HEADER TRANSFERASE 09-MAY-16 5JSW TITLE TRNA GUANINE TRANSGLYCOSYLASE (TGT) IN CO-CRYSTALLIZED COMPLEX WITH 6- TITLE 2 AMINO-2-((((3A'R,6'R,6A'R)-2,2,2',2'-TETRAMETHYLDIHYDRO-3A'H- TITLE 3 SPIRO[[1,3]DIOXOLANE-4,4'-FURO[3,4-D][1,3]DIOXOL]-6'-YL)METHYL) TITLE 4 AMINO)-1H-IMIDAZO[4,5-G]QUINAZOLIN-8(7H)-ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS ZM4 = ATCC SOURCE 3 31821; SOURCE 4 ORGANISM_TAXID: 264203; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CO-CRYSTALLIZATION, CARBOHYDRATES, TRANSFERASE, TRANSFERASE INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR F.R.EHRMANN,D.NGUYEN,A.HEINE,G.KLEBE REVDAT 3 10-JAN-24 5JSW 1 REMARK REVDAT 2 07-MAR-18 5JSW 1 REMARK REVDAT 1 24-MAY-17 5JSW 0 JRNL AUTH F.R.EHRMANN,E.SCHAEFER,A.HEINE,F.DIEDERICH,G.KLEBE JRNL TITL APPLICATION OF CARBOHYDRATES BASED LIN-BENZOGUANINES IN A JRNL TITL 2 SOLVENT-EXPOSED SUBPOCKET OF THE TRNA-MODIFYING ENZYME TGT JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1-2155_1492 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 114725 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.126 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5736 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.1630 - 3.7900 0.97 3805 200 0.1374 0.1677 REMARK 3 2 3.7900 - 3.0092 0.98 3789 200 0.1257 0.1422 REMARK 3 3 3.0092 - 2.6290 0.98 3750 197 0.1292 0.1360 REMARK 3 4 2.6290 - 2.3888 0.98 3776 199 0.1342 0.1332 REMARK 3 5 2.3888 - 2.2176 0.98 3757 197 0.1221 0.1390 REMARK 3 6 2.2176 - 2.0869 0.98 3733 197 0.1163 0.1239 REMARK 3 7 2.0869 - 1.9824 0.98 3757 198 0.1142 0.1311 REMARK 3 8 1.9824 - 1.8961 0.96 3693 194 0.1161 0.1338 REMARK 3 9 1.8961 - 1.8231 0.97 3682 194 0.1087 0.1330 REMARK 3 10 1.8231 - 1.7602 0.97 3672 193 0.1010 0.1177 REMARK 3 11 1.7602 - 1.7052 0.96 3640 192 0.1025 0.1132 REMARK 3 12 1.7052 - 1.6565 0.96 3679 193 0.1036 0.1370 REMARK 3 13 1.6565 - 1.6129 0.96 3671 194 0.0992 0.1236 REMARK 3 14 1.6129 - 1.5735 0.96 3629 190 0.0966 0.1317 REMARK 3 15 1.5735 - 1.5377 0.95 3588 189 0.1034 0.1312 REMARK 3 16 1.5377 - 1.5050 0.95 3644 192 0.1046 0.1268 REMARK 3 17 1.5050 - 1.4749 0.95 3636 191 0.1068 0.1332 REMARK 3 18 1.4749 - 1.4471 0.95 3610 190 0.1074 0.1472 REMARK 3 19 1.4471 - 1.4212 0.95 3618 191 0.1119 0.1333 REMARK 3 20 1.4212 - 1.3971 0.95 3624 191 0.1128 0.1568 REMARK 3 21 1.3971 - 1.3746 0.95 3636 191 0.1204 0.1348 REMARK 3 22 1.3746 - 1.3535 0.94 3543 186 0.1207 0.1376 REMARK 3 23 1.3535 - 1.3336 0.94 3606 190 0.1306 0.1660 REMARK 3 24 1.3336 - 1.3148 0.93 3515 185 0.1410 0.1747 REMARK 3 25 1.3148 - 1.2970 0.93 3498 184 0.1523 0.1706 REMARK 3 26 1.2970 - 1.2802 0.93 3612 190 0.1691 0.1925 REMARK 3 27 1.2802 - 1.2642 0.93 3471 183 0.1853 0.2119 REMARK 3 28 1.2642 - 1.2489 0.93 3594 189 0.1948 0.2358 REMARK 3 29 1.2489 - 1.2344 0.93 3502 185 0.2251 0.2561 REMARK 3 30 1.2344 - 1.2200 0.85 3259 171 0.2747 0.3160 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3257 REMARK 3 ANGLE : 0.847 4413 REMARK 3 CHIRALITY : 0.072 457 REMARK 3 PLANARITY : 0.005 613 REMARK 3 DIHEDRAL : 22.024 1253 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JSW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221182. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P14 (MX2) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 114740 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.220 REMARK 200 RESOLUTION RANGE LOW (A) : 44.