HEADER HYDROLASE 09-MAY-16 5JTJ TITLE USP7CD-CTP IN COMPLEX WITH UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7,UBIQUITIN CARBOXYL- COMPND 3 TERMINAL HYDROLASE 7; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP RESIDUES 193-538 LINKED VIA GGSGG TO RESIDUES 1084- COMPND 6 1102; COMPND 7 SYNONYM: DEUBIQUITINATING ENZYME 7,HERPESVIRUS-ASSOCIATED UBIQUITIN- COMPND 8 SPECIFIC PROTEASE,UBIQUITIN THIOESTERASE 7,UBIQUITIN-SPECIFIC- COMPND 9 PROCESSING PROTEASE 7,DEUBIQUITINATING ENZYME 7,HERPESVIRUS- COMPND 10 ASSOCIATED UBIQUITIN-SPECIFIC PROTEASE,UBIQUITIN THIOESTERASE 7, COMPND 11 UBIQUITIN-SPECIFIC-PROCESSING PROTEASE 7; COMPND 12 EC: 3.4.19.12; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 2; COMPND 15 MOLECULE: POLYUBIQUITIN-B; COMPND 16 CHAIN: B; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: USP7, HAUSP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UBB; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS USP7, HAUSP, C-TERMINAL ACTIVATION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MURRAY,L.ROUGE REVDAT 3 27-SEP-23 5JTJ 1 JRNL REMARK REVDAT 2 17-AUG-16 5JTJ 1 JRNL REVDAT 1 10-AUG-16 5JTJ 0 JRNL AUTH L.ROUGE,T.W.BAINBRIDGE,M.KWOK,R.TONG,P.DI LELLO,I.E.WERTZ, JRNL AUTH 2 T.MAURER,J.A.ERNST,J.MURRAY JRNL TITL MOLECULAR UNDERSTANDING OF USP7 SUBSTRATE RECOGNITION AND JRNL TITL 2 C-TERMINAL ACTIVATION. JRNL REF STRUCTURE V. 24 1335 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27452404 JRNL DOI 10.1016/J.STR.2016.05.020 REMARK 2 REMARK 2 RESOLUTION. 3.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 17795 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 74.0484 - 6.3511 1.00 2586 150 0.1803 0.1961 REMARK 3 2 6.3511 - 5.0414 1.00 2447 119 0.1909 0.2074 REMARK 3 3 5.0414 - 4.4042 1.00 2396 128 0.1595 0.1827 REMARK 3 4 4.4042 - 4.0015 1.00 2363 142 0.1737 0.1673 REMARK 3 5 4.0015 - 3.7147 1.00 2369 135 0.2157 0.2469 REMARK 3 6 3.7147 - 3.4957 1.00 2360 123 0.2358 0.2519 REMARK 3 7 3.4957 - 3.3210 1.00 2335 142 0.2921 0.3390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 106.9 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 111.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3532 REMARK 3 ANGLE : 0.960 4765 REMARK 3 CHIRALITY : 0.051 523 REMARK 3 PLANARITY : 0.005 621 REMARK 3 DIHEDRAL : 15.789 2147 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 209 THROUGH 325 ) REMARK 3 ORIGIN FOR THE GROUP (A): -53.9959 31.2832 -7.5328 REMARK 3 T TENSOR REMARK 3 T11: 1.5272 T22: 0.8028 REMARK 3 T33: 0.8669 T12: -0.3250 REMARK 3 T13: -0.2503 T23: 0.0668 REMARK 3 L TENSOR REMARK 3 L11: 4.1817 L22: 3.5722 REMARK 3 L33: 4.6190 L12: 0.6494 REMARK 3 L13: -1.7530 L23: -1.3788 REMARK 3 S TENSOR REMARK 3 S11: 0.2276 S12: -0.3570 S13: -0.0356 REMARK 3 S21: 0.8183 S22: -0.4124 S23: -0.5240 REMARK 3 S31: -1.0497 S32: 0.6351 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 326 THROUGH 537 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.3438 11.0575 -16.1984 REMARK 3 T TENSOR REMARK 3 T11: 1.1243 T22: 0.6743 