 500 OE1 GLU C 128 O HOH C 302 2.02 REMARK 500 NZ LYS A 110 O HOH A 301 2.02 REMARK 500 NH2 ARG D 72 O HOH D 301 2.03 REMARK 500 OD2 ASP B 42 O HOH B 301 2.04 REMARK 500 OG SER F 56 O LYS F 61 2.05 REMARK 500 OE2 GLU D 65 O HOH D 301 2.06 REMARK 500 O HOH A 364 O HOH A 367 2.06 REMARK 500 N LYS F 136 O HOH F 301 2.11 REMARK 500 O HOH C 334 O HOH C 372 2.11 REMARK 500 NH2 ARG D 116 O HOH D 302 2.11 REMARK 500 O THR A 59 O HOH A 302 2.14 REMARK 500 O HOH F 361 O HOH F 373 2.14 REMARK 500 OG SER E 56 O LYS E 61 2.14 REMARK 500 O TYR E 185 O HOH E 301 2.14 REMARK 500 O PHE D 152 O HOH D 303 2.14 REMARK 500 N LYS E 179 O HOH E 302 2.16 REMARK 500 OE2 GLU D 57 O HOH D 304 2.16 REMARK 500 OG SER D 56 O LYS D 61 2.16 REMARK 500 OH TYR A 131 O2D HEM A 201 2.16 REMARK 500 O HOH C 311 O HOH C 368 2.16 REMARK 500 OD2 ASP E 125 O HOH E 303 2.16 REMARK 500 NH2 ARG F 14 OD1 ASP F 23 2.17 REMARK 500 NE1 TRP E 31 OE1 GLU E 47 2.17 REMARK 500 NH1 ARG F 68 OE2 GLU F 146 2.18 REMARK 500 NZ LYS A 124 O ILE F 37 2.19 REMARK 500 NH2 ARG B 50 O HOH B 302 2.19 REMARK 500 O HOH A 307 O HOH A 388 2.19 REMARK 500 NH2 ARG C 135 O HOH C 303 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 366 O HOH D 365 2544 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 137 60.97 -111.99 REMARK 500 ASP A 167 60.78 31.24 REMARK 500 PHE A 183 76.71 -117.68 REMARK 500 MET B 137 60.73 -113.74 REMARK 500 GLU B 165 61.90 -111.08 REMARK 500 LYS B 166 -81.80 -36.77 REMARK 500 ASP B 167 -133.87 -86.85 REMARK 500 PHE B 183 73.63 -114.88 REMARK 500 MET C 137 61.90 -116.33 REMARK 500 GLU C 165 77.10 -118.12 REMARK 500 ASP C 167 30.62 79.26 REMARK 500 PHE C 183 73.76 -117.06 REMARK 500 MET D 137 60.88 -119.72 REMARK 500 ASP D 167 65.68 35.42 REMARK 500 PHE D 183 73.66 -116.31 REMARK 500 LYS D 186 -165.69 -118.07 REMARK 500 MET E 137 62.01 -115.52 REMARK 500 ASP E 167 44.69 36.68 REMARK 500 PHE E 183 72.70 -119.92 REMARK 500 MET F 137 61.53 -118.49 REMARK 500 ASP F 167 67.76 31.63 REMARK 500 PHE F 183 71.32 -118.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP F 20 VAL F 21 143.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 102 NE2 REMARK 620 2 HEM A 201 NA 103.7 REMARK 620 3 HEM A 201 NB 90.5 89.4 REMARK 620 4 HEM A 201 NC 94.7 160.6 84.2 REMARK 620 5 HEM A 201 ND 105.9 87.9 163.6 93.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 102 NE2 REMARK 620 2 HEM B 201 NA 95.3 REMARK 620 3 HEM B 201 NB 86.4 92.3 REMARK 620 4 HEM B 201 NC 98.4 165.4 83.7 REMARK 620 5 HEM B 201 ND 105.1 86.7 168.4 94.