HEADER TRANSFERASE 09-MAY-16 5JT6 TITLE TRNA GUANINE TRANSGLYCOSYLASE (TGT) IN CO-CRYSTALLIZED COMPLEX WITH 2- TITLE 2 ((2-MORPHOLINOETHYL)AMINO)-1H-BENZO[D]IMIDAZOLE-5-CARBOHYDRAZIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME,TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS (STRAIN ATCC SOURCE 3 31821 / ZM4 / CP4); SOURCE 4 ORGANISM_TAXID: 264203; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BENZIMIDAZOLE-DERIVATIVES, SHIGELLOSIS, TRANSFERASE, TRANSFERASE KEYWDS 2 INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR F.R.EHRMANN,A.HEINE,G.KLEBE REVDAT 2 10-JAN-24 5JT6 1 REMARK REVDAT 1 24-MAY-17 5JT6 0 JRNL AUTH F.R.EHRMANN,C.HOHN,A.HEINE,F.DIEDERICH,G.KLEBE JRNL TITL BENZIMIDAZOLE-BASED INHIBITORS AS A NOVEL SCAFFOLD TO JRNL TITL 2 INHIBIT Z.MOBILIS TGT AND STUDY PROTEIN FLEXIBILITY AND THE JRNL TITL 3 CONTRIBUTIONS OF ACTIVE SITE RESIDUES TO BINDING AFFINITY OF JRNL TITL 4 LIN-BENZOPURINES. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 59215 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2961 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1100 - 4.2440 0.97 2723 144 0.1584 0.1546 REMARK 3 2 4.2440 - 3.3691 0.99 2728 144 0.1472 0.1762 REMARK 3 3 3.3691 - 2.9433 0.98 2676 140 0.1527 0.1770 REMARK 3 4 2.9433 - 2.6743 0.99 2710 143 0.1608 0.1824 REMARK 3 5 2.6743 - 2.4826 0.99 2711 143 0.1679 0.1944 REMARK 3 6 2.4826 - 2.3363 0.99 2724 143 0.1602 0.1652 REMARK 3 7 2.3363 - 2.2193 0.99 2659 140 0.1594 0.1965 REMARK 3 8 2.2193 - 2.1227 0.99 2709 143 0.1563 0.1773 REMARK 3 9 2.1227 - 2.0410 0.99 2697 142 0.1551 0.1807 REMARK 3 10 2.0410 - 1.9705 0.99 2695 141 0.1507 0.1603 REMARK 3 11 1.9705 - 1.9089 0.99 2691 142 0.1611 0.1798 REMARK 3 12 1.9089 - 1.8544 0.98 2680 141 0.1669 0.1860 REMARK 3 13 1.8544 - 1.8055 0.98 2649 139 0.1745 0.1899 REMARK 3 14 1.8055 - 1.7615 0.98 2694 142 0.1747 0.2043 REMARK 3 15 1.7615 - 1.7214 0.99 2637 139 0.1873 0.2175 REMARK 3 16 1.7214 - 1.6848 0.98 2658 140 0.2005 0.2106 REMARK 3 17 1.6848 - 1.6511 0.98 2657 140 0.2000 0.2305 REMARK 3 18 1.6511 - 1.6199 0.98 2676 140 0.2079 0.2257 REMARK 3 19 1.6199 - 1.5910 0.98 2656 140 0.2315 0.2389 REMARK 3 20 1.5910 - 1.5640 0.98 2659 140 0.2544 0.2601 REMARK 3 21 1.5640 - 1.5400 0.95 2565 135 0.2722 0.3203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2991 REMARK 3 ANGLE : 0.813 4042 REMARK 3 CHIRALITY : 0.050 424 REMARK 3 PLANARITY : 0.005 554 REMARK 3 DIHEDRAL : 16.225 1826 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 11:105) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7165 4.0310 18.2048 REMARK 3 T TENSOR REMARK 3 T11: 0.2272 T22: 0.1658 REMARK 3 T33: 0.1473 T12: 0.0131 REMARK 3 T13: 0.0027 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 2.7508 L22: 0.8122 REMARK 3 L33: 1.0022 L12: -0.5948 REMARK 3 L13: 0.5635 L23: -0.0478 REMARK 3 S TENSOR REMARK 3 S11: -0.0508 S12: -0.2638 S13: 0.1020 REMARK 3 S21: 0.2144 S22: 0.0804 S23: -0.0423 REMARK 3 S31: -0.0060 S32: -0.0518 S33: -0.0218 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 106:135) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6016 25.8187 26.5743 REMARK 3 T TENSOR REMARK 3 T11: 0.6553 T22: 0.3609 REMARK 3 T33: 0.4894 