data_5JW0 # _entry.id 5JW0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5JW0 pdb_00005jw0 10.2210/pdb5jw0/pdb WWPDB D_1000221309 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-09-14 2 'Structure model' 1 1 2016-10-26 3 'Structure model' 1 2 2024-03-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp 2 3 'Structure model' chem_comp_atom 3 3 'Structure model' chem_comp_bond 4 3 'Structure model' citation 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_struct_conn_angle 7 3 'Structure model' pdbx_struct_oper_list 8 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_chem_comp.pdbx_synonyms' 2 3 'Structure model' '_citation.journal_id_CSD' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.value' 22 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 23 3 'Structure model' '_struct_conn.pdbx_dist_value' 24 3 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 3 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5JW0 _pdbx_database_status.recvd_initial_deposition_date 2016-05-11 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 5JW2 PDB . unspecified 5JVW PDB . unspecified 5JVT PDB . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hou, C.' 1 'Rohr, J.' 2 'Tsodikov, O.V.' 3 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_id_ASTM NARHAD _citation.journal_id_CSD 0389 _citation.journal_id_ISSN 1362-4962 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 44 _citation.language ? _citation.page_first 8990 _citation.page_last 9004 _citation.title 'Structures of mithramycin analogues bound to DNA and implications for targeting transcription factor FLI1.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1093/nar/gkw761 _citation.pdbx_database_id_PubMed 27587584 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hou, C.' 1 ? primary 'Weidenbach, S.' 2 ? primary 'Cano, K.E.' 3 ? primary 'Wang, Z.' 4 ? primary 'Mitra, P.' 5 ? primary 'Ivanov, D.N.' 6 ? primary 'Rohr, J.' 7 ? primary 'Tsodikov, O.V.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(P*AP*GP*GP*GP*TP*AP*CP*CP*CP*T)-3') ; 3045.005 2 ? ? ? ? 2 non-polymer syn 'Plicamycin, mithramycin analogue MTM SA-Phe' 1188.267 4 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 6 ? ? ? ? 4 water nat water 18.015 10 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DA)(DG)(DG)(DG)(DT)(DA)(DC)(DC)(DC)(DT)' _entity_poly.pdbx_seq_one_letter_code_can AGGGTACCCT _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'Plicamycin, mithramycin analogue MTM SA-Phe' 6O7 3 'ZINC ION' ZN 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DA n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DT n 1 6 DA n 1 7 DC n 1 8 DC n 1 9 DC n 1 10 DT n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 10 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32360 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6O7 non-polymer . 'Plicamycin, mithramycin analogue MTM SA-Phe' ;methyl (2S)-2-({(2S)-2-[(2R,3S)-3-{[(2S,4R,5R,6R)-4-{[(2S,4R,5S,6R)-4-{[(2S,4S,5R,6R)-4,5-dihydroxy-4,6-dimethyltetrahydro-2H-p yran-2-yl]oxy}-5-hydroxy-6-methyltetrahydro-2H-pyran-2-yl]oxy}-5-hydroxy-6-methyltetrahydro-2H-pyran-2-yl]oxy}-7-{[(2S,4 R,5R,6R)-4-{[(2S,4R,5S,6R)-4,5-dihydroxy-6-methyltetrahydro-2H-pyran-2-yl]oxy}-5-hydroxy-6-methyltetrahydro-2H-pyran-2-y l]oxy}-5,10-dihydroxy-6-methyl-4-oxo-1,2,3,4-tetrahydroanthracen-2-yl]-2-methoxyacetyl}amino)-3-phenylpropanoate (non-preferred name) ; 'C59 H81 N O24' 1188.267 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DA 1 4 4 DA DA A . n A 1 2 DG 2 5 5 DG DG A . n A 1 3 DG 3 6 6 DG DG A . n A 1 4 DG 4 7 7 DG DG A . n A 1 5 DT 5 8 8 DT DT A . n A 1 6 DA 6 9 9 DA DA A . n A 1 7 DC 7 10 10 DC DC A . n A 1 8 DC 8 11 11 DC DC A . n A 1 9 DC 9 12 12 DC DC A . n A 1 10 DT 10 13 13 DT DT A . n B 1 1 DA 1 -2 -2 DA DA B . n B 1 2 DG 2 -1 -1 DG DG B . n B 1 3 DG 3 0 0 DG DG B . n B 1 4 DG 4 1 1 DG DG B . n B 1 5 DT 5 2 2 DT DT B . n B 1 6 DA 6 3 3 DA DA B . n B 1 7 DC 7 4 4 DC DC B . n B 1 8 DC 8 5 5 DC DC B . n B 1 9 DC 9 6 6 DC DC B . n B 1 10 DT 10 7 7 DT DT B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6O7 1 101 1 6O7 MTF A . D 2 6O7 1 102 1 6O7 MTF A . E 2 6O7 1 103 1 6O7 MTF A . F 3 ZN 1 104 6 ZN ZN A . G 3 ZN 1 105 1 ZN ZN A . H 3 ZN 1 106 2 ZN ZN A . I 3 ZN 1 107 4 ZN ZN A . J 3 ZN 1 108 5 