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 102 NE2 REMARK 620 2 HEM C 201 NA 92.9 REMARK 620 3 HEM C 201 NB 86.0 90.3 REMARK 620 4 HEM C 201 NC 98.1 168.2 86.2 REMARK 620 5 HEM C 201 ND 105.2 86.8 168.5 94.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 102 NE2 REMARK 620 2 HEM D 201 NA 100.9 REMARK 620 3 HEM D 201 NB 88.0 87.6 REMARK 620 4 HEM D 201 NC 93.6 164.0 86.0 REMARK 620 5 HEM D 201 ND 106.0 89.8 166.1 92.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM E 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 102 NE2 REMARK 620 2 HEM E 201 NA 102.4 REMARK 620 3 HEM E 201 NB 91.6 90.1 REMARK 620 4 HEM E 201 NC 91.3 165.2 83.7 REMARK 620 5 HEM E 201 ND 100.2 87.8 168.3 95.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM F 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 102 NE2 REMARK 620 2 HEM F 201 NA 101.8 REMARK 620 3 HEM F 201 NB 96.4 91.7 REMARK 620 4 HEM F 201 NC 100.1 157.7 81.5 REMARK 620 5 HEM F 201 ND 103.7 84.4 159.9 94.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM E 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM F 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JRV RELATED DB: PDB REMARK 900 RELATED ID: 5JRX RELATED DB: PDB DBREF 5JRU A 1 188 UNP Q8RBX6 Q8RBX6_CALS4 1 188 DBREF 5JRU B 1 188 UNP Q8RBX6 Q8RBX6_CALS4 1 188 DBREF 5JRU C 1 188 UNP Q8RBX6 Q8RBX6_CALS4 1 188 DBREF 5JRU D 1 188 UNP Q8RBX6 Q8RBX6_CALS4 1 188 DBREF 5JRU E 1 188 UNP Q8RBX6 Q8RBX6_CALS4 1 188 DBREF 5JRU F 1 188 UNP Q8RBX6 Q8RBX6_CALS4 1 188 SEQRES 1 A 188 MET LYS GLY THR ILE VAL GLY THR TRP ILE LYS THR LEU SEQRES 2 A 188 ARG ASP LEU TYR GLY ASN ASP VAL VAL ASP GLU SER LEU SEQRES 3 A 188 LYS SER VAL GLY TRP GLU PRO ASP ARG VAL ILE THR PRO SEQRES 4 A 188 LEU GLU ASP ILE ASP ASP ASP GLU VAL ARG ARG ILE PHE SEQRES 5 A 188 ALA LYS VAL SER GLU LYS THR GLY LYS ASN VAL ASN GLU SEQRES 6 A 188 ILE TRP ARG GLU VAL GLY ARG GLN ASN ILE LYS THR PHE SEQRES 7 A 188 SER GLU TRP PHE PRO SER TYR PHE ALA GLY ARG ARG LEU SEQRES 8 A 188 VAL ASN PHE LEU MET MET MET ASP GLU VAL HIS LEU GLN SEQRES 9 A 188 LEU THR LYS MET ILE LYS GLY ALA THR PRO PRO ARG LEU SEQRES 10 A 188 ILE ALA LYS PRO VAL ALA LYS ASP ALA ILE GLU MET GLU SEQRES 11 A 188 TYR VAL SER LYS ARG LYS MET TYR ASP TYR PHE LEU GLY SEQRES 12 A 188 LEU ILE GLU GLY SER SER LYS PHE PHE LYS GLU GLU ILE SEQRES 13 A 188 SER VAL GLU GLU VAL GLU ARG GLY GLU LYS ASP GLY PHE SEQRES 14 A 188 SER ARG LEU LYS VAL ARG ILE LYS PHE LYS ASN PRO VAL SEQRES 15 A 188 PHE GLU TYR LYS