HEADER CELL ADHESION 10-MAY-16 5JUH TITLE CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN (RV) OF MPAFP COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIFREEZE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARINOMONAS PRIMORYENSIS; SOURCE 3 ORGANISM_TAXID: 178399; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL ADHESION, RTX, ANTIFREEZE PROTEIN, TYPE I SECRETION EXPDTA X-RAY DIFFRACTION AUTHOR S.GUO REVDAT 5 06-MAR-24 5JUH 1 LINK REVDAT 4 08-JAN-20 5JUH 1 REMARK REVDAT 3 20-SEP-17 5JUH 1 REMARK REVDAT 2 06-SEP-17 5JUH 1 JRNL REVDAT 1 19-JUL-17 5JUH 0 JRNL AUTH S.GUO,C.A.STEVENS,T.D.R.VANCE,L.L.C.OLIJVE,L.A.GRAHAM, JRNL AUTH 2 R.L.CAMPBELL,S.R.YAZDI,C.ESCOBEDO,M.BAR-DOLEV,V.YASHUNSKY, JRNL AUTH 3 I.BRASLAVSKY,D.N.LANGELAAN,S.P.SMITH,J.S.ALLINGHAM, JRNL AUTH 4 I.K.VOETS,P.L.DAVIES JRNL TITL STRUCTURE OF A 1.5-MDA ADHESIN THAT BINDS ITS ANTARCTIC JRNL TITL 2 BACTERIUM TO DIATOMS AND ICE. JRNL REF SCI ADV V. 3 01440 2017 JRNL REFN ESSN 2375-2548 JRNL PMID 28808685 JRNL DOI 10.1126/SCIADV.1701440 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 23810 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.128 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1254 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1127 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 60.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3830 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1001 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.11000 REMARK 3 B22 (A**2) : -0.96000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.057 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.045 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.703 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.982 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1036 ; 0.029 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 945 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1421 ; 2.357 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2186 ; 1.207 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 144 ; 6.879 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 50 ;41.300 ;28.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 160 ;13.947 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 177 ; 0.180 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1244 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 206 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 558 ; 2.277 ; 1.505 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 557 ; 2.241 ; 1.503 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 699 ; 2.789 ; 2.269 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 700 ; 2.788 ; 2.270 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 478 ; 3.620 ; 1.766 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 478 ; 3.614 ; 1.767 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 719 ; 4.180 ; 2.541 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4840 ; 4.899 ;16.075 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4591 ; 4.183 ;15.126 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1981 ; 4.908 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 13 ;32.917 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2164 ;11.841 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JUH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27687 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.230 REMARK 200 RESOLUTION RANGE LOW (A) : 43.350 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 12.