REMARK 3 T33: 1.1770 T12: -0.1074 REMARK 3 T13: 0.0068 T23: 0.0242 REMARK 3 L TENSOR REMARK 3 L11: 2.4381 L22: 3.2534 REMARK 3 L33: 4.4438 L12: 1.4626 REMARK 3 L13: -1.0072 L23: -1.6160 REMARK 3 S TENSOR REMARK 3 S11: -0.3914 S12: 0.1106 S13: -0.6259 REMARK 3 S21: -0.0405 S22: -0.0810 S23: -0.6067 REMARK 3 S31: 0.3468 S32: 0.0839 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 538 THROUGH 1102 ) REMARK 3 ORIGIN FOR THE GROUP (A): -55.6962 41.1068 -4.7405 REMARK 3 T TENSOR REMARK 3 T11: 2.2191 T22: 1.0598 REMARK 3 T33: 1.1195 T12: -0.3069 REMARK 3 T13: -0.3640 T23: 0.1115 REMARK 3 L TENSOR REMARK 3 L11: 0.1936 L22: 1.9367 REMARK 3 L33: 2.4404 L12: -0.1048 REMARK 3 L13: -0.7780 L23: 0.3471 REMARK 3 S TENSOR REMARK 3 S11: -1.1799 S12: -0.1918 S13: 0.9103 REMARK 3 S21: 0.2802 S22: 0.1987 S23: -0.2343 REMARK 3 S31: -1.9346 S32: 0.4401 S33: 0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): -71.1871 18.4421 -32.6871 REMARK 3 T TENSOR REMARK 3 T11: 1.3676 T22: 1.1475 REMARK 3 T33: 0.9640 T12: -0.4212 REMARK 3 T13: 0.0009 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 0.3834 L22: 0.1680 REMARK 3 L33: 0.6919 L12: -0.2269 REMARK 3 L13: -0.4986 L23: 0.3378 REMARK 3 S TENSOR REMARK 3 S11: -0.4163 S12: 0.8858 S13: 0.0273 REMARK 3 S21: -0.0775 S22: 0.3510 S23: 0.7695 REMARK 3 S31: 0.2751 S32: -0.2087 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -76.3146 21.8839 -24.6466 REMARK 3 T TENSOR REMARK 3 T11: 1.2955 T22: 1.0567 REMARK 3 T33: 0.9307 T12: -0.2152 REMARK 3 T13: -0.0063 T23: 0.1011 REMARK 3 L TENSOR REMARK 3 L11: 0.3859 L22: 0.1099 REMARK 3 L33: 0.3133 L12: 0.2154 REMARK 3 L13: -0.0467 L23: -0.0177 REMARK 3 S TENSOR REMARK 3 S11: -0.1420 S12: 0.0324 S13: 0.2068 REMARK 3 S21: -0.0385 S22: 0.3748 S23: 0.6632 REMARK 3 S31: -0.0806 S32: -0.7450 S33: -0.0001 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.6929 28.8099 -25.3893 REMARK 3 T TENSOR REMARK 3 T11: 1.2370 T22: 0.9804 REMARK 3 T33: 0.9352 T12: -0.2399 REMARK 3 T13: 0.0289 T23: -0.0355 REMARK 3 L TENSOR REMARK 3 L11: 0.0243 L22: 0.1335 REMARK 3 L33: 0.1343 L12: -0.0594 REMARK 3 L13: 0.0044 L23: -0.0662 REMARK 3 S TENSOR REMARK 3 S11: -0.7790 S12: -0.1123 S13: 1.0553 REMARK 3 S21: 0.2020 S22: 0.3785 S23: -0.1134 REMARK 3 S31: -1.3452 S32: 0.1159 S33: 0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -66.6137 22.5028 -26.0284 REMARK 3 T TENSOR REMARK 3 T11: 1.1483 T22: 0.8264 REMARK 3 T33: 0.8566 T12: -0.1610 REMARK 3 T13: -0.0246 T23: -0.1057 REMARK 3 L TENSOR REMARK 3 L11: 1.3910 L22: 1.0709 REMARK 3 L33: 0.5209 L12: -0.4240 REMARK 3 L13: 0.7278 L23: -0.5836 REMARK 3 S TENSOR REMARK 3 S11: -0.5598 S12: 0.7339 S13: -0.1699 REMARK 3 S21: -0.2219 S22: 0.5913 S23: -0.4888 REMARK 3 S31: -0.1908 S32: -1.0711 S33: -0.0003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JTJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221139. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAR-15 REMARK 200 TEMPERATURE (KELVIN) : 170 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17846 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.321 REMARK 200 RESOLUTION RANGE LOW (A) : 74.030 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 21.20 REMARK 200 R MERGE (I) : 0.18500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.33 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 21.80 REMARK 200 R MERGE FOR SHELL (I) : 1.88100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1NBF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M CALCIUM CHLORIDE, 0.1 M MES PH REMARK 280 6.0 AND 45% PEG 200, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 119.96667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.98333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 119.96667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.98333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 119.96667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 59.98333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 119.96667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.98333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 67910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -148.06000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 -148.06000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA A1201 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 GLY A 199 REMARK 465 GLU A 200 REMARK 465 ASN A 201 REMARK 465 LEU A 202 REMARK 465 TYR A 203 REMARK 465 PHE A 204 REMARK 465 GLN A 205 REMARK 465 GLY A 206 REMARK 465 SER A 207 REMARK 465 LYS A 208 REMARK 465 GLY A 1079 REMARK 465 GLY A 1080 REMARK 465 SER A 1081 REMARK 465 GLY A 1082 REMARK 465 GLY A 1083 REMARK 465 LYS A 1084 REMARK 465 ALA A 1085 REMARK 465 PRO A 1086 REMARK 465 LYS A 1087 REMARK 465 ARG A 1088 REMARK 465 SER A 1089 REMARK 465 ARG A 1090 REMARK 465 TYR A 1091 REMARK 465 THR A 1092 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 414 CG CD OE1 NE2 REMARK 470 ARG A 508 CZ NH1 NH2 REMARK 470 GLN A 545 CG CD OE1 NE2 REMARK 470 GLU A 546 CG CD OE1 OE2 REMARK 470 LYS B 11 CG CD CE NZ REMARK 470 GLY B 76 O REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ILE A 550 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 223 C GLY B 76 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 210 38.18 -81.90 REMARK 500 MET A 244 34.23 -96.16 REMARK 500 TYR A 339 116.17 -163.44 REMARK 500 ALA A 369 -179.49 -66.92 REMARK 500 HIS A 384 20.75 -76.83 REMARK 500 MET A 407 83.46 -58.88 REMARK 500 ARG A 408 41.52 -96.56 REMARK 500 ASP A 416 71.58 57.90 REMARK 500 ASN A 460 -121.81 57.93 REMARK 500 ASN A 470 77.57 -117.40 REMARK 500 ASP A 474 -159.35 -76.13 REMARK 500 ASP A 482 -129.43 52.34 REMARK 500 ILE A 494 -69.92 -107.86 REMARK 500 ASP A 503 65.44 68.04 REMARK 500 CYS A 510 40.92 -87.26 REMARK 500 LYS A 523 34.01 -91.95 REMARK 500 THR B 7 -172.91 -68.32 REMARK 500 LEU B 71 -164.49 -112.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 75 GLY B 76 -141.