LYS ASN SEQRES 1 B 188 MET LYS GLY THR ILE VAL GLY THR TRP ILE LYS THR LEU SEQRES 2 B 188 ARG ASP LEU TYR GLY ASN ASP VAL VAL ASP GLU SER LEU SEQRES 3 B 188 LYS SER VAL GLY TRP GLU PRO ASP ARG VAL ILE THR PRO SEQRES 4 B 188 LEU GLU ASP ILE ASP ASP ASP GLU VAL ARG ARG ILE PHE SEQRES 5 B 188 ALA LYS VAL SER GLU LYS THR GLY LYS ASN VAL ASN GLU SEQRES 6 B 188 ILE TRP ARG GLU VAL GLY ARG GLN ASN ILE LYS THR PHE SEQRES 7 B 188 SER GLU TRP PHE PRO SER TYR PHE ALA GLY ARG ARG LEU SEQRES 8 B 188 VAL ASN PHE LEU MET MET MET ASP GLU VAL HIS LEU GLN SEQRES 9 B 188 LEU THR LYS MET ILE LYS GLY ALA THR PRO PRO ARG LEU SEQRES 10 B 188 ILE ALA LYS PRO VAL ALA LYS ASP ALA ILE GLU MET GLU SEQRES 11 B 188 TYR VAL SER LYS ARG LYS MET TYR ASP TYR PHE LEU GLY SEQRES 12 B 188 LEU ILE GLU GLY SER SER LYS PHE PHE LYS GLU GLU ILE SEQRES 13 B 188 SER VAL GLU GLU VAL GLU ARG GLY GLU LYS ASP GLY PHE SEQRES 14 B 188 SER ARG LEU LYS VAL ARG ILE LYS PHE LYS ASN PRO VAL SEQRES 15 B 188 PHE GLU TYR LYS LYS ASN SEQRES 1 C 188 MET LYS GLY THR ILE VAL GLY THR TRP ILE LYS THR LEU SEQRES 2 C 188 ARG ASP LEU TYR GLY ASN ASP VAL VAL ASP GLU SER LEU SEQRES 3 C 188 LYS SER VAL GLY TRP GLU PRO ASP ARG VAL ILE THR PRO SEQRES 4 C 188 LEU GLU ASP ILE ASP ASP ASP GLU VAL ARG ARG ILE PHE SEQRES 5 C 188 ALA LYS VAL SER GLU LYS THR GLY LYS ASN VAL ASN GLU SEQRES 6 C 188 ILE TRP ARG GLU VAL GLY ARG GLN ASN ILE LYS THR PHE SEQRES 7 C 188 SER GLU TRP PHE PRO SER TYR PHE ALA GLY ARG ARG LEU SEQRES 8 C 188 VAL ASN PHE LEU MET MET MET ASP GLU VAL HIS LEU GLN SEQRES 9 C 188 LEU THR LYS MET ILE LYS GLY ALA THR PRO PRO ARG LEU SEQRES 10 C 188 ILE ALA LYS PRO VAL ALA LYS ASP ALA ILE GLU MET GLU SEQRES 11 C 188 TYR VAL SER LYS ARG LYS MET TYR ASP TYR PHE LEU GLY SEQRES 12 C 188 LEU ILE GLU GLY SER SER LYS PHE PHE LYS GLU GLU ILE SEQRES 13 C 188 SER VAL GLU GLU VAL GLU ARG GLY GLU LYS ASP GLY PHE SEQRES 14 C 188 SER ARG LEU LYS VAL ARG ILE LYS PHE LYS ASN PRO VAL SEQRES 15 C 188 PHE GLU TYR LYS LYS ASN SEQRES 1 D 188 MET LYS GLY THR ILE VAL GLY THR TRP ILE LYS THR LEU SEQRES 2 D 188 ARG ASP LEU TYR GLY ASN ASP VAL VAL ASP GLU SER LEU SEQRES 3 D 188 LYS SER VAL GLY TRP GLU PRO ASP ARG VAL ILE THR PRO SEQRES 4 D 188 LEU GLU ASP ILE ASP ASP ASP GLU VAL ARG ARG ILE PHE SEQRES 5 D 188 ALA LYS VAL SER GLU LYS THR GLY LYS ASN VAL ASN GLU SEQRES 6 D 188 ILE TRP ARG GLU VAL GLY ARG GLN ASN ILE LYS THR PHE SEQRES 7 D 188 SER GLU TRP PHE PRO SER TYR PHE ALA GLY ARG ARG LEU SEQRES 8 D 188 VAL ASN PHE LEU MET MET MET ASP GLU