HEADER OXIDOREDUCTASE 06-MAY-16 5JRY TITLE CRYSTAL STRUCTURE OF A NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FROM TITLE 2 BURKHOLDERIA MULTIVORANS IN COVALENT COMPLEX WITH NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT ALDEHYDE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.2.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA MULTIVORANS (STRAIN ATCC 17616 / SOURCE 3 249); SOURCE 4 ORGANISM_TAXID: 395019; SOURCE 5 STRAIN: ATCC 17616 / 249; SOURCE 6 ATCC: 17616; SOURCE 7 GENE: BMULJ_03565; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS SSGCID, BURKHOLDERIA, NAD-DEPENDENT ALDEHYDE DEHYDROGENASE, NAD, KEYWDS 2 STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 27-SEP-23 5JRY 1 REMARK REVDAT 2 22-NOV-17 5JRY 1 REMARK REVDAT 1 08-JUN-16 5JRY 0 JRNL AUTH J.ABENDROTH,D.M.DRANOW,D.D.LORIMER,T.E.EDEWARDS JRNL TITL CRYSTAL STRUCTURE OF A NAD-DEPENDENT ALDEHYDE DEHYDROGENASE JRNL TITL 2 FROM BURKHOLDERIA MULTIVORANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 147020 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.113 REMARK 3 R VALUE (WORKING SET) : 0.113 REMARK 3 FREE R VALUE : 0.130 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.340 REMARK 3 FREE R VALUE TEST SET COUNT : 1964 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.8152 - 2.8919 1.00 10755 161 0.1290 0.1262 REMARK 3 2 2.8919 - 2.2955 1.00 10482 109 0.1116 0.1171 REMARK 3 3 2.2955 - 2.0053 1.00 10458 128 0.1024 0.1289 REMARK 3 4 2.0053 - 1.8219 1.00 10369 126 0.1021 0.1249 REMARK 3 5 1.8219 - 1.6914 1.00 10450 82 0.0985 0.1293 REMARK 3 6 1.6914 - 1.5916 1.00 10261 174 0.0947 0.1159 REMARK 3 7 1.5916 - 1.5119 1.00 10308 159 0.0925 0.1207 REMARK 3 8 1.5119 - 1.4461 1.00 10344 132 0.0960 0.1376 REMARK 3 9 1.4461 - 1.3904 1.00 10218 176 0.1037 0.1199 REMARK 3 10 1.3904 - 1.3424 1.00 10370 115 0.1166 0.1440 REMARK 3 11 1.3424 - 1.3005 1.00 10292 124 0.1221 0.1375 REMARK 3 12 1.3005 - 1.2633 1.00 10274 168 0.1286 0.1657 REMARK 3 13 1.2633 - 1.2300 1.00 10249 153 0.1371 0.1606 REMARK 3 14 1.2300 - 1.2000 1.00 10226 157 0.1537 0.1678 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 10.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.27 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3907 REMARK 3 ANGLE : 1.064 5348 REMARK 3 CHIRALITY : 0.082 605 REMARK 3 PLANARITY : 0.008 724 REMARK 3 DIHEDRAL : 17.035 1502 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JRY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221132. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 147035 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3PQA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOLECULAR DIMENSIONS MORPHEUS SCREEN REMARK 280 G7: 10% PEG 4000, 20% GLYCEROL, 20MM OF EACH: NA-FORMATE, REMARK 280 AMMONIUM-ACETATE, TRISODIUM CITRATE, NA/K TARTRATE, NA OXAMATE; REMARK 280 100MM MOPS/NAHEPES PH 7.5; BUMUA.00020.X.B1.PS37849 AT 20MG/ML + REMARK 280 2MM NADP; CRYO: DIRECT, PUCK PFB1-6, TRAY 271259 G7, PH 5.