HEADER CHAPERONE/HYDROLASE 09-MAY-16 5JTP TITLE THE STRUCTURE OF CHAPERONE SECB IN COMPLEX WITH UNSTRUCTURED PROPHOA TITLE 2 BINDING SITE E COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-EXPORT PROTEIN SECB; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ALKALINE PHOSPHATASE; COMPND 7 CHAIN: E, F, G, H; COMPND 8 FRAGMENT: RESIDUES 450-471; COMPND 9 SYNONYM: APASE; COMPND 10 EC: 3.1.3.1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: SECB, Z5036, ECS4487; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 9 ORGANISM_TAXID: 83333; SOURCE 10 STRAIN: K12; SOURCE 11 GENE: PHOA, B0383, JW0374; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS MOLECULAR CHAPERONE, CHAPERONE-HYDROLASE COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.HUANG,T.SAIO,P.ROSSI,C.G.KALODIMOS REVDAT 3 14-JUN-23 5JTP 1 COMPND JRNL REMARK REVDAT 2 21-SEP-16 5JTP 1 JRNL REVDAT 1 24-AUG-16 5JTP 0 JRNL AUTH C.HUANG,P.ROSSI,T.SAIO,C.G.KALODIMOS JRNL TITL STRUCTURAL BASIS FOR THE ANTIFOLDING ACTIVITY OF A MOLECULAR JRNL TITL 2 CHAPERONE. JRNL REF NATURE V. 537 202 2016 JRNL REFN ESSN 1476-4687 JRNL PMID 27501151 JRNL DOI 10.1038/NATURE18965 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221105. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 301 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 300 UM [U-100% 13C; U-100% 15N] REMARK 210 E.COLI CHAPERONE SECB, 300 UM [U- REMARK 210 100% 13C; U-100% 15N] E. COLI REMARK 210 ALKALINE PHOSPHATASE (PHOA) REMARK 210 BINDING SITE E, 150 MM POTASSIUM REMARK 210 CHLORIDE, 50 MM SODIUM PHOSPHATE, REMARK 210 50 MM POTASSIUM PHOSPHATE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRVIEW, NMRPIPE REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 5 -84.82 -151.45 REMARK 500 1 ASN A 6 108.09 171.63 REMARK 500 1 ARG A 15 148.28 -172.17 REMARK 500 1 ALA A 100 -60.75 -143.32 REMARK 500 1 GLN A 142 30.75 -172.14 REMARK 500 1 GLN A 143 78.75 59.81 REMARK 500 1 GLN A 144 -43.77 76.10 REMARK 500 1 ALA A 145 -77.48 67.56 REMARK 500 1 GLU A 147 157.79 66.55 REMARK 500 1 GLU A 150 92.24 -63.13 REMARK 500 1 HIS A 152 82.51 62.55 REMARK 500 1 ASN B 6 106.38 65.08 REMARK 500 1 GLU B 8 -71.56 -99.76 REMARK 500 1 MET B 9 167.23 47.45 REMARK 500 1 ASP B 54 -1.19 67.03 REMARK 500 1 ALA B 73 -67.14 -97.76 REMARK 500 1 ALA B 100 -56.30 -146.99 REMARK 500 1 THR B 149 106.21 -58.17 REMARK 500 1 GLN B 153 80.33 50.50 REMARK 500 1 ASN C 5 92.52 57.33 REMARK 500 1 MET C 9 112.61 64.05 REMARK 500 1 