T12: 0.0563 REMARK 3 T13: -0.1050 T23: -0.1128 REMARK 3 L TENSOR REMARK 3 L11: 4.1575 L22: 0.4240 REMARK 3 L33: 7.8928 L12: -0.1553 REMARK 3 L13: 3.2835 L23: -1.5141 REMARK 3 S TENSOR REMARK 3 S11: -0.4804 S12: -0.2028 S13: 0.7194 REMARK 3 S21: 0.2093 S22: 0.3083 S23: -0.1979 REMARK 3 S31: -0.9568 S32: -0.2327 S33: 0.2024 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 136:159) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8919 13.1949 29.4452 REMARK 3 T TENSOR REMARK 3 T11: 0.3973 T22: 0.3635 REMARK 3 T33: 0.2349 T12: 0.0429 REMARK 3 T13: -0.0051 T23: -0.0903 REMARK 3 L TENSOR REMARK 3 L11: 2.2917 L22: 0.1932 REMARK 3 L33: 2.0997 L12: -0.2939 REMARK 3 L13: -0.2771 L23: -0.3374 REMARK 3 S TENSOR REMARK 3 S11: -0.0952 S12: -0.4812 S13: 0.4538 REMARK 3 S21: 0.3711 S22: 0.0861 S23: -0.0760 REMARK 3 S31: -0.3276 S32: 0.0468 S33: 0.0562 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 160:289) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5142 12.8545 24.7406 REMARK 3 T TENSOR REMARK 3 T11: 0.2971 T22: 0.2603 REMARK 3 T33: 0.3008 T12: 0.0088 REMARK 3 T13: -0.0742 T23: -0.1255 REMARK 3 L TENSOR REMARK 3 L11: 1.7168 L22: 1.4255 REMARK 3 L33: 2.2862 L12: -0.5729 REMARK 3 L13: -0.4730 L23: 0.0586 REMARK 3 S TENSOR REMARK 3 S11: -0.0527 S12: -0.4771 S13: 0.4563 REMARK 3 S21: 0.3595 S22: 0.1775 S23: -0.3223 REMARK 3 S31: -0.2143 S32: 0.2045 S33: -0.1191 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 290:382) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8617 6.8675 -2.6112 REMARK 3 T TENSOR REMARK 3 T11: 0.1345 T22: 0.1783 REMARK 3 T33: 0.1776 T12: -0.0087 REMARK 3 T13: 0.0285 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 1.3175 L22: 1.2713 REMARK 3 L33: 2.0021 L12: -0.5556 REMARK 3 L13: 1.2636 L23: -0.8224 REMARK 3 S TENSOR REMARK 3 S11: -0.0191 S12: 0.1912 S13: 0.0802 REMARK 3 S21: -0.0471 S22: -0.0379 S23: -0.2083 REMARK 3 S31: 0.0320 S32: 0.2658 S33: 0.0607 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JT6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221198. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918409 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59224 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 45.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.02800 REMARK 200 FOR THE DATA SET : 18.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1P0D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 8000,100MM MES, 1MM DTT, 10% REMARK 280 DMSO, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.15950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.11750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.15950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.11750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4760 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 701 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 THR A 115 REMARK 465 LEU A 128 REMARK 465 ASP A 129 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 ARG A 11 CD NE CZ NH1 NH2 REMARK 470 LYS A 85 CE NZ REMARK 470 MET A 109 CE REMARK 470 SER A 110 OG REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLN A 117 OE1 NE2 REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 