ZN ZN A . K 2 6O7 1 101 1 6O7 MTF B . L 3 ZN 1 102 3 ZN ZN B . M 4 HOH 1 201 4 HOH HOH A . M 4 HOH 2 202 10 HOH HOH A . M 4 HOH 3 203 1 HOH HOH A . M 4 HOH 4 204 3 HOH HOH A . M 4 HOH 5 205 2 HOH HOH A . M 4 HOH 6 206 9 HOH HOH A . M 4 HOH 7 207 8 HOH HOH A . N 4 HOH 1 201 6 HOH HOH B . N 4 HOH 2 202 7 HOH HOH B . N 4 HOH 3 203 5 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0071 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5JW0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 50.564 _cell.length_a_esd ? _cell.length_b 50.564 _cell.length_b_esd ? _cell.length_c 125.243 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JW0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5JW0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 6.57 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 81.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'Incubation against against 35% v/v 2-methyl-2,4-pentanediol' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 300 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-07-14 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-D' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-D _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5JW0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.4 _reflns.d_resolution_low 50.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 6349 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.7 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.3 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 35.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high . _reflns_shell.d_res_low ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] 0.96 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 0.96 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -1.93 _refine.B_iso_max ? _refine.B_iso_mean 42.923 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.891 _refine.correlation_coeff_Fo_to_Fc_free 0.880 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5JW0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.40 _refine.ls_d_res_low 40.00 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 6349 _refine.ls_number_reflns_R_free 373 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.25 _refine.ls_percent_reflns_R_free 5.5 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.26353 _refine.ls_R_factor_R_free 0.28905 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.26190 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.309 _refine.pdbx_overall_ESU_R_Free 0.246 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 7.213 _refine.overall_SU_ML 0.170 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 407 _refine_hist.pdbx_number_atoms_ligand 342 _refine_hist.number_atoms_solvent 10 _refine_hist.number_atoms_total 759 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 40.00 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 0.015 845 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.008 0.020 517 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.745 1.978 1250 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 2.224 3.000 1233 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.063 0.200 152 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.012 0.020 392 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 138 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 0.244 3.838 1 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 3.529 4.429 845 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 3.349 4.427 836 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 4.291 6.627 1251 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 5.658 45.909 1145 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 5.654 45.911 1145 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 2.402 _refine_ls_shell.d_res_low 2.464 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.number_reflns_R_work 426 _refine_ls_shell.percent_reflns_obs 97.46 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.407 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.367 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5JW0 _struct.title 'Crystal structure of mithramycin analogue MTM SA-Phe in complex with a 10-mer DNA AGGGTACCCT' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5JW0 _struct_keywords.text 'anti-cancer agent, DNA binding, natural product, transcription factor, Ewing sarcoma, dna-antibiotic complex' _struct_keywords.pdbx_keywords dna/antibiotic # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 2 ? L N N 3 ? M N N 4 ? N N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5JW0 _struct_ref.pdbx_db_accession 5JW0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5JW0 A 1 ? 