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CALCIUM CHLORIDE, SODIUM ACETATE, PEG REMARK 280 400, PH 4.6, MICROBATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.48000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.42000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.67000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.42000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.48000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.67000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -45 REMARK 465 ALA A -44 REMARK 465 SER A -43 REMARK 465 SER A -42 REMARK 465 HIS A -41 REMARK 465 HIS A -40 REMARK 465 HIS A -39 REMARK 465 HIS A -38 REMARK 465 HIS A -37 REMARK 465 HIS A -36 REMARK 465 SER A -35 REMARK 465 SER A -34 REMARK 465 GLY A -33 REMARK 465 LEU A -32 REMARK 465 VAL A -31 REMARK 465 PRO A -30 REMARK 465 ARG A -29 REMARK 465 GLY A -28 REMARK 465 SER A -27 REMARK 465 HIS A -26 REMARK 465 MET A -25 REMARK 465 LEU A -24 REMARK 465 ILE A -23 REMARK 465 SER A -22 REMARK 465 ASP A -21 REMARK 465 VAL A -20 REMARK 465 ALA A -19 REMARK 465 LEU A -18 REMARK 465 THR A -17 REMARK 465 ASN A -16 REMARK 465 LEU A -15 REMARK 465 GLU A -14 REMARK 465 ILE A -13 REMARK 465 THR A -12 REMARK 465 THR A -11 REMARK 465 SER A -10 REMARK 465 VAL A -9 REMARK 465 ASN A -8 REMARK 465 ALA A -7 REMARK 465 ILE A -6 REMARK 465 VAL A -5 REMARK 465 GLU A -4 REMARK 465 ALA A -3 REMARK 465 GLU A -2 REMARK 465 VAL A -1 REMARK 465 SER A 0 REMARK 465 ASP A 1 REMARK 465 LEU A 2 REMARK 465 TYR A 3 REMARK 465 LEU A 4 REMARK 465 ASP A 5 REMARK 465 GLY A 6 REMARK 465 THR A 7 REMARK 465 GLY A 8 REMARK 465 VAL A 9 REMARK 465 VAL A 10 REMARK 465 GLY A 11 REMARK 465 ASP A 12 REMARK 465 LEU A 13 REMARK 465 VAL A 14 REMARK 465 ASP A 15 REMARK 465 SER A 16 REMARK 465 GLN A 17 REMARK 465 THR A 18 REMARK 465 VAL A 19 REMARK 465 ASP A 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 308 O HOH A 336 2.10 REMARK 500 O HOH A 444 O HOH A 451 2.15 REMARK 500 O HOH A 331 O HOH A 433 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 365 O HOH A 402 1655 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 46 CD GLU A 46 OE1 0.102 REMARK 500 GLU A 46 CD GLU A 46 OE2 -0.068 REMARK 500 GLN A 99 CB GLN A 99 CG -0.194 REMARK 500 GLU A 149 CD GLU A 149 OE1 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 22 CB - CG - CD2 ANGL. DEV. = 14.9 DEGREES REMARK 500 LEU A 31 CB - CG - CD1 ANGL. DEV. = 11.1 DEGREES REMARK 500 ASP A 73 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP A 129 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = -7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 36 -164.81 -125.83 REMARK 500 LEU A 45 -159.09 63.24 REMARK 500 ASP A 67 46.88 -144.87 REMARK 500 GLU A 72 -50.95 -137.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 479 DISTANCE = 5.87 ANGSTROMS REMARK 525 HOH A 480 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH A 481 DISTANCE = 6.