ARG C 15 125.89 -174.33 REMARK 500 1 GLN C 37 73.16 -160.56 REMARK 500 1 LEU C 68 49.29 -84.92 REMARK 500 1 ALA C 100 -60.21 -158.56 REMARK 500 1 PRO C 130 103.29 -59.07 REMARK 500 1 TYR C 140 -81.70 -67.20 REMARK 500 1 GLN C 142 93.94 65.26 REMARK 500 1 GLN C 143 88.14 -69.34 REMARK 500 1 HIS C 152 133.37 -171.16 REMARK 500 1 GLN D 4 71.19 53.04 REMARK 500 1 ASN D 6 79.12 -111.93 REMARK 500 1 THR D 7 66.40 -155.89 REMARK 500 1 GLU D 8 147.42 67.03 REMARK 500 1 MET D 9 125.45 -34.43 REMARK 500 1 PHE D 11 91.34 -164.01 REMARK 500 1 ALA D 28 -70.26 -18.61 REMARK 500 1 ALA D 73 -68.67 -91.19 REMARK 500 1 ALA D 100 -58.25 -149.36 REMARK 500 1 GLN D 142 32.96 -86.73 REMARK 500 1 THR D 149 99.04 -68.35 REMARK 500 1 HIS D 152 99.84 60.60 REMARK 500 1 VAL E 451 29.00 -168.00 REMARK 500 1 THR E 458 94.83 -69.66 REMARK 500 1 ASP E 459 146.69 73.47 REMARK 500 1 LEU E 460 -71.87 -74.69 REMARK 500 1 PHE E 461 18.86 -175.37 REMARK 500 1 THR E 463 -60.19 -95.46 REMARK 500 1 MET E 464 125.91 82.11 REMARK 500 1 ASP F 456 68.82 74.11 REMARK 500 REMARK 500 THIS ENTRY HAS 1109 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 10 PHE B 11 18 147.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30084 RELATED DB: BMRB REMARK 900 RELATED ID: 5JTL RELATED DB: PDB REMARK 900 RELATED ID: 5JTM RELATED DB: PDB REMARK 900 RELATED ID: 5JTN RELATED DB: PDB REMARK 900 RELATED ID: 5JTQ RELATED DB: PDB REMARK 900 RELATED ID: 5JTO RELATED DB: PDB REMARK 900 RELATED ID: 5JTR RELATED DB: PDB DBREF 5JTP A 1 155 UNP P0AG88 SECB_ECO57 1 155 DBREF 5JTP B 1 155 UNP P0AG88 SECB_ECO57 1 155 DBREF 5JTP C 1 155 UNP P0AG88 SECB_ECO57 1 155 DBREF 5JTP D 1 155 UNP P0AG88 SECB_ECO57 1 155 DBREF 5JTP E 450 471 UNP P00634 PPB_ECOLI 450 471 DBREF 5JTP F 450 471 UNP P00634 PPB_ECOLI 450 471 DBREF 5JTP G 450 471 UNP P00634 PPB_ECOLI 450 471 DBREF 5JTP H 450 471 UNP P00634 PPB_ECOLI 450 471 SEQRES 1 A 155 MET SER GLU GLN ASN ASN THR GLU MET THR PHE GLN ILE SEQRES 2 A 155 GLN ARG ILE TYR THR LYS ASP ILE SER PHE GLU ALA PRO SEQRES 3 A 155 ASN ALA PRO HIS VAL PHE GLN LYS ASP TRP GLN PRO GLU SEQRES 4 A 155 VAL LYS LEU ASP LEU ASP THR ALA SER SER GLN LEU ALA SEQRES 5 A 155 ASP ASP VAL TYR GLU VAL VAL LEU ARG VAL THR VAL THR SEQRES 6 A 155 ALA SER LEU GLY GLU GLU THR ALA PHE LEU CYS GLU VAL SEQRES 7 A 155 GLN GLN GLY GLY ILE PHE SER ILE ALA GLY ILE GLU GLY SEQRES 8 A 155 THR GLN MET ALA HIS CYS LEU GLY ALA TYR CYS PRO ASN SEQRES 9 A 155 ILE LEU PHE PRO TYR ALA ARG GLU CYS ILE THR