10 ? 5JW0 4 ? 13 ? 4 13 2 1 5JW0 B 1 ? 10 ? 5JW0 -2 ? 7 ? -2 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2860 ? 1 MORE -185 ? 1 'SSA (A^2)' 5680 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details '1 complex of 2 MTM SA-Phe dimers bound to one double-stranded DNA oligomer' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 N7 ? ? ? 1_555 J ZN . ZN ? ? A DG 5 A ZN 108 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc2 metalc ? ? A DG 3 N7 ? ? ? 1_555 G ZN . ZN ? ? A DG 6 A ZN 105 1_555 ? ? ? ? ? ? ? 2.074 ? ? metalc3 metalc ? ? A DA 6 N7 ? ? ? 1_555 I ZN . ZN ? ? A DA 9 A ZN 107 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc4 metalc ? ? C 6O7 . O14 ? ? ? 1_555 F ZN . ZN ? ? A 6O7 101 A ZN 104 1_555 ? ? ? ? ? ? ? 2.030 ? ? metalc5 metalc ? ? C 6O7 . O15 ? ? ? 1_555 F ZN . ZN ? ? A 6O7 101 A ZN 104 1_555 ? ? ? ? ? ? ? 1.980 ? ? metalc6 metalc ? ? D 6O7 . O14 ? ? ? 1_555 F ZN . ZN ? ? A 6O7 102 A ZN 104 1_555 ? ? ? ? ? ? ? 1.998 ? ? metalc7 metalc ? ? D 6O7 . O15 ? ? ? 1_555 F ZN . ZN ? ? A 6O7 102 A ZN 104 1_555 ? ? ? ? ? ? ? 1.950 ? ? metalc8 metalc ? ? E 6O7 . O14 ? ? ? 1_555 H ZN . ZN ? ? A 6O7 103 A ZN 106 1_555 ? ? ? ? ? ? ? 2.008 ? ? metalc9 metalc ? ? E 6O7 . O15 ? ? ? 1_555 H ZN . ZN ? ? A 6O7 103 A ZN 106 1_555 ? ? ? ? ? ? ? 1.962 ? ? metalc10 metalc ? ? F ZN . ZN ? ? ? 1_555 M HOH . O ? ? A ZN 104 A HOH 204 1_555 ? ? ? ? ? ? ? 1.967 ? ? metalc11 metalc ? ? F ZN . ZN ? ? ? 1_555 M HOH . O ? ? A ZN 104 A HOH 205 1_555 ? ? ? ? ? ? ? 2.019 ? ? metalc12 metalc ? ? G ZN . ZN ? ? ? 1_555 M HOH . O ? ? A ZN 105 A HOH 206 1_555 ? ? ? ? ? ? ? 1.996 ? ? metalc13 metalc ? ? G ZN . ZN ? ? ? 1_555 M HOH . O ? ? A ZN 105 A HOH 207 1_555 ? ? ? ? ? ? ? 1.995 ? ? metalc14 metalc ? ? H ZN . ZN ? ? ? 1_555 M HOH . O ? ? A ZN 106 A HOH 201 1_555 ? ? ? ? ? ? ? 1.992 ? ? metalc15 metalc ? ? H ZN . ZN ? ? ? 1_555 M HOH . O ? ? A ZN 106 A HOH 203 1_555 ? ? ? ? ? ? ? 1.987 ? ? metalc16 metalc ? ? H ZN . ZN ? ? ? 1_555 K 6O7 . O15 ? ? A ZN 106 B 6O7 101 1_555 ? ? ? ? ? ? ? 1.974 ? ? metalc17 metalc ? ? H ZN . ZN ? ? ? 1_555 K 6O7 . O14 ? ? A ZN 106 B 6O7 101 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc18 metalc ? ? J ZN . ZN ? ? ? 1_555 M HOH . O ? ? A ZN 108 A HOH 202 1_555 ? ? ? ? ? ? ? 1.988 ? ? metalc19 metalc ? ? B DG 3 N7 ? ? ? 1_555 L ZN . ZN ? ? B DG 0 B ZN 102 1_555 ? ? ? ? ? ? ? 2.101 ? ? metalc20 metalc ? ? L ZN . ZN ? ? ? 1_555 N HOH . O ? ? B ZN 102 B HOH 201 1_555 ? ? ? ? ? ? ? 1.977 ? ? metalc21 metalc ? ? L ZN . ZN ? ? ? 1_555 N HOH . O ? ? B ZN 102 B HOH 202 1_555 ? ? ? ? ? ? ? 1.994 ? ? metalc22 metalc ? ? L ZN . ZN ? ? ? 1_555 N HOH . O ? ? B ZN 102 B HOH 203 1_555 ? ? ? ? ? ? ? 2.017 ? ? hydrog1 hydrog ? ? A DA 1 N1 ? ? ? 1_555 B DT 10 N3 ? ? A DA 4 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DA 1 N6 ? ? ? 1_555 B DT 10 O4 ? ? A DA 4 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 5 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B DC 8 N3 ? ? A DG 6 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B DC 8 O2 ? ? A DG 6 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DC 8 N4 ? ? A DG 6 B DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 7 N3 ? ? A DG 7 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 7 O2 ? ? A DG 7 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 7 N4 ? ? A DG 7 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 8 B DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 9 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 9 B DT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 10 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 10 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 10 B DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 11 B DG 0 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 11 B DG 0 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 11 B DG 0 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 12 B DG -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 12 B DG -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 12 B DG -1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 1 N1 ? ? A DT 13 B DA -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 1 N6 ? ? A DT 13 B DA -2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 N7 ? A DG 2 ? A DG 5 ? 