HEADER OXIDOREDUCTASE 09-MAY-16 5JTC TITLE ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE (ASPH)OXYGENASE AND TPR DOMAINS TITLE 2 IN COMPLEX WITH MANGANESE, 2,4-PYRIDINE DICARBOXYLATE AND FACTOR X TITLE 3 SUBSTRATE PEPTIDE FRAGMENT(39MER-4SER) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 330-758; COMPND 5 SYNONYM: ASPARTATE BETA-HYDROXYLASE,ASP BETA-HYDROXYLASE,PEPTIDE- COMPND 6 ASPARTATE BETA-DIOXYGENASE; COMPND 7 EC: 1.14.11.16; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: COAGULATION FACTOR X; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 86-124; COMPND 13 SYNONYM: STUART FACTOR,STUART-PROWER FACTOR; COMPND 14 EC: 3.4.21.6; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ASPH, BAH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-28A(+); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: F10; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 16 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PET-28A(+) KEYWDS 2-OXOGLUTARATE DEPENDENT OXYGENASE, ASPARTYL/ASPARAGINYL BETA- KEYWDS 2 HYDROXYLASE, EGF-LIKE DOMAIN HYDROXYLASE, DOUBLE STRANDED BETA- KEYWDS 3 HELIX, TETRATRICOPEPTIDE REPEAT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MCDONOUGH,I.PFEFFER REVDAT 3 10-JAN-24 5JTC 1 REMARK REVDAT 2 28-APR-21 5JTC 1 JRNL LINK REVDAT 1 24-MAY-17 5JTC 0 JRNL AUTH L.BREWITZ,A.TUMBER,I.PFEFFER,M.A.MCDONOUGH,C.J.SCHOFIELD JRNL TITL ASPARTATE/ASPARAGINE-BETA-HYDROXYLASE: A HIGH-THROUGHPUT JRNL TITL 2 MASS SPECTROMETRIC ASSAY FOR DISCOVERY OF SMALL MOLECULE JRNL TITL 3 INHIBITORS. JRNL REF SCI REP V. 10 8650 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 32457455 JRNL DOI 10.1038/S41598-020-65123-9 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_2386 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.51 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 27971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.120 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 537 ) REMARK 3 ORIGIN FOR THE GROUP (A): 65.2937 32.3764 50.1982 REMARK 3 T TENSOR REMARK 3 T11: 0.4073 T22: 0.3475 REMARK 3 T33: 0.4228 T12: 0.1354 REMARK 3 T13: -0.1230 T23: -0.0157 REMARK 3 L TENSOR REMARK 3 L11: 0.1522 L22: 3.2077 REMARK 3 L33: 4.9654 L12: 0.0494 REMARK 3 L13: -0.9535 L23: 3.9009 REMARK 3 S TENSOR REMARK 3 S11: 0.3081 S12: 0.1186 S13: -0.0928 REMARK 3 S21: -0.0682 S22: -0.1718 S23: 0.1678 REMARK 3 S31: 0.0954 S32: -0.1375 S33: -0.1223 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 538 THROUGH 758 ) REMARK 3 ORIGIN FOR THE GROUP (A): 53.7736 19.3409 16.4908 REMARK 3 T TENSOR REMARK 3 T11: 0.2246 T22: 0.3143 REMARK 3 T33: 0.2084 T12: -0.0792 REMARK 3 T13: 0.0050 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 3.2241 L22: 1.8488 REMARK 3 L33: 4.1362 L12: -0.2938 REMARK 3 L13: 1.9082 L23: 0.1574 REMARK 3 S TENSOR REMARK 3 S11: 0.0863 S12: -0.4480 S13: -0.1606 REMARK 3 S21: 0.2568 S22: 0.0747 S23: 0.0288 REMARK 3 S31: 0.3970 S32: -0.5824 S33: -0.0873 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 99 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 62.1800 24.8924 27.2402 REMARK 3 T TENSOR REMARK 3 T11: 0.2848 T22: 0.6041 REMARK 3 T33: 0.4278 T12: 0.0325 REMARK 3 T13: -0.0286 T23: -0.0482 REMARK 3 L TENSOR REMARK 3 L11: 6.9463 L22: 1.8325 REMARK 3 L33: 7.7591 L12: -0.8044 REMARK 3 L13: 6.0412 L23: -0.7977 REMARK 3 S TENSOR REMARK 3 S11: -0.1197 S12: 0.6390 S13: 0.0384 REMARK 3 S21: 0.4318 S22: 0.2020 S23: -0.1895 REMARK 3 S31: -0.2351 S32: 0.3343 S33: -0.0166 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 109 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.1628 31.5982 36.6373 REMARK 3 T TENSOR REMARK 3 T11: 0.7824 T22: 0.9074 REMARK 3 T33: 0.6114 T12: 0.2430 REMARK 3 T13: -0.1832 T23: -0.2908 REMARK 3 L TENSOR REMARK 3 L11: 1.5177 L22: 5.4455 REMARK 3 L33: 6.7361 L12: 2.7918 REMARK 3 L13: 0.6119 L23: -0.3200 REMARK 3 S TENSOR REMARK 3 S11: -0.3940 S12: -1.4202 S13: 1.2159 REMARK 3 S21: 0.2092 S22: 0.2930 S23: 0.5994 REMARK 3 S31: -0.3711 S32: -0.3937 S33: 0.1219 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JTC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221211. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28029 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 91.660 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : 0.03100 REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.70 REMARK 200 R MERGE FOR SHELL (I) : 0.89500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JQY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 200MM NABR, 100MM BISTRIS REMARK 280 PROPANE, 1MM MNCL2, 2MM 2,4-PDCA, 330UM ASPH, 726UM FACTOR X, PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.01000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.52500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.83000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.52500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.01000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.83000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 86 REMARK 465 GLY B 87 REMARK 465 ASP B 88 REMARK 465 GLN B 89 REMARK 465 SER B 90 REMARK 465 GLU B 91 REMARK 465 THR B 92 REMARK 465 SER B 93 REMARK 465 PRO B 94 REMARK 465 SER B 95 REMARK 465 GLN B 96 REMARK 465 ASN B 97 REMARK 465 GLN B 98 REMARK 465 GLU B 117 REMARK 465 GLY B 118 REMARK 465 LYS B 119 REMARK 465 ASN B 120 REMARK 465 SER B 121 REMARK 465 GLU B 122 REMARK 465 LEU B 123 REMARK 465 PHE B 124 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 330 CG CD CE NZ REMARK 470 LYS A 332 CE NZ REMARK 470 LYS A 336 CE NZ REMARK 470 LYS A 356 CE NZ REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 LYS A 541 CG CD CE NZ REMARK 470 LYS A 545 CE NZ REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 LYS A 609 CE NZ REMARK 470 LEU B 113 CG CD1 CD2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1043 O HOH A 1072 2.01 REMARK 500 O HOH A 1063 O HOH A 1073 2.01 REMARK 500 O HOH A 1084 O HOH B 213 2.07 REMARK 500 O HOH A 1010 O HOH A 1072 2.12 REMARK 500 NH2 ARG A 437 O HOH A 901 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 925 O HOH A 1085 4455 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 469 76.45 -100.57 REMARK 500 TYR A 583 52.83 -91.65 REMARK 500 ALA A 608 52.52 -151.36 REMARK 500 ALA A 644 58.94 -140.83 REMARK 500 ALA A 705 -124.64 63.64 REMARK 500 LYS B 102 -60.08 -93.