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5J7T RELATED DB: PDB REMARK 900 RELATED ID: 5JTV RELATED DB: PDB DBREF 5JTJ A 209 554 UNP Q93009 UBP7_HUMAN 193 538 DBREF 5JTJ A 1084 1102 UNP Q93009 UBP7_HUMAN 1084 1102 DBREF 5JTJ B 1 76 UNP P0CG47 UBB_HUMAN 1 76 SEQADV 5JTJ MET A 192 UNP Q93009 INITIATING METHIONINE SEQADV 5JTJ HIS A 193 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ HIS A 194 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ HIS A 195 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ HIS A 196 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ HIS A 197 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ HIS A 198 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ GLY A 199 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ GLU A 200 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ ASN A 201 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ LEU A 202 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ TYR A 203 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ PHE A 204 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ GLN A 205 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ GLY A 206 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ SER A 207 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ LYS A 208 UNP Q93009 EXPRESSION TAG SEQADV 5JTJ GLY A 1079 UNP Q93009 LINKER SEQADV 5JTJ GLY A 1080 UNP Q93009 LINKER SEQADV 5JTJ SER A 1081 UNP Q93009 LINKER SEQADV 5JTJ GLY A 1082 UNP Q93009 LINKER SEQADV 5JTJ GLY A 1083 UNP Q93009 LINKER SEQRES 1 A 387 MET HIS HIS HIS HIS HIS HIS GLY GLU ASN LEU TYR PHE SEQRES 2 A 387 GLN GLY SER LYS LYS HIS THR GLY TYR VAL GLY LEU LYS SEQRES 3 A 387 ASN GLN GLY ALA THR CYS TYR MET ASN SER LEU LEU GLN SEQRES 4 A 387 THR LEU PHE PHE THR ASN GLN LEU ARG LYS ALA VAL TYR SEQRES 5 A 387 MET MET PRO THR GLU GLY ASP ASP SER SER LYS SER VAL SEQRES 6 A 387 PRO LEU ALA LEU GLN ARG VAL PHE TYR GLU LEU GLN HIS SEQRES 7 A 387 SER ASP LYS PRO VAL GLY THR LYS LYS LEU THR LYS SER SEQRES 8 A 387 PHE GLY TRP GLU THR LEU ASP SER PHE MET GLN HIS ASP SEQRES 9 A 387 VAL GLN GLU LEU CYS ARG VAL LEU LEU ASP ASN VAL GLU SEQRES 10 A 387 ASN LYS MET LYS GLY THR CYS VAL GLU GLY THR ILE PRO SEQRES 11 A 387 LYS LEU PHE ARG GLY LYS MET VAL SER TYR ILE GLN CYS SEQRES 12 A 387 LYS GLU VAL ASP TYR ARG SER ASP ARG ARG GLU ASP TYR SEQRES 13 A 387 TYR ASP ILE GLN LEU SER ILE LYS GLY LYS LYS ASN ILE SEQRES 14 A 387 PHE GLU SER PHE VAL ASP TYR VAL ALA VAL GLU GLN LEU SEQRES 15 A 387 ASP GLY ASP ASN LYS TYR ASP ALA GLY GLU HIS GLY LEU SEQRES 16 A 387 GLN GLU ALA GLU LYS GLY VAL LYS PHE LEU THR LEU PRO SEQRES 17 A 387 PRO VAL LEU HIS LEU GLN LEU MET ARG PHE MET TYR ASP SEQRES 18 A 387 PRO GLN THR ASP GLN ASN ILE LYS ILE ASN ASP ARG PHE SEQRES 19 A 387 GLU PHE PRO GLU GLN LEU PRO LEU ASP GLU PHE LEU GLN SEQRES 20 A 387 LYS THR ASP PRO LYS ASP PRO ALA ASN TYR ILE LEU HIS SEQRES 21 A 387 ALA VAL LEU VAL HIS SER GLY ASP ASN HIS GLY GLY HIS SEQRES 22 A 387 TYR VAL VAL TYR LEU ASN PRO LYS GLY ASP GLY LYS TRP SEQRES 23 A 387 CYS LYS PHE ASP ASP ASP VAL VAL SER ARG CYS THR LYS SEQRES 24 A 387 GLU GLU ALA ILE GLU HIS ASN TYR GLY