VAL HIS LEU GLN SEQRES 9 D 188 LEU THR LYS MET ILE LYS GLY ALA THR PRO PRO ARG LEU SEQRES 10 D 188 ILE ALA LYS PRO VAL ALA LYS ASP ALA ILE GLU MET GLU SEQRES 11 D 188 TYR VAL SER LYS ARG LYS MET TYR ASP TYR PHE LEU GLY SEQRES 12 D 188 LEU ILE GLU GLY SER SER LYS PHE PHE LYS GLU GLU ILE SEQRES 13 D 188 SER VAL GLU GLU VAL GLU ARG GLY GLU LYS ASP GLY PHE SEQRES 14 D 188 SER ARG LEU LYS VAL ARG ILE LYS PHE LYS ASN PRO VAL SEQRES 15 D 188 PHE GLU TYR LYS LYS ASN SEQRES 1 E 188 MET LYS GLY THR ILE VAL GLY THR TRP ILE LYS THR LEU SEQRES 2 E 188 ARG ASP LEU TYR GLY ASN ASP VAL VAL ASP GLU SER LEU SEQRES 3 E 188 LYS SER VAL GLY TRP GLU PRO ASP ARG VAL ILE THR PRO SEQRES 4 E 188 LEU GLU ASP ILE ASP ASP ASP GLU VAL ARG ARG ILE PHE SEQRES 5 E 188 ALA LYS VAL SER GLU LYS THR GLY LYS ASN VAL ASN GLU SEQRES 6 E 188 ILE TRP ARG GLU VAL GLY ARG GLN ASN ILE LYS THR PHE SEQRES 7 E 188 SER GLU TRP PHE PRO SER TYR PHE ALA GLY ARG ARG LEU SEQRES 8 E 188 VAL ASN PHE LEU MET MET MET ASP GLU VAL HIS LEU GLN SEQRES 9 E 188 LEU THR LYS MET ILE LYS GLY ALA THR PRO PRO ARG LEU SEQRES 10 E 188 ILE ALA LYS PRO VAL ALA LYS ASP ALA ILE GLU MET GLU SEQRES 11 E 188 TYR VAL SER LYS ARG LYS MET TYR ASP TYR PHE LEU GLY SEQRES 12 E 188 LEU ILE GLU GLY SER SER LYS PHE PHE LYS GLU GLU ILE SEQRES 13 E 188 SER VAL GLU GLU VAL GLU ARG GLY GLU LYS ASP GLY PHE SEQRES 14 E 188 SER ARG LEU LYS VAL ARG ILE LYS PHE LYS ASN PRO VAL SEQRES 15 E 188 PHE GLU TYR LYS LYS ASN SEQRES 1 F 188 MET LYS GLY THR ILE VAL GLY THR TRP ILE LYS THR LEU SEQRES 2 F 188 ARG ASP LEU TYR GLY ASN ASP VAL VAL ASP GLU SER LEU SEQRES 3 F 188 LYS SER VAL GLY TRP GLU PRO ASP ARG VAL ILE THR PRO SEQRES 4 F 188 LEU GLU ASP ILE ASP ASP ASP GLU VAL ARG ARG ILE PHE SEQRES 5 F 188 ALA LYS VAL SER GLU LYS THR GLY LYS ASN VAL ASN GLU SEQRES 6 F 188 ILE TRP ARG GLU VAL GLY ARG GLN ASN ILE LYS THR PHE SEQRES 7 F 188 SER GLU TRP PHE PRO SER TYR PHE ALA GLY ARG ARG LEU SEQRES 8 F 188 VAL ASN PHE LEU MET MET MET ASP GLU VAL HIS LEU GLN SEQRES 9 F 188 LEU THR LYS MET ILE LYS GLY ALA THR PRO PRO ARG LEU SEQRES 10 F 188 ILE ALA LYS PRO VAL ALA LYS ASP ALA ILE GLU MET GLU SEQRES 11 F 188 TYR VAL SER LYS ARG LYS MET TYR ASP TYR PHE LEU GLY SEQRES 12 F 188 LEU ILE GLU GLY SER SER LYS PHE PHE LYS GLU GLU ILE SEQRES 13 F 188 SER VAL GLU GLU VAL GLU ARG GLY GLU LYS ASP GLY PHE SEQRES 14 F 188 SER ARG LEU LYS VAL ARG ILE LYS PHE LYS ASN PRO VAL SEQRES 15 F 188 PHE GLU TYR LYS LYS ASN HET HEM A 201 43 HET HEM B 201 43 HET HEM C 201 43 HET HEM D 201 43 