HEADER TRANSCRIPTION/DNA 11-MAY-16 5JVT TITLE CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF TRANSCRIPTION FACTOR TITLE 2 FLI1 IN COMPLEX WITH AN 11-MER DNA GACCGGAAGTG COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRIEND LEUKEMIA INTEGRATION 1 TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A, D, G; COMPND 4 SYNONYM: PROTO-ONCOGENE FLI-1,TRANSCRIPTION FACTOR ERGB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*G)-3'); COMPND 8 CHAIN: B, E, H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP*C)-3'); COMPND 12 CHAIN: C, F, I; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FLI1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-RIL; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: ENDOTHIA GYROSA; SOURCE 12 ORGANISM_TAXID: 40263; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: ENDOTHIA GYROSA; SOURCE 16 ORGANISM_TAXID: 40263 KEYWDS TRANSCRIPTION, DNA BINDING, CANCER, EWING SARCOMA, TRANSCRIPTION-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.HOU,O.V.TSODIKOV REVDAT 3 27-SEP-23 5JVT 1 JRNL REMARK REVDAT 2 26-OCT-16 5JVT 1 JRNL REVDAT 1 14-SEP-16 5JVT 0 JRNL AUTH C.HOU,S.WEIDENBACH,K.E.CANO,Z.WANG,P.MITRA,D.N.IVANOV, JRNL AUTH 2 J.ROHR,O.V.TSODIKOV JRNL TITL STRUCTURES OF MITHRAMYCIN ANALOGUES BOUND TO DNA AND JRNL TITL 2 IMPLICATIONS FOR TARGETING TRANSCRIPTION FACTOR FLI1. JRNL REF NUCLEIC ACIDS RES. V. 44 8990 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27587584 JRNL DOI 10.1093/NAR/GKW761 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 885 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1203 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2334 REMARK 3 NUCLEIC ACID ATOMS : 1330 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92000 REMARK 3 B22 (A**2) : -0.92000 REMARK 3 B33 (A**2) : 3.00000 REMARK 3 B12 (A**2) : -0.46000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.814 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.350 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.323 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3894 ; 0.007 ; 0.016 REMARK 3 BOND LENGTHS OTHERS (A): 2963 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5529 ; 1.128 ; 1.616 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6849 ; 1.141 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 279 ; 5.905 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 126 ;36.536 ;23.492 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 421 ;16.548 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;18.456 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 518 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3510 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 951 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1125 ; 1.270 ; 4.960 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1124 ; 1.270 ; 4.957 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1401 ; 2.292 ; 7.426 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1402 ; 