THR A 159 OG1 CG2 REMARK 470 THR A 164 OG1 CG2 REMARK 470 SER A 166 OG REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 SER A 170 OG REMARK 470 SER A 171 OG REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 191 CD OE1 OE2 REMARK 470 VAL A 206 CG1 CG2 REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS A 264 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 14 109.33 -165.01 REMARK 500 ALA A 48 48.17 -98.24 REMARK 500 GLN A 203 -165.98 -120.89 REMARK 500 SER A 205 -135.75 58.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 6N1 A 404 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 106.8 REMARK 620 3 CYS A 323 SG 115.1 115.6 REMARK 620 4 HIS A 349 ND1 105.1 114.4 99.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6N1 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P0D RELATED DB: PDB REMARK 900 RELATED ID: 4PUK RELATED DB: PDB REMARK 900 RELATED ID: 3S1G RELATED DB: PDB REMARK 900 RELATED ID: 5J9M RELATED DB: PDB REMARK 900 RELATED ID: 5J9N RELATED DB: PDB REMARK 900 RELATED ID: 5J9O RELATED DB: PDB REMARK 900 RELATED ID: 5I07 RELATED DB: PDB REMARK 900 RELATED ID: 4KWO RELATED DB: PDB REMARK 900 RELATED ID: 5JT5 RELATED DB: PDB DBREF 5JT6 A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 5JT6 LYS A 312 UNP P28720 THR 312 CONFLICT SEQRES 1 A 386 MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG PRO ARG SEQRES 2 A 386 PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS ALA ARG SEQRES 3 A 386 THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE ARG THR SEQRES 4 A 386 PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR VAL LYS SEQRES 5 A 386 ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY ALA ASP SEQRES 6 A 386 ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU ARG PRO SEQRES 7 A 386 GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU HIS SER SEQRES 8 A 386 PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SER GLY SEQRES 9 A 386 GLY TYR GLN VAL MET SER LEU SER SER LEU THR LYS GLN SEQRES 10 A 386 SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU ASP GLY SEQRES 11 A 386 SER ARG HIS MET LEU SER PRO GLU ARG SER ILE GLU ILE SEQRES 12 A 386 GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA PHE ASP SEQRES 13 A 386 GLU CYS THR PRO TYR PRO ALA THR PRO SER ARG ALA ALA SEQRES 14 A 386 SER SER MET GLU ARG SER MET ARG TRP ALA LYS ARG SER SEQRES 15 A 386 ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA GLU ASN SEQRES 16 A 386 ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL PHE GLU SEQRES 17 A 386 ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA GLU ILE SEQRES 18 A 386 GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA VAL GLY SEQRES 19 A 386 GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP PHE SER SEQRES 20 A 386 VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR LEU MET SEQRES 21 A 386 GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA VAL GLU SEQRES 22 A 386 ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO THR ARG SEQRES 23 A 386 SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP GLY PRO SEQRES 24 A 386 ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP LEU LYS SEQRES 25 A 