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 207 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 25 O REMARK 620 2 GLY A 27 O 92.8 REMARK 620 3 ASP A 29 OD2 82.7 83.6 REMARK 620 4 GLY A 44 O 84.8 176.8 94.0 REMARK 620 5 GLU A 46 O 83.3 83.2 160.3 98.6 REMARK 620 6 ASP A 49 OD1 162.7 82.0 80.3 99.7 112.2 REMARK 620 7 ASP A 49 OD2 146.8 114.4 117.4 68.6 81.5 47.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 33 O REMARK 620 2 ASP A 36 OD2 84.8 REMARK 620 3 ASP A 40 OD1 104.8 119.1 REMARK 620 4 ASP A 40 OD2 85.0 71.8 50.2 REMARK 620 5 HOH A 416 O 82.1 162.6 75.5 118.0 REMARK 620 6 HOH A 424 O 90.0 84.8 152.5 156.4 83.9 REMARK 620 7 HOH A 439 O 171.0 94.4 83.5 103.3 96.8 81.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 36 OD1 REMARK 620 2 ASP A 36 OD2 53.2 REMARK 620 3 LEU A 38 O 90.4 87.3 REMARK 620 4 ASP A 40 OD2 119.2 66.8 96.0 REMARK 620 5 ASP A 63 OD1 155.0 151.8 91.6 85.3 REMARK 620 6 HOH A 340 O 85.1 91.3 175.3 87.5 91.8 REMARK 620 7 HOH A 349 O 78.5 130.7 83.6 162.3 77.0 94.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 45 O REMARK 620 2 GLY A 47 O 106.1 REMARK 620 3 ASP A 49 OD2 86.4 86.7 REMARK 620 4 ASP A 73 OD1 168.6 84.8 90.8 REMARK 620 5 HOH A 330 O 83.5 170.4 93.1 85.6 REMARK 620 6 HOH A 436 O 86.4 88.0 169.6 97.7 93.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 208 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 46 OE1 REMARK 620 2 GLU A 46 OE2 53.0 REMARK 620 3 GLU A 72 OE1 84.9 134.0 REMARK 620 4 GLU A 72 OE2 137.8 166.4 53.5 REMARK 620 5 ASP A 134 OD1 176.1 125.9 94.7 42.5 REMARK 620 6 ASP A 134 OD2 173.3 131.9 88.8 36.5 6.1 REMARK 620 7 HOH A 429 O 137.1 86.0 125.8 81.2 40.8 46.4 REMARK 620 8 HOH A 436 O 84.2 82.0 75.4 90.6 92.0 91.9 77.3 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 55 OD1 REMARK 620 2 THR A 56 O 89.1 REMARK 620 3 HOH A 331 O 101.7 70.4 REMARK 620 4 HOH A 421 O 169.3 85.6 85.3 REMARK 620 5 HOH A 428 O 85.3 83.1 152.3 84.8 REMARK 620 6 HOH A 433 O 84.2 121.7 54.7 106.6 152.8 REMARK 620 7 HOH A 447 O 102.9 159.0 122.4 79.6 80.9 77.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 205 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 90 O REMARK 620 2 HOH A 351 O 72.9 REMARK 620 3 HOH A 382 O 76.1 141.9 REMARK 620 4 HOH A 430 O 135.2 66.3 148.6 REMARK 620 5 HOH A 440 O 89.5 108.7 92.6 86.6 REMARK 620 6 HOH A 442 O 92.8 80.3 79.5 97.8 171.0 REMARK 620 7 HOH A 471 O 151.3 132.4 75.2 73.5 92.8 80.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 129 OD1 REMARK 620 2 ASN A 131 OD1 83.5 REMARK 620 3 VAL A 133 O 95.2 82.7 REMARK 620 4 GLY A 135 O 82.2 160.1 84.9 REMARK 620 5 ASP A 140 OD1 83.0 74.5 157.1 117.2 REMARK 620 6 ASP A 140 OD2 111.2 121.1 145.3 77.3 53.1 REMARK 620 7 HOH A 361 O 170.3 86.9 82.1 106.8 95.9 75.1 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 208 DBREF 5JUH A -24 157 UNP A1YIY3 A1YIY3_9GAMM 1386 1567 SEQADV 5JUH MET A -45 UNP A1YIY3 INITIATING METHIONINE SEQADV 5JUH ALA A -44 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH SER A -43 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH SER A -42 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH HIS A -41 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH HIS A -40 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH HIS A -39 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH HIS A -38 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH HIS A -37 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH HIS A -36 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH SER A -35 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH SER A -34 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH GLY A -33 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH LEU A -32 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH VAL A -31 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH PRO A -30 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH ARG A -29 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH GLY A -28 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH SER A -27 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH HIS A -26 UNP A1YIY3 EXPRESSION TAG SEQADV 5JUH MET A -25 UNP A1YIY3 EXPRESSION TAG SEQRES 1 A 203 MET ALA SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 203 LEU VAL PRO ARG GLY SER HIS MET LEU ILE SER ASP VAL SEQRES 3 A 203 ALA LEU THR ASN LEU GLU ILE THR THR SER VAL ASN ALA SEQRES 4 A 203 ILE VAL GLU ALA GLU VAL SER ASP LEU TYR LEU ASP GLY SEQRES 5 A 203 THR GLY VAL VAL GLY ASP LEU VAL ASP SER GLN THR VAL SEQRES 6 A 203 ASP THR LEU ILE GLY GLY GLN GLY ASP ASP VAL LEU PHE SEQRES 7 A 203 GLY GLY ASP ASP SER LEU VAL ASP THR LEU THR GLY LEU SEQRES 8 A 203 GLU GLY SER ASP ILE PHE ILE LEU ASN ASP THR THR ASP SEQRES 9 A 203 VAL LEU ASN ILE ASP THR ILE THR ASP PHE ASN ALA ALA SEQRES 10 A 203 GLU ASP ALA LEU ASP LEU THR ASP LEU LEU THR GLY ILE SEQRES 11 A 203 ALA GLY SER PRO GLY LYS ASP ALA ASP VAL ASP ALA VAL SEQRES 12 A 203 THR GLN PHE LEU THR GLU ASN VAL LYS VAL THR ASP GLY SEQRES 13 A 203 HIS VAL LYS VAL GLY GLY GLU ASP VAL ALA ASN PHE GLY SEQRES 14 A 203 SER ASP SER ASN PHE ASP SER ASN GLY VAL ASP GLY VAL SEQRES 15 A 203 THR THR ALA ASP SER ILE LYS VAL ILE TYR ASN ASN GLU SEQRES 16 A 203 GLU TYR SER ILE ASN ILE ASP GLY HET CA A 201 1 HET CA A 202 1 HET CA A 203 1 HET CA A 204 1 HET CA A 205 1 HET CA A 206 1 HET CA A 207 1 HET CA A 208 1 HETNAM CA CALCIUM ION FORMUL 2 CA 8(CA 2+) FORMUL 10 HOH *181(H2 O) HELIX 1 AA1 ASP A 58 ILE A 62 5 5 HELIX 2 AA2 LEU A 77 THR A 82 1 6 HELIX 3 AA3 ASP A 93 ASN A 104 1 12 SHEET 1 AA1 4 LEU A 22 ILE A 23 0 SHEET 2 AA1 4 THR A 41 THR A 43 1 O THR A 41 N LEU A 22 SHEET 3 AA1 4 THR A 64 ILE A 65 1 O THR A 64 N LEU A 42 SHEET 4 AA1 4 ASN A 121 PHE A 122 1 O ASN A 121 N ILE A 65 SHEET 1 AA2 5 VAL A 30 PHE A 32 0 SHEET 2 AA2 5 ILE A 50 ILE A 52 1 O ILE A 52 N LEU A 31 SHEET 3 AA2 5 ALA A 74 ASP A 76 1 O ASP A 76 N PHE A 51 SHEET 4 AA2 5 SER A 141 TYR A 146 1 O ILE A 145 N LEU A 75 SHEET 5 AA2 5 GLU A 149 ASN A 154 -1 O ILE A 153 N ILE A 142 SHEET 1 AA3 3 VAL A 105 THR A 108 0 SHEET 2 AA3 3 HIS A 111 VAL A 114 -1 O HIS A 111 N THR A 108 SHEET 3 AA3 3 GLU A 117 ASP A 118 -1 O GLU A 117 N VAL A 114 LINK O GLY A 25 CA CA A 207 1555 1555 2.32 LINK O GLY A 27 CA CA A 207 1555 1555 2.35 LINK OD2 ASP A 29 CA CA A 207 1555 1555 2.36 LINK O GLY A 33 CA CA A 203 1555 1555 2.30 