GLY HIS ASP ASP SEQRES 25 A 387 ASP LEU SER VAL ARG HIS CYS THR ASN ALA TYR MET LEU SEQRES 26 A 387 VAL TYR ILE ARG GLU SER LYS LEU SER GLU VAL LEU GLN SEQRES 27 A 387 ALA VAL THR ASP HIS ASP ILE PRO GLN GLN LEU VAL GLU SEQRES 28 A 387 ARG LEU GLN GLU GLU LYS ARG ILE GLU ALA GLN LYS GLY SEQRES 29 A 387 GLY SER GLY GLY LYS ALA PRO LYS ARG SER ARG TYR THR SEQRES 30 A 387 TYR LEU GLU LYS ALA ILE LYS ILE HIS ASN SEQRES 1 B 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 B 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 B 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 B 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 B 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 B 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET CA A1201 1 HETNAM CA CALCIUM ION FORMUL 3 CA CA 2+ HELIX 1 AA1 THR A 222 PHE A 234 1 13 HELIX 2 AA2 THR A 235 MET A 244 1 10 HELIX 3 AA3 SER A 255 SER A 270 1 16 HELIX 4 AA4 THR A 276 PHE A 283 1 8 HELIX 5 AA5 GLU A 286 MET A 292 5 7 HELIX 6 AA6 ASP A 295 LYS A 312 1 18 HELIX 7 AA7 GLY A 318 ARG A 325 1 8 HELIX 8 AA8 ASN A 359 ALA A 369 1 11 HELIX 9 AA9 ASP A 374 LYS A 378 5 5 HELIX 10 AB1 GLY A 382 HIS A 384 5 3 HELIX 11 AB2 ASP A 434 LEU A 437 5 4 HELIX 12 AB3 THR A 489 ILE A 494 1 6 HELIX 13 AB4 GLU A 495 GLY A 499 5 5 HELIX 14 AB5 LYS A 523 LEU A 528 1 6 HELIX 15 AB6 PRO A 537 LYS A 554 1 18 HELIX 16 AB7 THR B 22 GLY B 35 1 14 SHEET 1 AA1 4 ARG A 340 TYR A 347 0 SHEET 2 AA1 4 GLY A 326 CYS A 334 -1 N SER A 330 O ARG A 343 SHEET 3 AA1 4 ALA A 389 THR A 397 -1 O LYS A 394 N VAL A 329 SHEET 4 AA1 4 VAL A 370 LEU A 373 -1 N GLU A 371 O LYS A 391 SHEET 1 AA2 5 ILE A 350 SER A 353 0 SHEET 2 AA2 5 VAL A 401 MET A 407 1 O GLN A 405 N ILE A 350 SHEET 3 AA2 5 THR A 511 ARG A 520 -1 O TYR A 518 N LEU A 402 SHEET 4 AA2 5 ASN A 447 SER A 457 -1 N LEU A 454 O TYR A 514 SHEET 5 AA2 5 GLN A 430 PRO A 432 -1 N LEU A 431 O TYR A 448 SHEET 1 AA3 7 ILE A 350 SER A 353 0 SHEET 2 AA3 7 VAL A 401 MET A 407 1 O GLN A 405 N ILE A 350 SHEET 3 AA3 7 THR A 511 ARG A 520 -1 O TYR A 518 N LEU A 402 SHEET 4 AA3 7 ASN A 447 SER A 457 -1 N LEU A 454 O TYR A 514 SHEET 5 AA3 7 HIS A 464 LEU A 469 -1 O VAL A 466 N VAL A 455 SHEET 6 AA3 7 TRP A 477 ASP A 481 -1 O PHE A 480 N VAL A 467 SHEET 7 AA3 7 VAL A 484 CYS A 488 -1 O SER A 486 N LYS A 479 SHEET 1 AA4 2 TYR A 379 ASP A 380 0 SHEET 2 AA4 2 LEU A 386 GLN A 387 -1 O GLN A 387 N TYR A 379 SHEET 1 AA5 2 PHE A 409 ASP A 412 0 SHEET 2 AA5 2 GLN A 417 LYS A 420 -1 O GLN A 417 N ASP A 412 SHEET 1 AA6 5 THR B 12 GLU B 16 0 SHEET 2 AA6 5 GLN B 2 LYS B 6 -1 N VAL B 5 O ILE B 13 SHEET 3 AA6 5 THR B 66 VAL B 70 1 O LEU B 67 N LYS B 6 SHEET 4 AA6 5 ARG B 42 PHE B 45 -1 N ILE B 44 O HIS B 68 SHEET 5 AA6 5 LYS B 48 GLN B 49 -1 O LYS B 48 N PHE B 45 SSBOND 1 CYS A 510 CYS A 510 1555 11455 2.06 SITE 1 AC1 1 HIS A 501 CRYST1 148.060 148.060 179.950 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006754 0.003899 0.000000 0.00000 SCALE2 0.000000 0.007799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005557 0.00000