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04100 REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P0D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 8000,100MM MES, 1MM DTT, 10% REMARK 280 DMSO, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.16800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.47800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.16800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.47800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 509 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 869 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 LEU A 128 REMARK 465 ASP A 129 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 LYS A 33 NZ REMARK 470 ARG A 77 NH1 NH2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 125 CD CE NZ REMARK 470 HIS A 127 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 132 NE CZ NH1 NH2 REMARK 470 ARG A 167 CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 191 OE1 OE2 REMARK 470 GLU A 220 CD OE1 OE2 REMARK 470 ARG A 306 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 48 30.84 -96.15 REMARK 500 ALA A 48 30.84 -85.33 REMARK 500 GLN A 203 -164.44 -121.39 REMARK 500 SER A 205 -132.05 57.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 106.5 REMARK 620 3 CYS A 323 SG 114.6 116.1 REMARK 620 4 HIS A 349 ND1 104.9 116.1 98.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6MM A 413 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 414 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P0D RELATED DB: PDB REMARK 900 RELATED ID: 4PUK RELATED DB: PDB REMARK 900 RELATED ID: 4KWO RELATED DB: PDB REMARK 900 RELATED ID: 4LEQ RELATED DB: PDB REMARK 900 RELATED ID: 4LBU RELATED DB: PDB REMARK 900 RELATED ID: 5I07 RELATED DB: PDB REMARK 900 RELATED ID: 5JSV RELATED DB: PDB DBREF 5JSW A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 5JSW LYS A 312 UNP P28720 THR 312 CONFLICT SEQRES 1 A 386 MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG PRO ARG SEQRES 2 A 386 PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS ALA ARG SEQRES 3 A 386 THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE ARG THR SEQRES 4 A 386 PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR VAL LYS SEQRES 5 A 386 ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY ALA ASP SEQRES 6 A 386 ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU ARG PRO SEQRES 7 A 386 GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU HIS SER SEQRES 8 A 386 PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SER GLY SEQRES 9 A 386 GLY TYR GLN VAL MET SER LEU SER SER LEU THR LYS GLN SEQRES 10 A 386 SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU ASP GLY SEQRES 11 A 386 SER ARG HIS MET LEU SER PRO GLU ARG SER ILE GLU ILE SEQRES 12 A 386 GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA PHE ASP SEQRES 13 A 386 GLU CYS THR PRO TYR PRO ALA THR PRO SER ARG ALA ALA SEQRES 14 A 386 SER SER MET GLU ARG SER MET ARG TRP ALA LYS ARG SER SEQRES 15 A 386 ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA GLU ASN SEQRES 16 A 386 ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL PHE GLU SEQRES 17 A 386 ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA GLU ILE SEQRES 18 A 386 GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA VAL GLY SEQRES 19 A 386 GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP PHE SER SEQRES 20 A 386 VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR LEU MET SEQRES 21 A 386 GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA VAL GLU SEQRES 22 A 386 ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO THR ARG SEQRES 23 A 386 SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP GLY PRO SEQRES 24 A 386 ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP LEU LYS SEQRES 25 A 386 PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS GLN LYS SEQRES 26 A 386 TRP SER ARG ALA TYR ILE HIS HIS LEU ILE ARG ALA GLY SEQRES 27 A 386 GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS ASN ILE SEQRES 28 A 386 ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG ASP SER SEQRES 29 A 386 ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN ASP PHE SEQRES 30 A 386 ARG ALA ARG TYR PHE ALA ARG ASN SER HET ZN A 401 1 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET GOL A 409 6 HET GOL A 