2.292 ; 7.430 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2768 ; 1.023 ; 4.513 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2764 ; 0.992 ; 4.501 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4123 ; 1.808 ; 6.714 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4903 ; 3.719 ;40.388 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4903 ; 3.714 ;40.389 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 279 A 374 REMARK 3 ORIGIN FOR THE GROUP (A): 139.3270 66.1420 7.5660 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.5065 REMARK 3 T33: 0.4116 T12: -0.0321 REMARK 3 T13: -0.2346 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 4.5865 L22: 5.5972 REMARK 3 L33: 3.1981 L12: -0.8420 REMARK 3 L13: -0.1346 L23: -0.1369 REMARK 3 S TENSOR REMARK 3 S11: 0.3624 S12: 0.2013 S13: -0.5038 REMARK 3 S21: 0.2154 S22: 0.1539 S23: 0.3642 REMARK 3 S31: 0.0723 S32: 0.6572 S33: -0.5163 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 11 REMARK 3 ORIGIN FOR THE GROUP (A): 145.1590 56.8030 -4.4140 REMARK 3 T TENSOR REMARK 3 T11: 0.3164 T22: 0.8184 REMARK 3 T33: 0.9040 T12: 0.2778 REMARK 3 T13: -0.3515 T23: -0.2561 REMARK 3 L TENSOR REMARK 3 L11: 5.4364 L22: 6.5891 REMARK 3 L33: 10.7543 L12: 3.1572 REMARK 3 L13: -0.3400 L23: 3.8215 REMARK 3 S TENSOR REMARK 3 S11: 0.2049 S12: 0.7109 S13: -0.8746 REMARK 3 S21: -0.2743 S22: 0.1963 S23: 0.5226 REMARK 3 S31: 0.0261 S32: 0.6150 S33: -0.4012 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 14 C 24 REMARK 3 ORIGIN FOR THE GROUP (A): 146.7750 56.7680 -3.5880 REMARK 3 T TENSOR REMARK 3 T11: 0.5550 T22: 1.2108 REMARK 3 T33: 0.9873 T12: 0.3264 REMARK 3 T13: -0.4786 T23: -0.4938 REMARK 3 L TENSOR REMARK 3 L11: 4.0038 L22: 5.1201 REMARK 3 L33: 2.7753 L12: 0.7948 REMARK 3 L13: -3.0194 L23: -0.7296 REMARK 3 S TENSOR REMARK 3 S11: 0.5394 S12: 0.3409 S13: -0.8977 REMARK 3 S21: -1.0210 S22: -0.6129 S23: 0.2829 REMARK 3 S31: -0.2086 S32: 0.3046 S33: 0.0734 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 279 D 371 REMARK 3 ORIGIN FOR THE GROUP (A): 177.3180 74.6360 11.0270 REMARK 3 T TENSOR REMARK 3 T11: 0.4673 T22: 0.7941 REMARK 3 T33: 0.6467 T12: 0.3115 REMARK 3 T13: 0.2284 T23: -0.0613 REMARK 3 L TENSOR REMARK 3 L11: 2.6142 L22: 7.8183 REMARK 3 L33: 2.7881 L12: 0.4614 REMARK 3 L13: 1.6770 L23: 1.1323 REMARK 3 S TENSOR REMARK 3 S11: 0.5395 S12: 0.4356 S13: -0.1740 REMARK 3 S21: -0.4512 S22: 0.0626 S23: -0.5106 REMARK 3 S31: -0.4007 S32: -0.0013 S33: -0.6021 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 1 E 11 REMARK 3 ORIGIN FOR THE GROUP (A): 177.5960 58.5550 13.2460 REMARK 3 T TENSOR REMARK 3 T11: 0.1843 T22: 0.8078 REMARK 3 T33: 0.9146 T12: 0.1072 REMARK 3 T13: -0.3686 T23: -0.2411 REMARK 3 L TENSOR REMARK 3 L11: 8.5268 L22: 4.9247 REMARK 3 L33: 5.3070 L12: 1.1174 REMARK 3 L13: -0.2481 L23: -2.3709 REMARK 3 S TENSOR REMARK 3 S11: 0.6921 S12: 0.0183 S13: -1.3383 REMARK 3 S21: -0.1956 S22: 0.1730 S23: -0.2679 REMARK 3 S31: 0.3042 S32: -0.2742 S33: -0.8651 