LINK OD2 ASP A 36 CA CA A 203 1555 1555 2.22 LINK OD1 ASP A 36 CA CA A 204 1555 1555 2.45 LINK OD2 ASP A 36 CA CA A 204 1555 1555 2.64 LINK O LEU A 38 CA CA A 204 1555 1555 2.31 LINK OD1 ASP A 40 CA CA A 203 1555 1555 2.50 LINK OD2 ASP A 40 CA CA A 203 1555 1555 2.48 LINK OD2 ASP A 40 CA CA A 204 1555 1555 2.37 LINK O GLY A 44 CA CA A 207 1555 1555 2.34 LINK O LEU A 45 CA CA A 206 1555 1555 2.33 LINK O GLU A 46 CA CA A 207 1555 1555 2.26 LINK OE1 GLU A 46 CA CA A 208 1555 1555 2.34 LINK OE2 GLU A 46 CA CA A 208 1555 1555 2.52 LINK O GLY A 47 CA CA A 206 1555 1555 2.35 LINK OD2 ASP A 49 CA CA A 206 1555 1555 2.29 LINK OD1 ASP A 49 CA CA A 207 1555 1555 2.36 LINK OD2 ASP A 49 CA CA A 207 1555 1555 2.83 LINK OD1 ASP A 55 CA CA A 202 1555 1555 2.33 LINK O THR A 56 CA CA A 202 1555 1555 2.26 LINK OD1 ASP A 63 CA CA A 204 1555 1555 2.36 LINK OE1 GLU A 72 CA CA A 208 1555 1555 2.57 LINK OE2 GLU A 72 CA CA A 208 1555 1555 2.43 LINK OD1 ASP A 73 CA CA A 206 1555 1555 2.37 LINK O LYS A 90 CA CA A 205 1555 1555 2.31 LINK OD1 ASP A 129 CA CA A 201 1555 1555 2.16 LINK OD1 ASN A 131 CA CA A 201 1555 1555 2.41 LINK O VAL A 133 CA CA A 201 1555 1555 2.28 LINK OD1 ASP A 134 CA CA A 208 1555 4545 2.64 LINK OD2 ASP A 134 CA CA A 208 1555 4545 2.28 LINK O GLY A 135 CA CA A 201 1555 1555 2.28 LINK OD1 ASP A 140 CA CA A 201 1555 1555 2.43 LINK OD2 ASP A 140 CA CA A 201 1555 1555 2.42 LINK CA CA A 201 O HOH A 361 1555 1555 2.45 LINK CA CA A 202 O HOH A 331 1555 1555 2.36 LINK CA CA A 202 O HOH A 421 1555 1555 2.20 LINK CA CA A 202 O HOH A 428 1555 1555 2.40 LINK CA CA A 202 O HOH A 433 1555 1555 2.41 LINK CA CA A 202 O HOH A 447 1555 1555 2.26 LINK CA CA A 203 O HOH A 416 1555 1555 2.37 LINK CA CA A 203 O HOH A 424 1555 1555 2.33 LINK CA CA A 203 O HOH A 439 1555 1555 2.37 LINK CA CA A 204 O HOH A 340 1555 1555 2.35 LINK CA CA A 204 O HOH A 349 1555 1555 2.46 LINK CA CA A 205 O HOH A 351 1555 4555 2.43 LINK CA CA A 205 O HOH A 382 1555 1555 2.43 LINK CA CA A 205 O HOH A 430 1555 4555 2.55 LINK CA CA A 205 O HOH A 440 1555 1555 2.31 LINK CA CA A 205 O HOH A 442 1555 1555 2.41 LINK CA CA A 205 O HOH A 471 1555 1555 2.47 LINK CA CA A 206 O HOH A 330 1555 1555 2.38 LINK CA CA A 206 O AHOH A 436 1555 1555 2.38 LINK CA CA A 208 O HOH A 429 1555 1555 2.35 LINK CA CA A 208 O BHOH A 436 1555 1555 2.50 SITE 1 AC1 6 ASP A 129 ASN A 131 VAL A 133 GLY A 135 SITE 2 AC1 6 ASP A 140 HOH A 361 SITE 1 AC2 7 ASP A 55 THR A 56 HOH A 331 HOH A 421 SITE 2 AC2 7 HOH A 428 HOH A 433 HOH A 447 SITE 1 AC3 6 GLY A 33 ASP A 36 ASP A 40 HOH A 416 SITE 2 AC3 6 HOH A 424 HOH A 439 SITE 1 AC4 6 ASP A 36 LEU A 38 ASP A 40 ASP A 63 SITE 2 AC4 6 HOH A 340 HOH A 349 SITE 1 AC5 7 LYS A 90 HOH A 351 HOH A 382 HOH A 430 SITE 2 AC5 7 HOH A 440 HOH A 442 HOH A 471 SITE 1 AC6 6 LEU A 45 GLY A 47 ASP A 49 ASP A 73 SITE 2 AC6 6 HOH A 330 HOH A 436 SITE 1 AC7 6 GLY A 25 GLY A 27 ASP A 29 GLY A 44 SITE 2 AC7 6 GLU A 46 ASP A 49 SITE 1 AC8 5 GLU A 46 GLU A 72 ASP A 134 HOH A 429 SITE 2 AC8 5 HOH A 436 CRYST1 34.960 43.340 78.840 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028604 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023073 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012684 0.00000