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.54000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 43.51500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 62.29500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.54000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 43.51500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 62.29500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.54000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 43.51500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 62.29500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.54000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 43.51500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.29500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 27450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 87.08000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 87.03000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 87.08000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 249.18000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 87.03000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 249.18000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 630 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 847 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1021 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1234 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 4 CG CD OE1 OE2 REMARK 470 LYS A 41 CG CD CE NZ REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 ASP A 197 CG OD1 OD2 REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 LYS A 355 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 77 O HOH A 601 1.54 REMARK 500 O HOH A 655 O HOH A 702 1.90 REMARK 500 O HOH A 696 O HOH A 1091 1.91 REMARK 500 O HOH A 1058 O HOH A 1070 1.95 REMARK 500 SG CYS A 285 C4N NDP A 500 2.05 REMARK 500 NH1 ARG A 77 O HOH A 601 2.08 REMARK 500 O HOH A 615 O HOH A 1034 2.10 REMARK 500 O HOH A 1072 O HOH A 1141 2.11 REMARK 500 OE1 GLU A 127 O HOH A 602 2.12 REMARK 500 O HOH A 859 O HOH A 1145 2.12 REMARK 500 O HOH A 1074 O HOH A 1173 2.13 REMARK 500 O HOH A 951 O HOH A 1146 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 964 O HOH A 1068 3657 1.95 REMARK 500 O HOH A 923 O HOH A 1195 3657 2.09 REMARK 500 O HOH A 937 O HOH A 971 4567 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 12 -6.75 81.21 REMARK 500 LEU A 250 -151.87 -117.14 REMARK 500 LEU A 407 -75.91 -91.06 REMARK 500 LYS A 450 -137.84 53.27 REMARK 500 GLU A 457 -169.82 -106.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1255 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A1256 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH A1257 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A1258 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A1259 DISTANCE = 6.33 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NDP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUMUA.00020.X RELATED DB: TARGETTRACK DBREF1 5JRY A 1 477 UNP A0A0H3KPC8_BURM1 DBREF2 5JRY A A0A0H3KPC8 1 477 SEQADV 5JRY MET A -7 