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 801 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 679 NE2 REMARK 620 2 HIS A 725 NE2 80.9 REMARK 620 3 PD2 A 802 N1 100.9 101.4 REMARK 620 4 PD2 A 802 O22 177.8 100.3 77.1 REMARK 620 5 ASP B 103 OD2 96.5 177.3 79.9 82.3 REMARK 620 6 HOH B 203 O 93.4 91.5 162.0 88.4 87.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MN A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PD2 A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BR A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 804 DBREF 5JTC A 330 758 UNP Q12797 ASPH_HUMAN 330 758 DBREF 5JTC B 86 124 UNP P00742 FA10_HUMAN 86 124 SEQADV 5JTC SER B 90 UNP P00742 CYS 90 CONFLICT SEQADV 5JTC SER B 95 UNP P00742 CYS 95 CONFLICT SEQADV 5JTC SER B 112 UNP P00742 CYS 112 CONFLICT SEQADV 5JTC SER B 121 UNP P00742 CYS 121 CONFLICT SEQRES 1 A 429 LYS PRO LYS LEU LEU ASN LYS PHE ASP LYS THR ILE LYS SEQRES 2 A 429 ALA GLU LEU ASP ALA ALA GLU LYS LEU ARG LYS ARG GLY SEQRES 3 A 429 LYS ILE GLU GLU ALA VAL ASN ALA PHE LYS GLU LEU VAL SEQRES 4 A 429 ARG LYS TYR PRO GLN SER PRO ARG ALA ARG TYR GLY LYS SEQRES 5 A 429 ALA GLN CYS GLU ASP ASP LEU ALA GLU LYS ARG ARG SER SEQRES 6 A 429 ASN GLU VAL LEU ARG GLY ALA ILE GLU THR TYR GLN GLU SEQRES 7 A 429 VAL ALA SER LEU PRO ASP VAL PRO ALA ASP LEU LEU LYS SEQRES 8 A 429 LEU SER LEU LYS ARG ARG SER ASP ARG GLN GLN PHE LEU SEQRES 9 A 429 GLY HIS MET ARG GLY SER LEU LEU THR LEU GLN ARG LEU SEQRES 10 A 429 VAL GLN LEU PHE PRO ASN ASP THR SER LEU LYS ASN ASP SEQRES 11 A 429 LEU GLY VAL GLY TYR LEU LEU ILE GLY ASP ASN ASP ASN SEQRES 12 A 429 ALA LYS LYS VAL TYR GLU GLU VAL LEU SER VAL THR PRO SEQRES 13 A 429 ASN ASP GLY PHE ALA LYS VAL HIS TYR GLY PHE ILE LEU SEQRES 14 A 429 LYS ALA GLN ASN LYS ILE ALA GLU SER ILE PRO TYR LEU SEQRES 15 A 429 LYS GLU GLY ILE GLU SER GLY ASP PRO GLY THR ASP ASP SEQRES 16 A 429 GLY ARG PHE TYR PHE HIS LEU GLY ASP ALA MET GLN ARG SEQRES 17 A 429 VAL GLY ASN LYS GLU ALA TYR LYS TRP TYR GLU LEU GLY SEQRES 18 A 429 HIS LYS ARG GLY HIS PHE ALA SER VAL TRP GLN ARG SER SEQRES 19 A 429 LEU TYR ASN VAL ASN GLY LEU LYS ALA GLN PRO TRP TRP SEQRES 20 A 429 THR PRO LYS GLU THR GLY TYR THR GLU LEU VAL LYS SER SEQRES 21 A 429 LEU GLU ARG ASN TRP LYS LEU ILE ARG ASP GLU GLY LEU SEQRES 22 A 429 ALA VAL MET ASP LYS ALA LYS GLY LEU PHE LEU PRO GLU SEQRES 23 A 429 ASP GLU ASN LEU ARG GLU LYS GLY ASP TRP SER GLN PHE SEQRES 24 A 429 THR LEU TRP GLN GLN GLY ARG ARG ASN GLU ASN ALA CYS SEQRES 25 A 429 LYS GLY ALA PRO LYS THR CYS THR LEU LEU GLU LYS PHE SEQRES 26 A 429 PRO GLU THR THR GLY CYS ARG ARG GLY GLN ILE LYS TYR SEQRES 27 A 429 SER ILE MET HIS PRO GLY THR HIS VAL TRP PRO HIS THR SEQRES 28 A 429 GLY PRO THR ASN CYS ARG LEU ARG MET HIS LEU GLY LEU SEQRES 29 A 429 VAL ILE PRO LYS GLU GLY CYS LYS ILE ARG CYS ALA ASN SEQRES 30 A 429 GLU THR LYS THR TRP GLU GLU GLY LYS VAL LEU ILE PHE SEQRES 31 A 429 ASP ASP SER PHE GLU HIS GLU VAL TRP GLN ASP ALA SER SEQRES 32 A 429 SER PHE ARG LEU ILE PHE ILE VAL ASP VAL TRP HIS PRO SEQRES 33 A 429 GLU LEU THR PRO GLN GLN ARG ARG SER LEU PRO ALA ILE SEQRES 1 B 39 ASP GLY ASP GLN SER GLU THR SER PRO SER GLN ASN GLN SEQRES 2 B 39 GLY LYS CYS LYS ASP GLY LEU GLY GLU TYR THR CYS THR SEQRES 3 B 39 SER LEU