1_555 ZN ? J ZN . ? A ZN 108 ? 1_555 O ? M HOH . ? A HOH 202 ? 1_555 108.3 ? 2 N7 ? A DG 3 ? A DG 6 ? 1_555 ZN ? G ZN . ? A ZN 105 ? 1_555 O ? M HOH . ? A HOH 206 ? 1_555 86.2 ? 3 N7 ? A DG 3 ? A DG 6 ? 1_555 ZN ? G ZN . ? A ZN 105 ? 1_555 O ? M HOH . ? A HOH 207 ? 1_555 116.1 ? 4 O ? M HOH . ? A HOH 206 ? 1_555 ZN ? G ZN . ? A ZN 105 ? 1_555 O ? M HOH . ? A HOH 207 ? 1_555 156.5 ? 5 O14 ? C 6O7 . ? A 6O7 101 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O15 ? C 6O7 . ? A 6O7 101 ? 1_555 78.0 ? 6 O14 ? C 6O7 . ? A 6O7 101 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O14 ? D 6O7 . ? A 6O7 102 ? 1_555 73.3 ? 7 O15 ? C 6O7 . ? A 6O7 101 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O14 ? D 6O7 . ? A 6O7 102 ? 1_555 96.6 ? 8 O14 ? C 6O7 . ? A 6O7 101 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O15 ? D 6O7 . ? A 6O7 102 ? 1_555 88.4 ? 9 O15 ? C 6O7 . ? A 6O7 101 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O15 ? D 6O7 . ? A 6O7 102 ? 1_555 166.4 ? 10 O14 ? D 6O7 . ? A 6O7 102 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O15 ? D 6O7 . ? A 6O7 102 ? 1_555 80.2 ? 11 O14 ? C 6O7 . ? A 6O7 101 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O ? M HOH . ? A HOH 204 ? 1_555 92.8 ? 12 O15 ? C 6O7 . ? A 6O7 101 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O ? M HOH . ? A HOH 204 ? 1_555 80.9 ? 13 O14 ? D 6O7 . ? A 6O7 102 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O ? M HOH . ? A HOH 204 ? 1_555 166.1 ? 14 O15 ? D 6O7 . ? A 6O7 102 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O ? M HOH . ? A HOH 204 ? 1_555 99.0 ? 15 O14 ? C 6O7 . ? A 6O7 101 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O ? M HOH . ? A HOH 205 ? 1_555 157.2 ? 16 O15 ? C 6O7 . ? A 6O7 101 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O ? M HOH . ? A HOH 205 ? 1_555 84.5 ? 17 O14 ? D 6O7 . ? A 6O7 102 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O ? M HOH . ? A HOH 205 ? 1_555 94.4 ? 18 O15 ? D 6O7 . ? A 6O7 102 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O ? M HOH . ? A HOH 205 ? 1_555 108.8 ? 19 O ? M HOH . ? A HOH 204 ? 1_555 ZN ? F ZN . ? A ZN 104 ? 1_555 O ? M HOH . ? A HOH 205 ? 1_555 98.9 ? 20 O14 ? E 6O7 . ? A 6O7 103 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O15 ? E 6O7 . ? A 6O7 103 ? 1_555 86.4 ? 21 O14 ? E 6O7 . ? A 6O7 103 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O ? M HOH . ? A HOH 201 ? 1_555 107.2 ? 22 O15 ? E 6O7 . ? A 6O7 103 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O ? M HOH . ? A HOH 201 ? 1_555 99.1 ? 23 O14 ? E 6O7 . ? A 6O7 103 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O ? M HOH . ? A HOH 203 ? 1_555 155.0 ? 24 O15 ? E 6O7 . ? A 6O7 103 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O ? M HOH . ? A HOH 203 ? 1_555 75.5 ? 25 O ? M HOH . ? A HOH 201 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O ? M HOH . ? A HOH 203 ? 1_555 92.8 ? 26 O14 ? E 6O7 . ? A 6O7 103 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O15 ? K 6O7 . ? B 6O7 101 ? 1_555 94.8 ? 27 O15 ? E 6O7 . ? A 6O7 103 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O15 ? K 6O7 . ? B 6O7 101 ? 1_555 169.7 ? 28 O ? M HOH . ? A HOH 201 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O15 ? K 6O7 . ? B 6O7 101 ? 1_555 90.3 ? 29 O ? M HOH . ? A HOH 203 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O15 ? K 6O7 . ? B 6O7 101 ? 1_555 100.0 ? 30 O14 ? E 6O7 . ? A 6O7 103 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O14 ? K 6O7 . ? B 6O7 101 ? 1_555 82.9 ? 31 O15 ? E 6O7 . ? A 6O7 103 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O14 ? K 6O7 . ? B 6O7 101 ? 1_555 87.7 ? 32 O ? M HOH . ? A HOH 201 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O14 ? K 6O7 . ? B 6O7 101 ? 1_555 168.0 ? 33 O ? M HOH . ? A HOH 203 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O14 ? K 6O7 . ? B 6O7 101 ? 