UNP A0A0H3KPC INITIATING METHIONINE SEQADV 5JRY ALA A -6 UNP A0A0H3KPC EXPRESSION TAG SEQADV 5JRY HIS A -5 UNP A0A0H3KPC EXPRESSION TAG SEQADV 5JRY HIS A -4 UNP A0A0H3KPC EXPRESSION TAG SEQADV 5JRY HIS A -3 UNP A0A0H3KPC EXPRESSION TAG SEQADV 5JRY HIS A -2 UNP A0A0H3KPC EXPRESSION TAG SEQADV 5JRY HIS A -1 UNP A0A0H3KPC EXPRESSION TAG SEQADV 5JRY HIS A 0 UNP A0A0H3KPC EXPRESSION TAG SEQRES 1 A 485 MET ALA HIS HIS HIS HIS HIS HIS MET LEU LYS GLU THR SEQRES 2 A 485 TYR PRO TYR TYR LEU ALA ASN ALA ALA VAL TYR ALA ASN SEQRES 3 A 485 THR ASP LEU GLU VAL THR ASP LYS TYR SER GLY LYS VAL SEQRES 4 A 485 ALA THR ARG VAL ALA LEU ALA ASP ALA LYS ALA ILE ASP SEQRES 5 A 485 ALA ALA ILE GLY ALA ALA VAL ASP ALA THR LYS PRO MET SEQRES 6 A 485 ARG GLU LEU PRO ALA TYR LYS ARG GLN ALA VAL LEU ASP SEQRES 7 A 485 HIS CYS VAL ALA ARG PHE ARG GLU ARG PHE ASP GLU LEU SEQRES 8 A 485 ALA GLU ALA LEU CYS ILE GLU ALA GLY LYS PRO ILE ASN SEQRES 9 A 485 ASP ALA LYS GLY GLU VAL THR ARG LEU ILE ASP THR PHE SEQRES 10 A 485 ARG VAL ALA SER GLU GLU ALA VAL ARG ILE ASP GLY GLU SEQRES 11 A 485 VAL LEU ASN LEU GLU ILE SER ALA ARG ALA GLN GLY TYR SEQRES 12 A 485 THR GLY TYR THR ARG ARG VAL PRO ILE GLY PRO CYS SER SEQRES 13 A 485 PHE ILE SER PRO PHE ASN PHE PRO LEU ASN LEU ALA ALA SEQRES 14 A 485 HIS LYS VAL ALA PRO ALA LEU ALA ALA GLY CYS PRO PHE SEQRES 15 A 485 VAL LEU LYS PRO ALA SER ARG THR PRO VAL GLY ALA LEU SEQRES 16 A 485 ILE ILE GLY GLU VAL LEU ALA GLU THR ASP LEU PRO LYS SEQRES 17 A 485 GLY ALA PHE SER VAL LEU PRO ALA HIS ARG ASP GLY ALA SEQRES 18 A 485 ASP LEU PHE THR THR ASP ASP ARG PHE ARG LEU LEU SER SEQRES 19 A 485 PHE THR GLY SER PRO ALA VAL GLY TRP ALA LEU LYS GLU SEQRES 20 A 485 LYS ALA GLY LYS LYS LYS VAL VAL LEU GLU LEU GLY GLY SEQRES 21 A 485 ASN ALA ALA ALA ILE VAL ASP ALA ASP GLN LEU ASP ARG SEQRES 22 A 485 LEU ASP TYR VAL VAL ASP ARG LEU ALA PHE GLY ALA PHE SEQRES 23 A 485 TYR GLN SER GLY GLN SER CYS ILE GLY VAL GLN ARG ILE SEQRES 24 A 485 LEU ALA HIS ALA ASP ILE TYR ASP ALA LEU ARG ASP LYS SEQRES 25 A 485 LEU ILE ALA LYS THR ARG SER LEU LYS MET GLY ASP PRO SEQRES 26 A 485 LYS ASP PRO SER THR PHE VAL GLY PRO MET ILE SER GLU SEQRES 27 A 485 SER GLU SER ARG ARG LEU SER GLY TRP MET ASP ALA ALA SEQRES 28 A 485 VAL ALA ALA GLY ALA LYS ILE VAL ALA GLY GLY LYS VAL SEQRES 29 A 485 ASP GLY ALA MET PHE GLU ALA THR LEU LEU GLU ASN VAL SEQRES 30 A 485 GLY ARG ASP GLN ASP LEU TYR ARG LYS GLU ALA PHE GLY SEQRES 31 A 485 PRO ILE ALA ILE LEU GLU LYS PHE ASP ARG PHE ASP ASP SEQRES 32 A 485 ALA LEU ALA ARG VAL ASN ASP SER ASP PHE GLY LEU GLN SEQRES 33 A 485 ALA GLY VAL PHE THR ASP SER LEU ALA HIS THR GLN GLN SEQRES 34 A 485 ALA TRP ASP GLU LEU GLU VAL GLY GLY VAL VAL ILE ASN SEQRES 35 A 485 ASP VAL PRO SER PHE ARG VAL ASP ASN MET PRO TYR GLY SEQRES 36 A 485 GLY VAL LYS ASP SER GLY LEU GLY ARG GLU GLY ILE ARG SEQRES 37 A 485 TYR ALA ILE GLU ASP MET THR GLU PRO ARG LEU LEU VAL SEQRES 38 A 485 VAL ARG ARG ARG HET NDP A 500 77 HET GOL A 501 14 HET GOL A 502 14 HET ACT A 503 7 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NDP