GLU GLY PHE GLU GLY LYS ASN SER GLU LEU PHE HET MN A 801 1 HET PD2 A 802 12 HET BR A 803 1 HET GOL A 804 6 HETNAM MN MANGANESE (II) ION HETNAM PD2 PYRIDINE-2,4-DICARBOXYLIC ACID HETNAM BR BROMIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MN MN 2+ FORMUL 4 PD2 C7 H5 N O4 FORMUL 5 BR BR 1- FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *216(H2 O) HELIX 1 AA1 ASN A 335 ILE A 341 1 7 HELIX 2 AA2 ILE A 341 ARG A 354 1 14 HELIX 3 AA3 LYS A 356 TYR A 371 1 16 HELIX 4 AA4 SER A 374 ARG A 393 1 20 HELIX 5 AA5 SER A 394 LEU A 411 1 18 HELIX 6 AA6 PRO A 415 GLY A 434 1 20 HELIX 7 AA7 HIS A 435 PHE A 450 1 16 HELIX 8 AA8 ASP A 453 ILE A 467 1 15 HELIX 9 AA9 ASP A 469 THR A 484 1 16 HELIX 10 AB1 ASP A 487 GLN A 501 1 15 HELIX 11 AB2 LYS A 503 GLY A 518 1 16 HELIX 12 AB3 ASP A 524 VAL A 538 1 15 HELIX 13 AB4 GLU A 542 ARG A 553 1 12 HELIX 14 AB5 THR A 577 GLY A 582 1 6 HELIX 15 AB6 TYR A 583 ASN A 593 1 11 HELIX 16 AB7 ASN A 593 ALA A 608 1 16 HELIX 17 AB8 LYS A 609 PHE A 612 5 4 HELIX 18 AB9 ASN A 637 LYS A 642 1 6 HELIX 19 AC1 ALA A 644 GLU A 652 1 9 HELIX 20 AC2 PHE A 654 GLY A 659 1 6 HELIX 21 AC3 THR A 748 LEU A 755 1 8 SHEET 1 AA1 7 TRP A 575 TRP A 576 0 SHEET 2 AA1 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA1 7 ARG A 686 VAL A 694 -1 N HIS A 690 O LEU A 717 SHEET 4 AA1 7 ARG A 735 TRP A 743 -1 O PHE A 738 N LEU A 691 SHEET 5 AA1 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA1 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA1 7 LEU A 613 PRO A 614 -1 N LEU A 613 O GLN A 627 SHEET 1 AA2 7 TRP A 575 TRP A 576 0 SHEET 2 AA2 7 VAL A 716 PHE A 719 -1 O ILE A 718 N TRP A 576 SHEET 3 AA2 7 ARG A 686 VAL A 694 -1 N HIS A 690 O LEU A 717 SHEET 4 AA2 7 ARG A 735 TRP A 743 -1 O PHE A 738 N LEU A 691 SHEET 5 AA2 7 GLN A 664 MET A 670 -1 N LYS A 666 O ILE A 739 SHEET 6 AA2 7 TRP A 625 GLN A 632 -1 N LEU A 630 O ILE A 665 SHEET 7 AA2 7 ARG A 635 ARG A 636 -1 O ARG A 635 N GLN A 632 SHEET 1 AA3 5 ARG A 620 LYS A 622 0 SHEET 2 AA3 5 THR A 674 HIS A 679 -1 O HIS A 675 N GLU A 621 SHEET 3 AA3 5 HIS A 725 GLN A 729 -1 O VAL A 727 N VAL A 676 SHEET 4 AA3 5 CYS A 700 CYS A 704 -1 N ARG A 703 O GLU A 726 SHEET 5 AA3 5 GLU A 707 LYS A 709 -1 O LYS A 709 N ILE A 702 SSBOND 1 CYS A 641 CYS A 648 1555 1555 2.05 SSBOND 2 CYS B 101 CYS B 110 1555 1555 2.03 LINK NE2 HIS A 679 MN MN A 801 1555 1555 2.33 LINK NE2 HIS A 725 MN MN A 801 1555 1555 2.17 LINK MN MN A 801 N1 PD2 A 802 1555 1555 2.36 LINK MN MN A 801 O22 PD2 A 802 1555 1555 2.19 LINK MN MN A 801 OD2 ASP B 103 1555 1555 2.71 LINK MN MN A 801 O HOH B 203 1555 1555 2.20 SITE 1 AC1 5 HIS A 679 HIS A 725 PD2 A 802 ASP B 103 SITE 2 AC1 5 HOH B 203 SITE 1 AC2 15 TRP A 625 SER A 668 MET A 670 HIS A 679 SITE 2 AC2 15 ARG A 688 HIS A 690 HIS A 725 VAL A 727 SITE 3 AC2 15 ARG A 735 ILE A 737 MN A 801 HOH A 909 SITE 4 AC2 15 ASP B 103 HOH B 203 HOH B 206 SITE 1 AC3 4 TYR A 371 PRO A 372 GLN A 373 ASN A 639 SITE 1 AC4 5 LYS A 420 PHE A 450 PRO A 451 ASN A 452 SITE 2 AC4 5 ASP A 453 CRYST1 50.020 91.660 123.050 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019992 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010910 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008127 0.00000