1_555 79.4 ? 34 O15 ? K 6O7 . ? B 6O7 101 ? 1_555 ZN ? H ZN . ? A ZN 106 ? 1_555 O14 ? K 6O7 . ? B 6O7 101 ? 1_555 82.3 ? 35 N7 ? B DG 3 ? B DG 0 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? N HOH . ? B HOH 201 ? 1_555 91.5 ? 36 N7 ? B DG 3 ? B DG 0 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? N HOH . ? B HOH 202 ? 1_555 91.0 ? 37 O ? N HOH . ? B HOH 201 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? N HOH . ? B HOH 202 ? 1_555 146.2 ? 38 N7 ? B DG 3 ? B DG 0 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? N HOH . ? B HOH 203 ? 1_555 176.3 ? 39 O ? N HOH . ? B HOH 201 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? N HOH . ? B HOH 203 ? 1_555 84.9 ? 40 O ? N HOH . ? B HOH 202 ? 1_555 ZN ? L ZN . ? B ZN 102 ? 1_555 O ? N HOH . ? B HOH 203 ? 1_555 91.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 6O7 101 ? 13 'binding site for residue 6O7 A 101' AC2 Software A 6O7 102 ? 12 'binding site for residue 6O7 A 102' AC3 Software A 6O7 103 ? 12 'binding site for residue 6O7 A 103' AC4 Software A ZN 104 ? 4 'binding site for residue ZN A 104' AC5 Software A ZN 105 ? 3 'binding site for residue ZN A 105' AC6 Software A ZN 106 ? 4 'binding site for residue ZN A 106' AC7 Software A ZN 107 ? 2 'binding site for residue ZN A 107' AC8 Software A ZN 108 ? 2 'binding site for residue ZN A 108' AC9 Software B 6O7 101 ? 12 'binding site for residue 6O7 B 101' AD1 Software B ZN 102 ? 4 'binding site for residue ZN B 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 DA A 1 ? DA A 4 . ? 1_555 ? 2 AC1 13 DG A 3 ? DG A 6 . ? 1_555 ? 3 AC1 13 6O7 D . ? 6O7 A 102 . ? 1_555 ? 4 AC1 13 6O7 E . ? 6O7 A 103 . ? 7_455 ? 5 AC1 13 ZN F . ? ZN A 104 . ? 1_555 ? 6 AC1 13 HOH M . ? HOH A 204 . ? 1_555 ? 7 AC1 13 HOH M . ? HOH A 205 . ? 1_555 ? 8 AC1 13 DA B 1 ? DA B -2 . ? 3_454 ? 9 AC1 13 DG B 2 ? DG B -1 . ? 3_454 ? 10 AC1 13 DC B 8 ? DC B 5 . ? 1_555 ? 11 AC1 13 DC B 9 ? DC B 6 . ? 1_555 ? 12 AC1 13 DT B 10 ? DT B 7 . ? 1_555 ? 13 AC1 13 6O7 K . ? 6O7 B 101 . ? 7_455 ? 14 AC2 12 DG A 2 ? DG A 5 . ? 1_555 ? 15 AC2 12 DG A 3 ? DG A 6 . ? 1_555 ? 16 AC2 12 DG A 4 ? DG A 7 . ? 1_555 ? 17 AC2 12 DT A 5 ? DT A 8 . ? 1_555 ? 18 AC2 12 DA A 6 ? DA A 9 . ? 1_555 ? 19 AC2 12 6O7 C . ? 6O7 A 101 . ? 1_555 ? 20 AC2 12 ZN F . ? ZN A 104 . ? 1_555 ? 21 AC2 12 HOH M . ? HOH A 204 . ? 1_555 ? 22 AC2 12 HOH M . ? HOH A 205 . ? 1_555 ? 23 AC2 12 DC B 7 ? DC B 4 . ? 1_555 ? 24 AC2 12 DT B 10 ? DT B 7 . ? 1_555 ? 25 AC2 12 6O7 K . ? 6O7 B 101 . ? 7_455 ? 26 AC3 12 DC A 7 ? DC A 10 . ? 1_555 ? 27 AC3 12 DC A 8 ? DC A 11 . ? 1_555 ? 28 AC3 12 DC A 9 ? DC A 12 . ? 1_555 ? 29 AC3 12 DT A 10 ? DT A 13 . ? 1_555 ? 30 AC3 12 6O7 C . ? 6O7 A 101 . ? 7_565 ? 31 AC3 12 ZN H . ? ZN A 106 . ? 1_555 ? 32 AC3 12 HOH M . ? HOH A 201 . ? 1_555 ? 33 AC3 12 HOH M . ? HOH A 203 . ? 1_555 ? 34 AC3 12 DG B 2 ? DG B -1 . ? 1_555 ? 35 AC3 12 DG B 4 ? DG B 1 . ? 1_555 ? 36 AC3 12 DT B 5 ? DT B 2 . ? 1_555 ? 37 AC3 12 6O7 K . ? 6O7 B 101 . ? 1_555 ? 38 AC4 4 6O7 C . ? 6O7 A 101 . ? 1_555 ? 39 AC4 4 6O7 D . ? 6O7 A 102 . ? 1_555 ? 40 AC4 4 HOH M . ? HOH A 204 . ? 1_555 ? 41 AC4 4 HOH M . ? HOH A 205 . ? 1_555 ? 42 AC5 3 DG A 3 ? DG A 6 . ? 1_555 ? 43 AC5 3 HOH M . ? HOH A 206 . ? 1_555 ? 44 AC5 3 HOH M . ? HOH A 207 . ? 1_555 ? 45 AC6 4 6O7 E . ? 6O7 A 103 . ? 1_555 ? 46 AC6 4 HOH M . ? HOH A 201 . ? 1_555 ? 47 AC6 4 HOH M . ? HOH A 203 . ? 1_555 ? 48 AC6 4 6O7 K . ? 6O7 B 101 . ? 1_555 ? 49 AC7 2 DT A 5 ? DT A 8 . ? 1_555 ? 50 AC7 2 DA A 6 ? DA A 9 . ? 1_555 ? 51 AC8 2 DG A 2 ? DG A 5 . ? 1_555 ? 52 AC8 2 HOH M . ? HOH A 202 . ? 1_555 ? 53 AC9 12 DA A 6 ? DA A 9 . ? 1_555 ? 54 AC9 12 6O7 C . ? 6O7 A 101 . ? 7_565 ? 55 AC9 12 6O7 D . ? 6O7 A 102 . ? 7_565 ? 56 AC9 12 6O7 E . ? 6O7 A 103 . ? 1_555 ? 57 AC9 12 ZN H . ? ZN A 106 . ? 1_555 ? 58 AC9 12 HOH M . ? HOH A 201 . ? 1_555 ? 59 AC9 12 HOH M . ? HOH A 203 . ? 1_555 ? 60 AC9 12 DG B 3 ? DG B 0 . ? 1_555 ? 61 AC9 12 DG B 4 ? DG B 1 . ? 1_555 ? 62 AC9 12 DT B 5 ? DT B 2 . ? 1_555 ? 63 AC9 12 DA B 6 ? DA B 3 . ? 1_555 ? 64 AC9 12 DC B 7 ? DC B 4 . ? 1_555 ? 65 AD1 4 DG B 3 ? DG B 0 . ? 1_555 ? 66 AD1 4 HOH N . ? HOH B 201 . ? 1_555 ? 67 AD1 4 HOH N . ? HOH B 202 . ? 1_555 ? 68 AD1 4 HOH N . ? HOH B 203 . ? 