C21 H30 N7 O17 P3 FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *659(H2 O) HELIX 1 AA1 ASP A 39 ALA A 53 1 15 HELIX 2 AA2 ALA A 53 LEU A 60 1 8 HELIX 3 AA3 PRO A 61 ARG A 79 1 19 HELIX 4 AA4 ARG A 79 GLY A 92 1 14 HELIX 5 AA5 PRO A 94 VAL A 117 1 24 HELIX 6 AA6 SER A 129 GLN A 133 5 5 HELIX 7 AA7 LEU A 157 GLY A 171 1 15 HELIX 8 AA8 PRO A 183 GLU A 195 1 13 HELIX 9 AA9 HIS A 209 ALA A 213 5 5 HELIX 10 AB1 ASP A 214 ASP A 219 1 6 HELIX 11 AB2 SER A 230 ALA A 241 1 12 HELIX 12 AB3 GLN A 262 ASP A 264 5 3 HELIX 13 AB4 ARG A 265 TYR A 279 1 15 HELIX 14 AB5 GLN A 280 GLN A 283 5 4 HELIX 15 AB6 ILE A 297 LEU A 312 1 16 HELIX 16 AB7 SER A 329 ALA A 346 1 18 HELIX 17 AB8 GLN A 373 LYS A 378 1 6 HELIX 18 AB9 ARG A 392 ASP A 402 1 11 HELIX 19 AC1 SER A 415 LEU A 426 1 12 HELIX 20 AC2 VAL A 449 ASP A 451 5 3 HELIX 21 AC3 GLY A 458 MET A 466 1 9 SHEET 1 AA1 3 THR A 5 TYR A 6 0 SHEET 2 AA1 3 VAL A 31 VAL A 35 1 O ARG A 34 N TYR A 6 SHEET 3 AA1 3 LEU A 21 THR A 24 -1 N VAL A 23 O ALA A 32 SHEET 1 AA2 2 TYR A 8 LEU A 10 0 SHEET 2 AA2 2 ALA A 13 VAL A 15 -1 O VAL A 15 N TYR A 8 SHEET 1 AA3 3 VAL A 123 ASN A 125 0 SHEET 2 AA3 3 TYR A 135 PRO A 143 -1 O GLY A 137 N LEU A 124 SHEET 3 AA3 3 THR A 467 ARG A 475 -1 O GLU A 468 N VAL A 142 SHEET 1 AA4 6 PHE A 203 VAL A 205 0 SHEET 2 AA4 6 PHE A 174 LYS A 177 1 N LEU A 176 O SER A 204 SHEET 3 AA4 6 CYS A 147 ILE A 150 1 N PHE A 149 O LYS A 177 SHEET 4 AA4 6 LEU A 224 THR A 228 1 O LEU A 224 N SER A 148 SHEET 5 AA4 6 LYS A 245 GLU A 249 1 O GLU A 249 N PHE A 227 SHEET 6 AA4 6 GLY A 453 LEU A 454 -1 O LEU A 454 N LEU A 248 SHEET 1 AA5 7 LYS A 349 ALA A 352 0 SHEET 2 AA5 7 THR A 364 GLU A 367 -1 O GLU A 367 N LYS A 349 SHEET 3 AA5 7 ILE A 384 PHE A 390 1 O LEU A 387 N LEU A 366 SHEET 4 AA5 7 ARG A 290 HIS A 294 1 N ILE A 291 O ILE A 386 SHEET 5 AA5 7 ALA A 255 VAL A 258 1 N VAL A 258 O LEU A 292 SHEET 6 AA5 7 GLN A 408 PHE A 412 1 O PHE A 412 N ILE A 257 SHEET 7 AA5 7 GLY A 430 ILE A 433 1 O VAL A 432 N ALA A 409 SHEET 1 AA6 2 VAL A 356 ASP A 357 0 SHEET 2 AA6 2 MET A 360 PHE A 361 -1 O MET A 360 N ASP A 357 SITE 1 AC1 38 ILE A 150 SER A 151 PRO A 152 PHE A 153 SITE 2 AC1 38 ASN A 154 LEU A 159 LYS A 177 PRO A 178 SITE 3 AC1 38 ALA A 179 SER A 180 ARG A 181 ALA A 208 SITE 4 AC1 38 ARG A 210 ALA A 213 PHE A 227 THR A 228 SITE 5 AC1 38 GLY A 229 SER A 230 PRO A 231 VAL A 233 SITE 6 AC1 38 GLU A 249 LEU A 250 GLY A 251 CYS A 285 SITE 7 AC1 38 GLU A 379 PHE A 381 TYR A 446 HOH A 661 SITE 8 AC1 38 HOH A 672 HOH A 707 HOH A 737 HOH A 770 SITE 9 AC1 38 HOH A 776 HOH A 789 HOH A 848 HOH A 871 SITE 10 AC1 38 HOH A 982 HOH A1014 SITE 1 AC2 8 THR A 136 ARG A 140 ARG A 476 HOH A 713 SITE 2 AC2 8 HOH A 860 HOH A1022 HOH A1043 HOH A1046 SITE 1 AC3 5 LYS A 245 VAL A 246 LEU A 454 HOH A 921 SITE 2 AC3 5 HOH A1021 SITE 1 AC4 7 ARG A 104 PHE A 155 CYS A 285 ARG A 440 SITE 2 AC4 7 TYR A 446 HOH A 657 HOH A 793 CRYST1 87.080 87.030 124.590 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011484 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008026 0.00000