410 6 HET GOL A 411 6 HET GOL A 412 6 HET 6MM A 413 33 HET CL A 414 1 HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM 6MM 6-AMINO-2-({[(3A'R,4S,6'R,6A'R)-2,2,2',2'- HETNAM 2 6MM TETRAMETHYLDIHYDRO-3A'H-SPIRO[1,3-DIOXOLANE-4,4'- HETNAM 3 6MM FURO[3,4-D][1,3]DIOXOL]-6'-YL]METHYL}AMINO)-1,7- HETNAM 4 6MM DIHYDRO-8H-IMIDAZO[4,5-G]QUINAZOLIN-8-ONE (NON- HETNAM 5 6MM PREFERRED NAME) HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 GOL 7(C3 H8 O3) FORMUL 14 6MM C21 H26 N6 O6 FORMUL 15 CL CL 1- FORMUL 16 HOH *395(H2 O) HELIX 1 AA1 LYS A 55 THR A 62 1 8 HELIX 2 AA2 THR A 71 ARG A 77 1 7 HELIX 3 AA3 GLY A 79 LEU A 86 1 8 HELIX 4 AA4 GLY A 88 GLY A 94 1 7 HELIX 5 AA5 GLY A 104 LEU A 111 1 8 HELIX 6 AA6 SER A 136 GLY A 148 1 13 HELIX 7 AA7 THR A 164 ARG A 189 1 26 HELIX 8 AA8 ARG A 189 ALA A 196 1 8 HELIX 9 AA9 PHE A 207 GLY A 222 1 16 HELIX 10 AB1 GLY A 236 VAL A 248 1 13 HELIX 11 AB2 PRO A 249 LEU A 251 5 3 HELIX 12 AB3 LYS A 264 ARG A 274 1 11 HELIX 13 AB4 VAL A 282 GLY A 291 1 10 HELIX 14 AB5 ASN A 304 SER A 308 5 5 HELIX 15 AB6 CYS A 320 TRP A 326 1 7 HELIX 16 AB7 SER A 327 ALA A 337 1 11 HELIX 17 AB8 GLU A 339 GLU A 367 1 29 HELIX 18 AB9 ARG A 369 PHE A 382 1 14 SHEET 1 AA1 3 SER A 15 GLU A 22 0 SHEET 2 AA1 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 AA1 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 AA2 8 ALA A 41 MET A 43 0 SHEET 2 AA2 8 MET A 278 ASP A 280 1 O PHE A 279 N MET A 43 SHEET 3 AA2 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 AA2 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 AA2 8 ALA A 197 GLN A 202 1 N GLY A 200 O ALA A 227 SHEET 6 AA2 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 AA2 8 ILE A 99 ASP A 102 1 N THR A 101 O ILE A 151 SHEET 8 AA2 8 ILE A 67 ASN A 70 1 N GLY A 69 O LEU A 100 SHEET 1 AA3 3 THR A 115 GLN A 117 0 SHEET 2 AA3 3 VAL A 122 LYS A 125 -1 O THR A 123 N LYS A 116 SHEET 3 AA3 3 ARG A 132 LEU A 135 -1 O HIS A 133 N PHE A 124 SHEET 1 AA4 2 GLN A 292 ALA A 293 0 SHEET 2 AA4 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 320 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 323 ZN ZN A 401 1555 1555 2.33 LINK ND1 HIS A 349 ZN ZN A 401 1555 1555 2.10 CISPEP 1 THR A 39 PRO A 40 0 0.16 CISPEP 2 ARG A 77 PRO A 78 0 6.97 CISPEP 3 TYR A 161 PRO A 162 0 -3.77 CISPEP 4 VAL A 262 GLY A 263 0 -1.05 SITE 1 AC1 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC2 7 SER A 17 ILE A 18 GLU A 119 HOH A 503 SITE 2 AC2 7 HOH A 566 HOH A 580 HOH A 710 SITE 1 AC3 4 ARG A 38 ARG A 60 ALA A 61 GLY A 63 SITE 1 AC4 6 HIS A 145 GLY A 148 SER A 149 GLN A 192 SITE 2 AC4 6 HOH A 603 HOH A 652 SITE 1 AC5 6 ARG A 183 PHE A 223 ASP A 224 HOH A 539 SITE 2 AC5 6 HOH A 607 HOH A 700 SITE 1 AC6 8 PRO A 56 GLU A 57 GLY A 94 TRP A 95 SITE 2 AC6 8 ASP A 96 ARG A 97 LYS A 325 HOH A 591 SITE 1 AC7 6 LEU A 311 CYS A 323 LYS A 325 TRP A 326 SITE 2 AC7 6 SER A 327 HOH A 740 SITE 1 AC8 7 GLU A 317 LYS A 360 PHE A 373 PHE A 377 SITE 2 AC8 7 ARG A 380 HOH A 574 HOH A 715 SITE 1 AC9 10 SER A 15 PHE A 16 GLU A 119 ARG A 174 SITE 2 AC9 10 ARG A 177 ASP A 254 LYS A 255 HOH A 503 SITE 3 AC9 10 HOH A 580 HOH A 769 SITE 1 AD1 6 ASN A 70 TYR A 106 GLN A 107 6MM A 413 SITE 2 AD1 6 HOH A 545 HOH A 568 SITE 1 AD2 7 GLN A 117 ARG A 174 PRO A 252 ASP A 254 SITE 2 AD2 7 LYS A 255 HOH A 520 HOH A 532 SITE 1 AD3 6 ALA A 61 THR A 62 CYS A 320 ALA A 321 SITE 2 AD3 6 GLU A 348 HOH A 525 SITE 1 AD4 16 ASP A 102 SER A 103 TYR A 106 ASP A 156 SITE 2 AD4 16 CYS A 158 ILE A 201 GLN A 203 GLY A 229 SITE 3 AD4 16 GLY A 230 LEU A 231 ALA A 232 MET A 260 SITE 4 AD4 16 GLY A 261 ARG A 286 GOL A 410 HOH A 506 SITE 1 AD5 3 THR A 285 ARG A 289 HOH A 747 CRYST1 90.336 64.956 70.782 90.00 96.38 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011070 0.000000 0.001237 0.00000 SCALE2 0.000000 0.015395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014216 0.00000