386 PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS GLN LYS SEQRES 26 A 386 TRP SER ARG ALA TYR ILE HIS HIS LEU ILE ARG ALA GLY SEQRES 27 A 386 GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS ASN ILE SEQRES 28 A 386 ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG ASP SER SEQRES 29 A 386 ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN ASP PHE SEQRES 30 A 386 ARG ALA ARG TYR PHE ALA ARG ASN SER HET ZN A 401 1 HET GOL A 402 6 HET GOL A 403 6 HET 6N1 A 404 15 HET CL A 405 1 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM 6N1 2-{[2-(MORPHOLIN-4-YL)ETHYL]AMINO}-1H-BENZIMIDAZOLE-6- HETNAM 2 6N1 CARBOHYDRAZIDE HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 GOL 2(C3 H8 O3) FORMUL 5 6N1 C14 H20 N6 O2 FORMUL 6 CL CL 1- FORMUL 7 HOH *205(H2 O) HELIX 1 AA1 LYS A 55 THR A 62 1 8 HELIX 2 AA2 THR A 71 ARG A 77 1 7 HELIX 3 AA3 GLY A 79 LEU A 86 1 8 HELIX 4 AA4 GLY A 88 GLY A 94 1 7 HELIX 5 AA5 GLY A 104 SER A 112 1 9 HELIX 6 AA6 SER A 136 GLY A 148 1 13 HELIX 7 AA7 THR A 164 SER A 188 1 25 HELIX 8 AA8 ARG A 189 ALA A 196 1 8 HELIX 9 AA9 PHE A 207 GLY A 222 1 16 HELIX 10 AB1 GLU A 235 VAL A 248 1 14 HELIX 11 AB2 PRO A 249 LEU A 251 5 3 HELIX 12 AB3 LYS A 264 GLU A 273 1 10 HELIX 13 AB4 VAL A 282 ASN A 290 1 9 HELIX 14 AB5 ASN A 304 SER A 308 5 5 HELIX 15 AB6 CYS A 320 TRP A 326 1 7 HELIX 16 AB7 SER A 327 ALA A 337 1 11 HELIX 17 AB8 GLU A 339 GLU A 367 1 29 HELIX 18 AB9 ARG A 369 PHE A 382 1 14 SHEET 1 AA1 3 PHE A 14 GLU A 22 0 SHEET 2 AA1 3 ALA A 25 MET A 32 -1 O GLU A 31 N SER A 15 SHEET 3 AA1 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 AA2 8 ALA A 41 MET A 43 0 SHEET 2 AA2 8 MET A 278 ASP A 280 1 O PHE A 279 N MET A 43 SHEET 3 AA2 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 AA2 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 AA2 8 ALA A 197 GLN A 202 1 N GLN A 202 O ALA A 227 SHEET 6 AA2 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 AA2 8 ILE A 99 ASP A 102 1 N THR A 101 O ILE A 151 SHEET 8 AA2 8 ILE A 67 ASN A 70 1 N GLY A 69 O LEU A 100 SHEET 1 AA3 2 VAL A 122 LYS A 125 0 SHEET 2 AA3 2 ARG A 132 LEU A 135 -1 O LEU A 135 N VAL A 122 SHEET 1 AA4 2 GLN A 292 ALA A 293 0 SHEET 2 AA4 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.27 LINK SG CYS A 320 ZN ZN A 401 1555 1555 2.32 LINK SG CYS A 323 ZN ZN A 401 1555 1555 2.27 LINK ND1 HIS A 349 ZN ZN A 401 1555 1555 2.14 CISPEP 1 THR A 39 PRO A 40 0 -0.30 CISPEP 2 ARG A 77 PRO A 78 0 6.42 CISPEP 3 TYR A 161 PRO A 162 0 -4.40 CISPEP 4 VAL A 262 GLY A 263 0 -2.13 SITE 1 AC1 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC2 9 PRO A 56 GLU A 57 GLY A 94 TRP A 95 SITE 2 AC2 9 ASP A 96 ARG A 97 LYS A 325 HOH A 559 SITE 3 AC2 9 HOH A 642 SITE 1 AC3 6 GLU A 317 LYS A 360 PHE A 373 ARG A 380 SITE 2 AC3 6 HOH A 539 HOH A 597 SITE 1 AC4 10 TYR A 106 ASP A 156 CYS A 158 GLN A 203 SITE 2 AC4 10 GLY A 229 GLY A 230 LEU A 231 ALA A 232 SITE 3 AC4 10 MET A 260 GLY A 261 SITE 1 AC5 3 THR A 285 ARG A 289 HOH A 621 CRYST1 90.319 64.235 70.985 90.00 92.79 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011072 0.000000 0.000540 0.00000 SCALE2 0.000000 0.015568 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014104 0.00000