SER MET SEQRES 10 A 155 VAL SER ARG GLY THR PHE PRO GLN LEU ASN LEU ALA PRO SEQRES 11 A 155 VAL ASN PHE ASP ALA LEU PHE MET ASN TYR LEU GLN GLN SEQRES 12 A 155 GLN ALA GLY GLU GLY THR GLU GLU HIS GLN ASP ALA SEQRES 1 B 155 MET SER GLU GLN ASN ASN THR GLU MET THR PHE GLN ILE SEQRES 2 B 155 GLN ARG ILE TYR THR LYS ASP ILE SER PHE GLU ALA PRO SEQRES 3 B 155 ASN ALA PRO HIS VAL PHE GLN LYS ASP TRP GLN PRO GLU SEQRES 4 B 155 VAL LYS LEU ASP LEU ASP THR ALA SER SER GLN LEU ALA SEQRES 5 B 155 ASP ASP VAL TYR GLU VAL VAL LEU ARG VAL THR VAL THR SEQRES 6 B 155 ALA SER LEU GLY GLU GLU THR ALA PHE LEU CYS GLU VAL SEQRES 7 B 155 GLN GLN GLY GLY ILE PHE SER ILE ALA GLY ILE GLU GLY SEQRES 8 B 155 THR GLN MET ALA HIS CYS LEU GLY ALA TYR CYS PRO ASN SEQRES 9 B 155 ILE LEU PHE PRO TYR ALA ARG GLU CYS ILE THR SER MET SEQRES 10 B 155 VAL SER ARG GLY THR PHE PRO GLN LEU ASN LEU ALA PRO SEQRES 11 B 155 VAL ASN PHE ASP ALA LEU PHE MET ASN TYR LEU GLN GLN SEQRES 12 B 155 GLN ALA GLY GLU GLY THR GLU GLU HIS GLN ASP ALA SEQRES 1 C 155 MET SER GLU GLN ASN ASN THR GLU MET THR PHE GLN ILE SEQRES 2 C 155 GLN ARG ILE TYR THR LYS ASP ILE SER PHE GLU ALA PRO SEQRES 3 C 155 ASN ALA PRO HIS VAL PHE GLN LYS ASP TRP GLN PRO GLU SEQRES 4 C 155 VAL LYS LEU ASP LEU ASP THR ALA SER SER GLN LEU ALA SEQRES 5 C 155 ASP ASP VAL TYR GLU VAL VAL LEU ARG VAL THR VAL THR SEQRES 6 C 155 ALA SER LEU GLY GLU GLU THR ALA PHE LEU CYS GLU VAL SEQRES 7 C 155 GLN GLN GLY GLY ILE PHE SER ILE ALA GLY ILE GLU GLY SEQRES 8 C 155 THR GLN MET ALA HIS CYS LEU GLY ALA TYR CYS PRO ASN SEQRES 9 C 155 ILE LEU PHE PRO TYR ALA ARG GLU CYS ILE THR SER MET SEQRES 10 C 155 VAL SER ARG GLY THR PHE PRO GLN LEU ASN LEU ALA PRO SEQRES 11 C 155 VAL ASN PHE ASP ALA LEU PHE MET ASN TYR LEU GLN GLN SEQRES 12 C 155 GLN ALA GLY GLU GLY THR GLU GLU HIS GLN ASP ALA SEQRES 1 D 155 MET SER GLU GLN ASN ASN THR GLU MET THR PHE GLN ILE SEQRES 2 D 155 GLN ARG ILE TYR THR LYS ASP ILE SER PHE GLU ALA PRO SEQRES 3 D 155 ASN ALA PRO HIS VAL PHE GLN LYS ASP TRP GLN PRO GLU SEQRES 4 D 155 VAL LYS LEU ASP LEU ASP THR ALA SER SER GLN LEU ALA SEQRES 5 D 155 ASP ASP VAL TYR GLU VAL VAL LEU ARG VAL THR VAL THR SEQRES 6 D 155 ALA SER LEU GLY GLU GLU THR ALA PHE LEU CYS GLU VAL SEQRES 7 D 155 GLN GLN GLY GLY ILE PHE SER ILE ALA GLY ILE GLU GLY SEQRES 8 D 155 THR GLN MET ALA HIS CYS LEU GLY ALA TYR CYS PRO ASN SEQRES 9 D 155 ILE LEU PHE PRO TYR ALA ARG GLU CYS ILE THR SER MET SEQRES 10 D 155 VAL SER ARG GLY THR PHE PRO GLN LEU