1_555 ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6O7 C C N R 1 6O7 N N N N 2 6O7 O14 O N N 3 6O7 C20 C N N 4 6O7 C19 C Y N 5 6O7 C41 C Y N 6 6O7 O15 O N N 7 6O7 C42 C Y N 8 6O7 C60 C Y N 9 6O7 O23 O N N 10 6O7 C58 C Y N 11 6O7 C59 C N N 12 6O7 C45 C Y N 13 6O7 O16 O N N 14 6O7 C46 C N S 15 6O7 O17 O N N 16 6O7 C50 C N R 17 6O7 C51 C N N 18 6O7 C49 C N R 19 6O7 O18 O N N 20 6O7 C48 C N R 21 6O7 O19 O N N 22 6O7 C52 C N S 23 6O7 O20 O N N 24 6O7 C56 C N R 25 6O7 C57 C N N 26 6O7 C55 C N S 27 6O7 O21 O N N 28 6O7 C54 C N R 29 6O7 O22 O N N 30 6O7 C53 C N N 31 6O7 C47 C N N 32 6O7 C44 C Y N 33 6O7 C43 C Y N 34 6O7 C18 C Y N 35 6O7 C17 C Y N 36 6O7 C16 C N N 37 6O7 C21 C N S 38 6O7 C1 C N S 39 6O7 O3 O N N 40 6O7 C15 C N N 41 6O7 C2 C N N 42 6O7 O2 O N N 43 6O7 C3 C N S 44 6O7 C13 C N N 45 6O7 O1 O N N 46 6O7 O O N N 47 6O7 C14 C N N 48 6O7 C4 C N N 49 6O7 C5 C Y N 50 6O7 C10 C Y N 51 6O7 C9 C Y N 52 6O7 C8 C Y N 53 6O7 C7 C Y N 54 6O7 C6 C Y N 55 6O7 O4 O N N 56 6O7 C22 C N S 57 6O7 O5 O N N 58 6O7 C26 C N R 59 6O7 C27 C N N 60 6O7 C25 C N R 61 6O7 O6 O N N 62 6O7 C24 C N R 63 6O7 C23 C N N 64 6O7 O7 O N N 65 6O7 C28 C N S 66 6O7 O8 O N N 67 6O7 C32 C N R 68 6O7 C33 C N N 69 6O7 C31 C N S 70 6O7 O9 O N N 71 6O7 C30 C N R 72 6O7 C29 C N N 73 6O7 O10 O N N 74 6O7 C34 C N S 75 6O7 O12 O N N 76 6O7 C38 C N R 77 6O7 C39 C N N 78 6O7 C37 C N R 79 6O7 O13 O N N 80 6O7 C36 C N S 81 6O7 C40 C N N 82 6O7 O11 O N N 83 6O7 C35 C N N 84 6O7 H1 H N N 85 6O7 H2 H N N 86 6O7 H3 H N N 87 6O7 H4 H N N 88 6O7 H5 H N N 89 6O7 H6 H N N 90 6O7 H7 H N N 91 6O7 H8 H N N 92 6O7 H9 H N N 93 6O7 H10 H N N 94 6O7 H11 H N N 95 6O7 H12 H N N 96 6O7 H13 H N N 97 6O7 H14 H N N 98 6O7 H15 H N N 99 6O7 H16 H N N 100 6O7 H17 H N N 101 6O7 H18 H N N 102 6O7 H19 H N N 103 6O7 H20 H N N 104 6O7 H21 H N N 105 6O7 H22 H N N 106 6O7 H23 H N N 107 6O7 H24 H N N 108 6O7 H25 H N N 109 6O7 H26 H N N 110 6O7 H27 H N N 111 6O7 H28 H N N 112 6O7 H29 H N N 113 6O7 H30 H N N 114 6O7 H31 H N N 115 6O7 H32 H N N 116 6O7 H33 H N N 117 6O7 H34 H N N 118 6O7 H35 H N N 119 6O7 H36 H N N 120 6O7 H37 H N N 121 6O7 H38 H N N 122 6O7 H39 H N N 123 6O7 H40 H N N 124 6O7 H41 H N N 125 6O7 H42 H N N 126 6O7 H43 H N N 127 6O7 H44 H N N 128 6O7 H45 H N N 129 6O7 H46 H N N 130 6O7 H47 H N N 131 6O7 H48 H N N 132 6O7 H49 H N N 133 6O7 H50 H N N 134 6O7 H51 H N N 135 6O7 H52 H N N 136 6O7 H53 H N N 137 6O7 H54 H N N 138 6O7 H55 H N N 139 6O7 H56 H N N 140 6O7 H57 H N N 141 6O7 H58 H N N 142 6O7 H59 H N N 143 6O7 H60 H N N 144 6O7 H61 H N N 145 6O7 H62 H N N 146 6O7 H63 H N N 147 6O7 H64 H N N 148 6O7 H65 H N N 149 6O7 H66 H N N 150 6O7 H67 H N N 151 6O7 H68 H N N 152 6O7 H69 H N N 153 6O7 H70 H N N 154 6O7 H71 H N N 155 6O7 H72 H N N 156 6O7 H73 H N N 157 6O7 H74 H N N 158 6O7 H75 H N N 159 6O7 H76 H N N 160 6O7 H77 H N N 161 6O7 H78 H N N 162 6O7 H79 H N N 163 6O7 H80 H N N 164 6O7 H81 H N N 165 DA OP3 O N N 166 DA P P N N 167 DA OP1 O N N 168 DA OP2 O N N 169 DA "O5'" O N N 170 DA "C5'" C N N 171 DA "C4'" C N R 172 DA "O4'" O N N 173 DA "C3'" C N S 174 DA "O3'" O N N 175 DA "C2'" C N N 176 DA "C1'" C N R 177 DA N9 N Y N 178 DA C8 C Y N 179 DA N7 N Y N 180 DA C5 C Y N 181 DA C6 C Y N 182 DA N6 N N N 183 DA N1 N Y N 184 DA C2 C Y N 185 DA N3 N Y N 186 DA C4 C Y N 187 DA HOP3 H N N 188 DA HOP2 H N N 189 DA "H5'" H N N 190 DA "H5''" H N N 191 DA "H4'" H N N 192 DA "H3'" H N N 193 DA "HO3'" H N N 194 DA "H2'" H N N 195 DA "H2''" H N N 196 DA "H1'" H N N 197 DA H8 H N N 198 DA H61 H N N 199 DA H62 H N N 200 DA H2 H N N 201 DC OP3 O N N 202 DC P P N N 203 DC OP1 O N N 204 DC OP2 O N N 205 DC "O5'" O N N 206 DC "C5'" C N N 207 DC "C4'" C N R 208 DC "O4'" O N N 209 DC "C3'" C N S 210 DC "O3'" O N N 211 DC "C2'" C N N 212 DC "C1'" C N R 213 DC N1 N N N 214 DC C2 C N N 215 DC O2 O N N 216 DC N3 N N N 217 DC C4 C N N 218 DC N4 N N N 219 DC C5 C N N 220 DC C6 C N N 221 DC HOP3 H N N 222 DC HOP2 H N N 223 DC "H5'" H N N 224 DC "H5''" H N N 225 DC "H4'" H N N 226 DC "H3'" H N N 227 DC "HO3'" H N N 228 DC "H2'" H N N 229 DC "H2''" H N N 230 DC "H1'" H N N 231 DC H41 H N N 232 DC H42 H N N 233 DC H5 H N N 234 DC H6 H N N 235 DG OP3 O N N 236 DG P P N N 237 DG OP1 O N N 238 DG OP2 O N N 239 DG "O5'" O N N 240 DG "C5'" C N N 241 DG "C4'" C N R 242 DG "O4'" O N N 243 DG "C3'" C N S 244 DG "O3'" O N N 245 DG "C2'" C N N 246 DG "C1'" C N R 247 DG N9 N Y N 248 DG C8 C Y N 249 DG N7 N Y N 250 DG C5 C Y N 251 DG C6 C N N 252 DG O6 O N N 253 DG N1 N N N 254 DG C2 C N N 255 DG N2 N N N 256 DG N3 N N N 257 DG C4 C Y N 258 DG HOP3 H N N 259 DG HOP2 H N N 260 DG "H5'" H N N 261 DG "H5''" H N N 262 DG "H4'" H N N 263 DG "H3'" H N N 264 DG "HO3'" H N N 265 DG "H2'" H N N 266 DG "H2''" H N N 267 DG "H1'" H N N 268 DG H8 H N N 269 DG H1 H N N 270 DG H21 H N N 271 DG H22 H N N 272 DT OP3 O N N 273 DT P P N N 274 DT OP1 O N N 275 DT OP2 O N N 276 DT "O5'" O N N 277 DT "C5'" C N N 278 DT "C4'" C N R 279 DT "O4'" O N N 280 DT "C3'" C N S 281 DT "O3'" O N N 282 DT "C2'" C N N 283 DT "C1'" C N R 284 DT N1 N N N 285 DT C2 C N N 286 DT O2 O N N 287 DT N3 N N N 288 DT C4 C N N 289 DT O4 O N N 290 DT C5 C N N 291 DT C7 C N N 292 DT C6 C N N 293 DT HOP3 H N N 294 DT HOP2 H N N 295 DT "H5'" H N N 296 DT "H5''" H N N 297 DT "H4'" H N N 298 DT "H3'" H N N 299 DT "HO3'" H N N 300 DT "H2'" H N N 301 DT "H2''" H N N 302 DT "H1'" H N N 303 DT H3 H N N 304 DT H71 H N N 305 DT H72 H N N 306 DT H73 H N N 307 DT H6 H N N 308 HOH O O N N 309 HOH H1 H N N 310 HOH H2 H N N 311 ZN ZN ZN N N 312 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6O7 C40 C36 sing N N 1 6O7 C36 O11 sing N N 2 6O7 C36 C35 sing N N 3 6O7 C36 C37 sing N N 4 6O7 O13 C37 sing N N 5 6O7 C35 C34 sing N N 6 6O7 C37 C38 sing N N 7 6O7 C57 C56 sing N N 8 6O7 O21 C55 sing N N 9 6O7 C34 O10 sing N N 10 6O7 C34 O12 sing N N 11 6O7 C38 O12 sing N N 12 6O7 C38 C39 sing N N 13 6O7 O10 C30 sing N N 14 6O7 C56 C55 sing N N 15 6O7 C56 O20 sing N N 16 6O7 O9 C31 sing N N 17 6O7 C9 C10 doub Y N 18 6O7 C9 C8 sing Y N 19 6O7 C55 C54 sing N N 20 6O7 C10 C5 sing Y N 21 6O7 O1 C13 doub N N 22 6O7 O20 C52 sing N N 23 6O7 C30 C29 sing N N 24 6O7 C30 C31 sing N N 25 6O7 C8 C7 doub Y N 26 6O7 O2 C2 doub N N 27 6O7 C29 C28 sing N N 28 6O7 C31 C32 sing N N 29 6O7 C3 C13 sing N N 30 6O7 C3 N sing N N 31 6O7 C3 C4 sing N N 32 6O7 C13 O sing N N 33 6O7 C54 O22 sing N N 34 6O7 C54 C53 sing N N 35 6O7 C5 C4 sing N N 36 6O7 C5 C6 doub Y N 37 6O7 C2 N sing N N 38 6O7 C2 C1 sing N N 39 6O7 O7 C28 sing N N 40 6O7 O7 C24 sing N N 41 6O7 C52 C53 sing N N 42 6O7 C52 O19 sing N N 43 6O7 O8 C28 sing N N 44 6O7 O8 C32 sing N N 45 6O7 C7 C6 sing Y N 46 6O7 C32 C33 sing N N 47 6O7 O18 C49 sing N N 48 6O7 C1 C sing N N 49 6O7 C1 O3 sing N N 50 6O7 O C14 sing N N 51 6O7 C23 C24 sing N N 52 6O7 C23 C22 sing N N 53 6O7 C25 C24 sing N N 54 6O7 C25 O6 sing N N 55 6O7 C25 C26 sing N N 56 6O7 O4 C22 sing N N 57 6O7 O4 C21 sing N N 58 6O7 O19 C48 sing N N 59 6O7 C C16 sing N N 60 6O7 C C21 sing N N 61 6O7 C48 C49 sing N N 62 6O7 C48 C47 sing N N 63 6O7 O5 C22 sing N N 64 6O7 O5 C26 sing N N 65 6O7 C49 C50 sing N N 66 6O7 C16 C17 sing N N 67 6O7 C21 C20 sing N N 68 6O7 C26 C27 sing N N 69 6O7 O3 C15 sing N N 70 6O7 C50 C51 sing N N 71 6O7 C50 O17 sing N N 72 6O7 C47 C46 sing N N 73 6O7 C17 C18 doub Y N 74 6O7 C17 C19 sing Y N 75 6O7 C18 C43 sing Y N 76 6O7 C46 O17 sing N N 77 6O7 C46 O16 sing N N 78 6O7 C20 C19 sing N N 79 6O7 C20 O14 doub N N 80 6O7 C19 C41 doub Y N 81 6O7 C43 C44 doub Y N 82 6O7 C43 C42 sing Y N 83 6O7 C44 C45 sing Y N 84 6O7 C41 C42 sing Y N 85 6O7 C41 O15 sing N N 86 6O7 C42 C60 doub Y N 87 6O7 C45 O16 sing N N 88 6O7 C45 C58 doub Y N 89 6O7 C60 C58 sing Y N 90 6O7 C60 O23 sing N N 91 6O7 C58 C59 sing N N 92 6O7 C H1 sing N N 93 6O7 N H2 sing N N 94 6O7 O15 H3 sing N N 95 6O7 O23 H4 sing N N 96 6O7 C59 H5 sing N N 97 6O7 C59 H6 sing N N 98 6O7 C59 H7 sing N N 99 6O7 C46 H8 sing N N 100 6O7 C50 H9 sing N N 101 6O7 C51 H10 sing N N 102 6O7 C51 H11 sing N N 103 6O7 C51 H12 sing N N 104 6O7 C49 H13 sing N N 105 6O7 O18 H14 sing N N 106 6O7 C48 H15 sing N N 107 6O7 C52 H16 sing N N 108 6O7 C56 H17 sing N N 109 6O7 C57 H18 sing N N 110 6O7 C57 H19 sing N N 111 6O7 C57 H20 sing N N 112 6O7 C55 H21 sing N N 113 6O7 O21 H22 sing N N 114 6O7 C54 H23 sing N N 115 6O7 O22 H24 sing N N 116 6O7 C53 H25 sing N N 117 6O7 C53 H26 sing N N 118 6O7 C47 H27 sing N N 119 6O7 C47 H28 sing N N 120 6O7 C44 H29 sing N N 121 6O7 C18 H30 sing N N 122 6O7 C16 H31 sing N N 123 6O7 C16 H32 sing N N 124 6O7 C21 H33 sing N N 125 6O7 C1 H34 sing N N 126 6O7 C15 H35 sing N N 127 6O7 C15 H36 sing N N 128 6O7 C15 H37 sing N N 129 6O7 C3 H38 sing N N 130 6O7 