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F 14 F 24 REMARK 3 ORIGIN FOR THE GROUP (A): 176.4410 58.5000 12.2730 REMARK 3 T TENSOR REMARK 3 T11: 0.2877 T22: 0.9353 REMARK 3 T33: 1.4442 T12: 0.1420 REMARK 3 T13: -0.5090 T23: -0.1497 REMARK 3 L TENSOR REMARK 3 L11: 9.8734 L22: 8.5811 REMARK 3 L33: 2.8882 L12: -1.3907 REMARK 3 L13: -4.5379 L23: 0.3904 REMARK 3 S TENSOR REMARK 3 S11: 0.4782 S12: 1.0679 S13: -1.2299 REMARK 3 S21: -0.5993 S22: -0.0238 S23: -0.6371 REMARK 3 S31: 0.1597 S32: -0.4168 S33: -0.4544 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : G 279 G 371 REMARK 3 ORIGIN FOR THE GROUP (A): 175.4770 92.6670 28.8560 REMARK 3 T TENSOR REMARK 3 T11: 0.3168 T22: 0.4547 REMARK 3 T33: 0.9329 T12: 0.0707 REMARK 3 T13: 0.4170 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 4.3976 L22: 6.3239 REMARK 3 L33: 6.2288 L12: -1.9626 REMARK 3 L13: -1.0471 L23: 2.2202 REMARK 3 S TENSOR REMARK 3 S11: 0.8032 S12: 0.1369 S13: 0.2735 REMARK 3 S21: -0.4041 S22: 0.1013 S23: -0.7700 REMARK 3 S31: -0.2714 S32: 0.0906 S33: -0.9045 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 11 REMARK 3 ORIGIN FOR THE GROUP (A): 175.8770 108.8580 27.3370 REMARK 3 T TENSOR REMARK 3 T11: 0.5997 T22: 0.5497 REMARK 3 T33: 1.0946 T12: 0.1408 REMARK 3 T13: 0.7290 T23: 0.0541 REMARK 3 L TENSOR REMARK 3 L11: 7.5974 L22: 5.5159 REMARK 3 L33: 5.3935 L12: -0.6654 REMARK 3 L13: 0.2830 L23: -0.4878 REMARK 3 S TENSOR REMARK 3 S11: 0.3587 S12: 0.4297 S13: 1.0871 REMARK 3 S21: -0.3070 S22: 0.0340 S23: -0.2419 REMARK 3 S31: -0.4329 S32: 0.1041 S33: -0.3928 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 14 I 24 REMARK 3 ORIGIN FOR THE GROUP (A): 174.7130 109.0170 28.2540 REMARK 3 T TENSOR REMARK 3 T11: 0.7285 T22: 0.5823 REMARK 3 T33: 1.2545 T12: -0.0654 REMARK 3 T13: 0.6451 T23: -0.0816 REMARK 3 L TENSOR REMARK 3 L11: 8.6278 L22: 5.3642 REMARK 3 L33: 3.7814 L12: -1.9859 REMARK 3 L13: 0.5176 L23: -2.3570 REMARK 3 S TENSOR REMARK 3 S11: 0.3780 S12: -0.3085 S13: 0.8822 REMARK 3 S21: -0.8003 S22: 0.2300 S23: -0.5865 REMARK 3 S31: -0.5550 S32: -0.0013 S33: -0.6080 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221278. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300-HS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17757 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5E8I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULPHATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 29.18533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 58.37067 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.77800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 72.96333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 14.59267 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 29.18533 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 58.37067 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 72.96333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 43.77800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 