HET HEM E 201 43 HET HEM F 201 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 7 HEM 6(C34 H32 FE N4 O4) FORMUL 13 HOH *435(H2 O) HELIX 1 AA1 LYS A 2 GLY A 18 1 17 HELIX 2 AA2 GLY A 18 VAL A 29 1 12 HELIX 3 AA3 ASP A 44 GLY A 60 1 17 HELIX 4 AA4 ASN A 62 PHE A 82 1 21 HELIX 5 AA5 PRO A 83 PHE A 86 5 4 HELIX 6 AA6 ARG A 90 ILE A 109 1 20 HELIX 7 AA7 MET A 137 LYS A 153 1 17 HELIX 8 AA8 LYS B 2 GLY B 18 1 17 HELIX 9 AA9 GLY B 18 VAL B 29 1 12 HELIX 10 AB1 ASP B 44 GLY B 60 1 17 HELIX 11 AB2 ASN B 62 PHE B 82 1 21 HELIX 12 AB3 PRO B 83 PHE B 86 5 4 HELIX 13 AB4 ARG B 90 ILE B 109 1 20 HELIX 14 AB5 MET B 137 LYS B 153 1 17 HELIX 15 AB6 LYS C 2 GLY C 18 1 17 HELIX 16 AB7 GLY C 18 VAL C 29 1 12 HELIX 17 AB8 ASP C 44 GLY C 60 1 17 HELIX 18 AB9 ASN C 62 PHE C 82 1 21 HELIX 19 AC1 PRO C 83 PHE C 86 5 4 HELIX 20 AC2 ARG C 90 ILE C 109 1 20 HELIX 21 AC3 MET C 137 LYS C 153 1 17 HELIX 22 AC4 LYS D 2 GLY D 18 1 17 HELIX 23 AC5 GLY D 18 VAL D 29 1 12 HELIX 24 AC6 ASP D 44 GLY D 60 1 17 HELIX 25 AC7 ASN D 62 PHE D 82 1 21 HELIX 26 AC8 PRO D 83 PHE D 86 5 4 HELIX 27 AC9 ARG D 90 ILE D 109 1 20 HELIX 28 AD1 MET D 137 LYS D 153 1 17 HELIX 29 AD2 LYS E 2 GLY E 18 1 17 HELIX 30 AD3 GLY E 18 VAL E 29 1 12 HELIX 31 AD4 ASP E 44 GLY E 60 1 17 HELIX 32 AD5 ASN E 62 PHE E 82 1 21 HELIX 33 AD6 PRO E 83 PHE E 86 5 4 HELIX 34 AD7 ARG E 90 ILE E 109 1 20 HELIX 35 AD8 MET E 137 LYS E 153 1 17 HELIX 36 AD9 LYS F 2 GLY F 18 1 17 HELIX 37 AE1 GLY F 18 SER F 28 1 11 HELIX 38 AE2 ASP F 44 GLY F 60 1 17 HELIX 39 AE3 ASN F 62 PHE F 82 1 21 HELIX 40 AE4 PRO F 83 PHE F 86 5 4 HELIX 41 AE5 ARG F 90 ILE F 109 1 20 HELIX 42 AE6 MET F 137 LYS F 153 1 17 SHEET 1 AA1 4 ARG A 116 ALA A 123 0 SHEET 2 AA1 4 ALA A 126 SER A 133 -1 O GLU A 128 N LYS A 120 SHEET 3 AA1 4 PHE A 169 PHE A 178 -1 O LEU A 172 N TYR A 131 SHEET 4 AA1 4 ILE A 156 LYS A 166 -1 N GLU A 162 O LYS A 173 SHEET 1 AA2 4 ARG B 116 ALA B 123 0 SHEET 2 AA2 4 ALA B 126 SER B 133 -1 O GLU B 128 N LYS B 120 SHEET 3 AA2 4 SER B 170 PHE B 178 -1 O SER B 170 N SER B 133 SHEET 4 AA2 4 ILE B 156 GLY B 164 -1 N GLU B 159 O ARG B 175 SHEET 1 AA3 4 ARG C 116 ALA C 123 0 SHEET 2 AA3 4 ALA C 126 SER C 133 -1 O GLU C 128 N LYS C 120 SHEET 3 AA3 4 SER C 170 PHE C 178 -1 O LEU C 172 N TYR C 131 SHEET 4 AA3 4 ILE C 156 GLU C 165 -1 N GLY C 164 O ARG C 171 SHEET 1 AA4 4 ARG D 116 ALA D 123 0 SHEET 2 AA4 4 ALA D 126 SER D 133 -1 O GLU D 130 N ILE D 118 SHEET 3 AA4 4 PHE D 169 PHE D 178 -1 O LEU D 172 N TYR D 131 SHEET 4 AA4 4 ILE D 156 LYS D 166 -1 N