ASN LEU ALA PRO SEQRES 11 D 155 VAL ASN PHE ASP ALA LEU PHE MET ASN TYR LEU GLN GLN SEQRES 12 D 155 GLN ALA GLY GLU GLY THR GLU GLU HIS GLN ASP ALA SEQRES 1 E 22 ASN VAL VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR SEQRES 2 E 22 THR MET LYS ALA ALA LEU GLY LEU LYS SEQRES 1 F 22 ASN VAL VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR SEQRES 2 F 22 THR MET LYS ALA ALA LEU GLY LEU LYS SEQRES 1 G 22 ASN VAL VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR SEQRES 2 G 22 THR MET LYS ALA ALA LEU GLY LEU LYS SEQRES 1 H 22 ASN VAL VAL GLY LEU THR ASP GLN THR ASP LEU PHE TYR SEQRES 2 H 22 THR MET LYS ALA ALA LEU GLY LEU LYS HELIX 1 AA1 ASN A 27 LYS A 34 1 8 HELIX 2 AA2 GLU A 90 ALA A 100 1 11 HELIX 3 AA3 ALA A 100 GLY A 121 1 22 HELIX 4 AA4 ASN A 132 GLN A 143 1 12 HELIX 5 AA5 ASN B 27 PHE B 32 1 6 HELIX 6 AA6 GLY B 91 ALA B 100 1 10 HELIX 7 AA7 ALA B 100 GLY B 121 1 22 HELIX 8 AA8 ASN B 132 LEU B 141 1 10 HELIX 9 AA9 ASN C 27 GLN C 33 1 7 HELIX 10 AB1 GLY C 91 ALA C 100 1 10 HELIX 11 AB2 ALA C 100 GLY C 121 1 22 HELIX 12 AB3 ASN C 132 LEU C 141 1 10 HELIX 13 AB4 ASN D 27 PHE D 32 1 6 HELIX 14 AB5 GLU D 90 GLY D 99 1 10 HELIX 15 AB6 ALA D 100 GLY D 121 1 22 HELIX 16 AB7 ASN D 132 GLN D 142 1 11 SHEET 1 AA1 8 VAL A 40 ALA A 52 0 SHEET 2 AA1 8 VAL A 55 LEU A 68 -1 O GLU A 57 N SER A 49 SHEET 3 AA1 8 GLU A 71 ALA A 87 -1 O CYS A 76 N VAL A 64 SHEET 4 AA1 8 THR A 10 GLU A 24 -1 N TYR A 17 O GLY A 81 SHEET 5 AA1 8 ILE B 13 GLU B 24 -1 O ILE B 21 N PHE A 23 SHEET 6 AA1 8 GLU B 71 SER B 85 -1 O GLN B 79 N LYS B 19 SHEET 7 AA1 8 VAL B 55 LEU B 68 -1 N VAL B 62 O VAL B 78 SHEET 8 AA1 8 GLU B 39 ALA B 52 -1 N ASP B 45 O ARG B 61 SHEET 1 AA2 6 THR C 10 THR C 18 0 SHEET 2 AA2 6 THR C 72 ALA C 87 -1 O ILE C 83 N ARG C 15 SHEET 3 AA2 6 ASP C 20 GLU C 24 -1 N SER C 22 O GLU C 77 SHEET 4 AA2 6 ASP D 20 GLU D 24 -1 O PHE D 23 N ILE C 21 SHEET 5 AA2 6 GLU D 71 ALA D 87 -1 O LEU D 75 N GLU D 24 SHEET 6 AA2 6 THR D 10 THR D 18 -1 N GLN D 12 O SER D 85 SHEET 1 AA3 8 GLU C 39 ALA C 52 0 SHEET 2 AA3 8 VAL C 55 SER C 67 -1 O THR C 65 N LYS C 41 SHEET 3 AA3 8 THR C 72 ALA C 87 -1 O ALA C 73 N ALA C 66 SHEET 4 AA3 8 ASP C 20 GLU C 24 -1 N SER C 22 O GLU C 77 SHEET 5 AA3 8 ASP D 20 GLU D 24 -1 O PHE D 23 N ILE C 21 SHEET 6 AA3 8 GLU D 71 ALA D 87 -1 O LEU D 75 N GLU D 24 SHEET 7 AA3 8 VAL D 55 LEU D 68 -1 N VAL D 64 O CYS D 76 SHEET 8 AA3 8 GLU D 39 ALA D 52 -1 N ASP D 43 O THR D 63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1