14.59267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 272 REMARK 465 PRO A 273 REMARK 465 HIS A 274 REMARK 465 MET A 275 REMARK 465 PRO A 276 REMARK 465 GLY A 277 REMARK 465 SER A 278 REMARK 465 GLU A 375 REMARK 465 GLY D 272 REMARK 465 PRO D 273 REMARK 465 HIS D 274 REMARK 465 MET D 275 REMARK 465 PRO D 276 REMARK 465 GLY D 277 REMARK 465 SER D 278 REMARK 465 HIS D 372 REMARK 465 PRO D 373 REMARK 465 THR D 374 REMARK 465 GLU D 375 REMARK 465 GLY G 272 REMARK 465 PRO G 273 REMARK 465 HIS G 274 REMARK 465 MET G 275 REMARK 465 PRO G 276 REMARK 465 GLY G 277 REMARK 465 SER G 278 REMARK 465 HIS G 372 REMARK 465 PRO G 373 REMARK 465 THR G 374 REMARK 465 GLU G 375 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 303 CD OE1 OE2 REMARK 470 LYS A 354 CD CE NZ REMARK 470 DC C 14 O5' REMARK 470 DG E 1 O5' REMARK 470 DC F 14 O5' REMARK 470 DG H 1 O5' REMARK 470 DC I 14 O5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 280 -14.70 75.76 REMARK 500 GLU A 303 100.92 -161.81 REMARK 500 SER A 326 71.98 46.31 REMARK 500 LYS A 327 68.43 -156.94 REMARK 500 GLN D 280 -9.85 70.48 REMARK 500 GLU D 303 103.11 -161.50 REMARK 500 ASN D 306 108.62 -47.36 REMARK 500 GLU G 303 119.52 -167.96 REMARK 500 ASN G 329 30.03 -98.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL G 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JW2 RELATED DB: PDB REMARK 900 RELATED ID: 5JW0 RELATED DB: PDB REMARK 900 RELATED ID: 5JVW RELATED DB: PDB DBREF 5JVT A 276 375 UNP Q01543 FLI1_HUMAN 276 375 DBREF 5JVT B 1 11 PDB 5JVT 5JVT 1 11 DBREF 5JVT C 14 24 PDB 5JVT 5JVT 14 24 DBREF 5JVT D 276 375 UNP Q01543 FLI1_HUMAN 276 375 DBREF 5JVT E 1 11 PDB 5JVT 5JVT 1 11 DBREF 5JVT F 14 24 PDB 5JVT 5JVT 14 24 DBREF 5JVT G 276 375 UNP Q01543 FLI1_HUMAN 276 375 DBREF 5JVT H 1 11 PDB 5JVT 5JVT 1 11 DBREF 5JVT I 14 24 PDB 5JVT 5JVT 14 24 SEQADV 5JVT GLY A 272 UNP Q01543 EXPRESSION TAG SEQADV 5JVT PRO A 273 UNP Q01543 EXPRESSION TAG SEQADV 5JVT HIS A 274 UNP Q01543 EXPRESSION TAG SEQADV 5JVT MET A 275 UNP Q01543 EXPRESSION TAG SEQADV 5JVT GLY D 272 UNP Q01543 EXPRESSION TAG SEQADV 5JVT PRO D 273 UNP Q01543 EXPRESSION TAG SEQADV 5JVT HIS D 274 UNP Q01543 EXPRESSION TAG SEQADV 5JVT MET D 275 UNP Q01543 EXPRESSION TAG SEQADV 5JVT GLY G 272 UNP Q01543 EXPRESSION TAG SEQADV 5JVT PRO G 273 UNP Q01543 EXPRESSION TAG SEQADV 5JVT HIS G 274 UNP Q01543 EXPRESSION TAG SEQADV 5JVT MET G 275 UNP Q01543 EXPRESSION TAG SEQRES 1 A 104 GLY PRO HIS MET PRO GLY SER GLY GLN ILE GLN LEU TRP SEQRES 2 A 104 GLN PHE LEU LEU GLU LEU LEU SER ASP SER ALA ASN ALA SEQRES 3 A 104 SER CYS ILE THR TRP GLU GLY THR ASN GLY GLU PHE LYS SEQRES 4 A 104 MET THR ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY GLU SEQRES 5 A 104 ARG LYS SER LYS PRO ASN MET ASN TYR ASP LYS LEU SER SEQRES 6 A 104 ARG ALA LEU ARG TYR TYR TYR ASP LYS ASN ILE MET THR SEQRES 7 A 104 LYS VAL HIS GLY LYS ARG TYR ALA TYR LYS PHE ASP PHE SEQRES 8 A 104 HIS GLY ILE ALA GLN ALA LEU GLN PRO HIS PRO THR GLU SEQRES 1 B 11 DG DA DC DC DG DG DA DA