SER D 157 O LYS D 177 SHEET 1 AA5 4 ARG E 116 ALA E 123 0 SHEET 2 AA5 4 ALA E 126 SER E 133 -1 O GLU E 130 N ILE E 118 SHEET 3 AA5 4 PHE E 169 LYS E 177 -1 O SER E 170 N SER E 133 SHEET 4 AA5 4 SER E 157 LYS E 166 -1 N GLY E 164 O ARG E 171 SHEET 1 AA6 4 ARG F 116 ALA F 123 0 SHEET 2 AA6 4 ALA F 126 SER F 133 -1 O GLU F 130 N ILE F 118 SHEET 3 AA6 4 PHE F 169 PHE F 178 -1 O SER F 170 N SER F 133 SHEET 4 AA6 4 ILE F 156 LYS F 166 -1 N GLU F 159 O ARG F 175 LINK NE2 HIS A 102 FE HEM A 201 1555 1555 2.01 LINK NE2 HIS B 102 FE HEM B 201 1555 1555 2.01 LINK NE2 HIS C 102 FE HEM C 201 1555 1555 2.01 LINK NE2 HIS D 102 FE HEM D 201 1555 1555 2.02 LINK NE2 HIS E 102 FE HEM E 201 1555 1555 2.01 LINK NE2 HIS F 102 FE HEM F 201 1555 1555 2.01 SITE 1 AC1 18 MET A 1 LYS A 2 ILE A 5 PHE A 78 SITE 2 AC1 18 PHE A 86 PHE A 94 MET A 98 HIS A 102 SITE 3 AC1 18 LEU A 105 THR A 113 PRO A 115 TYR A 131 SITE 4 AC1 18 SER A 133 ARG A 135 MET A 137 PHE A 141 SITE 5 AC1 18 LEU A 144 HOH A 320 SITE 1 AC2 19 MET B 1 LYS B 2 ILE B 5 PHE B 78 SITE 2 AC2 19 PHE B 86 MET B 98 HIS B 102 LEU B 105 SITE 3 AC2 19 ALA B 112 THR B 113 PRO B 115 TYR B 131 SITE 4 AC2 19 SER B 133 ARG B 135 MET B 137 TYR B 140 SITE 5 AC2 19 PHE B 141 LEU B 144 HOH B 343 SITE 1 AC3 20 MET C 1 LYS C 2 ILE C 5 PHE C 78 SITE 2 AC3 20 PHE C 86 MET C 98 HIS C 102 LEU C 105 SITE 3 AC3 20 ALA C 112 THR C 113 PRO C 115 LEU C 117 SITE 4 AC3 20 TYR C 131 SER C 133 ARG C 135 MET C 137 SITE 5 AC3 20 PHE C 141 LEU C 144 HOH C 324 HOH C 344 SITE 1 AC4 17 MET D 1 LYS D 2 PHE D 78 PHE D 86 SITE 2 AC4 17 PHE D 94 MET D 98 HIS D 102 LEU D 105 SITE 3 AC4 17 THR D 113 PRO D 115 TYR D 131 SER D 133 SITE 4 AC4 17 ARG D 135 MET D 137 LEU D 144 ILE D 145 SITE 5 AC4 17 HOH D 315 SITE 1 AC5 19 MET E 1 LYS E 2 PHE E 78 PHE E 86 SITE 2 AC5 19 MET E 98 HIS E 102 LEU E 105 ALA E 112 SITE 3 AC5 19 THR E 113 PRO E 114 PRO E 115 TYR E 131 SITE 4 AC5 19 SER E 133 ARG E 135 MET E 137 TYR E 140 SITE 5 AC5 19 LEU E 144 ILE E 145 HOH E 341 SITE 1 AC6 21 MET F 1 LYS F 2 PHE F 78 PHE F 86 SITE 2 AC6 21 PHE F 94 MET F 98 HIS F 102 LEU F 105 SITE 3 AC6 21 ALA F 112 THR F 113 PRO F 114 PRO F 115 SITE 4 AC6 21 LEU F 117 TYR F 131 SER F 133 ARG F 135 SITE 5 AC6 21 TYR F 140 PHE F 141 LEU F 144 HOH F 312 SITE 6 AC6 21 HOH F 325 CRYST1 86.264 70.446 108.419 90.00 104.93 90.00 P 1 21 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011592 0.000000 0.003092 0.00000 SCALE2 0.000000 0.014195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009546 0.00000