DG DT DG SEQRES 1 C 11 DC DA DC DT DT DC DC DG DG DT DC SEQRES 1 D 104 GLY PRO HIS MET PRO GLY SER GLY GLN ILE GLN LEU TRP SEQRES 2 D 104 GLN PHE LEU LEU GLU LEU LEU SER ASP SER ALA ASN ALA SEQRES 3 D 104 SER CYS ILE THR TRP GLU GLY THR ASN GLY GLU PHE LYS SEQRES 4 D 104 MET THR ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY GLU SEQRES 5 D 104 ARG LYS SER LYS PRO ASN MET ASN TYR ASP LYS LEU SER SEQRES 6 D 104 ARG ALA LEU ARG TYR TYR TYR ASP LYS ASN ILE MET THR SEQRES 7 D 104 LYS VAL HIS GLY LYS ARG TYR ALA TYR LYS PHE ASP PHE SEQRES 8 D 104 HIS GLY ILE ALA GLN ALA LEU GLN PRO HIS PRO THR GLU SEQRES 1 E 11 DG DA DC DC DG DG DA DA DG DT DG SEQRES 1 F 11 DC DA DC DT DT DC DC DG DG DT DC SEQRES 1 G 104 GLY PRO HIS MET PRO GLY SER GLY GLN ILE GLN LEU TRP SEQRES 2 G 104 GLN PHE LEU LEU GLU LEU LEU SER ASP SER ALA ASN ALA SEQRES 3 G 104 SER CYS ILE THR TRP GLU GLY THR ASN GLY GLU PHE LYS SEQRES 4 G 104 MET THR ASP PRO ASP GLU VAL ALA ARG ARG TRP GLY GLU SEQRES 5 G 104 ARG LYS SER LYS PRO ASN MET ASN TYR ASP LYS LEU SER SEQRES 6 G 104 ARG ALA LEU ARG TYR TYR TYR ASP LYS ASN ILE MET THR SEQRES 7 G 104 LYS VAL HIS GLY LYS ARG TYR ALA TYR LYS PHE ASP PHE SEQRES 8 G 104 HIS GLY ILE ALA GLN ALA LEU GLN PRO HIS PRO THR GLU SEQRES 1 H 11 DG DA DC DC DG DG DA DA DG DT DG SEQRES 1 I 11 DC DA DC DT DT DC DC DG DG DT DC HET PO4 D 401 5 HET GOL G 401 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 10 PO4 O4 P 3- FORMUL 11 GOL C3 H8 O3 FORMUL 12 HOH *2(H2 O) HELIX 1 AA1 GLN A 282 ASP A 293 1 12 HELIX 2 AA2 SER A 294 ALA A 297 5 4 HELIX 3 AA3 ASP A 313 SER A 326 1 14 HELIX 4 AA4 ASN A 331 TYR A 342 1 12 HELIX 5 AA5 ASP A 361 GLN A 370 1 10 HELIX 6 AA6 GLN D 282 ASP D 293 1 12 HELIX 7 AA7 SER D 294 ALA D 297 5 4 HELIX 8 AA8 ASP D 313 LYS D 325 1 13 HELIX 9 AA9 ASN D 331 LYS D 345 1 15 HELIX 10 AB1 ASP D 361 LEU D 369 1 9 HELIX 11 AB2 GLN G 282 SER G 292 1 11 HELIX 12 AB3 ASP G 293 CYS G 299 5 7 HELIX 13 AB4 ASP G 313 LYS G 325 1 13 HELIX 14 AB5 ASN G 331 TYR G 342 1 12 HELIX 15 AB6 ASP G 361 LEU G 369 1 9 SHEET 1 AA1 4 THR A 301 TRP A 302 0 SHEET 2 AA1 4 GLU A 308 LYS A 310 -1 O LYS A 310 N THR A 301 SHEET 3 AA1 4 ALA A 357 PHE A 360 -1 O TYR A 358 N PHE A 309 SHEET 4 AA1 4 MET A 348 LYS A 350 -1 N THR A 349 O LYS A 359 SHEET 1 AA2 4 THR D 301 TRP D 302 0 SHEET 2 AA2 4 GLU D 308 LYS D 310 -1 O LYS D 310 N THR D 301 SHEET 3 AA2 4 ALA D 357 PHE D 360 -1 O TYR D 358 N PHE D 309 SHEET 4 AA2 4 MET D 348 LYS D 350 -1 N THR D 349 O LYS D 359 SHEET 1 AA3 4 THR G 301 TRP G 302 0 SHEET 2 AA3 4 GLU G 308 LYS G 310 -1 O LYS G 310 N THR G 301 SHEET 3 AA3 4 ALA G 357 PHE G 360 -1 O TYR G 358 N PHE G 309 SHEET 4 AA3 4 MET G 348 LYS G 350 -1 N THR G 349 O LYS G 359 SITE 1 AC1 3 LYS D 310 LYS D 354 ARG D 355 SITE 1 AC2 1 SER A 294 CRYST1 191.845 191.845 87.556 90.00 90.00 120.00 P 61 2 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005213 0.003009 0.000000 0.00000 SCALE2 0.000000 0.006019 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011421 0.00000