C14 H39 sing N N 131 6O7 C14 H40 sing N N 132 6O7 C14 H41 sing N N 133 6O7 C4 H42 sing N N 134 6O7 C4 H43 sing N N 135 6O7 C10 H44 sing N N 136 6O7 C9 H45 sing N N 137 6O7 C8 H46 sing N N 138 6O7 C7 H47 sing N N 139 6O7 C6 H48 sing N N 140 6O7 C22 H49 sing N N 141 6O7 C26 H50 sing N N 142 6O7 C27 H51 sing N N 143 6O7 C27 H52 sing N N 144 6O7 C27 H53 sing N N 145 6O7 C25 H54 sing N N 146 6O7 O6 H55 sing N N 147 6O7 C24 H56 sing N N 148 6O7 C23 H57 sing N N 149 6O7 C23 H58 sing N N 150 6O7 C28 H59 sing N N 151 6O7 C32 H60 sing N N 152 6O7 C33 H61 sing N N 153 6O7 C33 H62 sing N N 154 6O7 C33 H63 sing N N 155 6O7 C31 H64 sing N N 156 6O7 O9 H65 sing N N 157 6O7 C30 H66 sing N N 158 6O7 C29 H67 sing N N 159 6O7 C29 H68 sing N N 160 6O7 C34 H69 sing N N 161 6O7 C38 H70 sing N N 162 6O7 C39 H71 sing N N 163 6O7 C39 H72 sing N N 164 6O7 C39 H73 sing N N 165 6O7 C37 H74 sing N N 166 6O7 O13 H75 sing N N 167 6O7 C40 H76 sing N N 168 6O7 C40 H77 sing N N 169 6O7 C40 H78 sing N N 170 6O7 O11 H79 sing N N 171 6O7 C35 H80 sing N N 172 6O7 C35 H81 sing N N 173 DA OP3 P sing N N 174 DA OP3 HOP3 sing N N 175 DA P OP1 doub N N 176 DA P OP2 sing N N 177 DA P "O5'" sing N N 178 DA OP2 HOP2 sing N N 179 DA "O5'" "C5'" sing N N 180 DA "C5'" "C4'" sing N N 181 DA "C5'" "H5'" sing N N 182 DA "C5'" "H5''" sing N N 183 DA "C4'" "O4'" sing N N 184 DA "C4'" "C3'" sing N N 185 DA "C4'" "H4'" sing N N 186 DA "O4'" "C1'" sing N N 187 DA "C3'" "O3'" sing N N 188 DA "C3'" "C2'" sing N N 189 DA "C3'" "H3'" sing N N 190 DA "O3'" "HO3'" sing N N 191 DA "C2'" "C1'" sing N N 192 DA "C2'" "H2'" sing N N 193 DA "C2'" "H2''" sing N N 194 DA "C1'" N9 sing N N 195 DA "C1'" "H1'" sing N N 196 DA N9 C8 sing Y N 197 DA N9 C4 sing Y N 198 DA C8 N7 doub Y N 199 DA C8 H8 sing N N 200 DA N7 C5 sing Y N 201 DA C5 C6 sing Y N 202 DA C5 C4 doub Y N 203 DA C6 N6 sing N N 204 DA C6 N1 doub Y N 205 DA N6 H61 sing N N 206 DA N6 H62 sing N N 207 DA N1 C2 sing Y N 208 DA C2 N3 doub Y N 209 DA C2 H2 sing N N 210 DA N3 C4 sing Y N 211 DC OP3 P sing N N 212 DC OP3 HOP3 sing N N 213 DC P OP1 doub N N 214 DC P OP2 sing N N 215 DC P "O5'" sing N N 216 DC OP2 HOP2 sing N N 217 DC "O5'" "C5'" sing N N 218 DC "C5'" "C4'" sing N N 219 DC "C5'" "H5'" sing N N 220 DC "C5'" "H5''" sing N N 221 DC "C4'" "O4'" sing N N 222 DC "C4'" "C3'" sing N N 223 DC "C4'" "H4'" sing N N 224 DC "O4'" "C1'" sing N N 225 DC "C3'" "O3'" sing N N 226 DC "C3'" "C2'" sing N N 227 DC "C3'" "H3'" sing N N 228 DC "O3'" "HO3'" sing N N 229 DC "C2'" "C1'" sing N N 230 DC "C2'" "H2'" sing N N 231 DC "C2'" "H2''" sing N N 232 DC "C1'" N1 sing N N 233 DC "C1'" "H1'" sing N N 234 DC N1 C2 sing N N 235 DC N1 C6 sing N N 236 DC C2 O2 doub N N 237 DC C2 N3 sing N N 238 DC N3 C4 doub N N 239 DC C4 N4 sing N N 240 DC C4 C5 sing N N 241 DC N4 H41 sing N N 242 DC N4 H42 sing N N 243 DC C5 C6 doub N N 244 DC C5 H5 sing N N 245 DC C6 H6 sing N N 246 DG OP3 P sing N N 247 DG OP3 HOP3 sing N N 248 DG P OP1 doub N N 249 DG P OP2 sing N N 250 DG P "O5'" sing N N 251 DG OP2 HOP2 sing N N 252 DG "O5'" "C5'" sing N N 253 DG "C5'" "C4'" sing N N 254 DG "C5'" "H5'" sing N N 255 DG "C5'" "H5''" sing N N 256 DG "C4'" "O4'" sing N N 257 DG "C4'" "C3'" sing N N 258 DG "C4'" "H4'" sing N N 259 DG "O4'" "C1'" sing N N 260 DG "C3'" "O3'" sing N N 261 DG "C3'" "C2'" sing N N 262 DG "C3'" "H3'" sing N N 263 DG "O3'" "HO3'" sing N N 264 DG "C2'" "C1'" sing N N 265 DG "C2'" "H2'" sing N N 266 DG "C2'" "H2''" sing N N 267 DG "C1'" N9 sing N N 268 DG "C1'" "H1'" sing N N 269 DG N9 C8 sing Y N 270 DG N9 C4 sing Y N 271 DG C8 N7 doub Y N 272 DG C8 H8 sing N N 273 DG N7 C5 sing Y N 274 DG C5 C6 sing N N 275 DG C5 C4 doub Y N 276 DG C6 O6 doub N N 277 DG C6 N1 sing N N 278 DG N1 C2 sing N N 279 DG N1 H1 sing N N 280 DG C2 N2 sing N N 281 DG C2 N3 doub N N 282 DG N2 H21 sing N N 283 DG N2 H22 sing N N 284 DG N3 C4 sing N N 285 DT OP3 P sing N N 286 DT OP3 HOP3 sing N N 287 DT P OP1 doub N N 288 DT P OP2 sing N N 289 DT P "O5'" sing N N 290 DT OP2 HOP2 sing N N 291 DT "O5'" "C5'" sing N N 292 DT "C5'" "C4'" sing N N 293 DT "C5'" "H5'" sing N N 294 DT "C5'" "H5''" sing N N 295 DT "C4'" "O4'" sing N N 296 DT "C4'" "C3'" sing N N 297 DT "C4'" "H4'" sing N N 298 DT "O4'" "C1'" sing N N 299 DT "C3'" "O3'" sing N N 300 DT "C3'" "C2'" sing N N 301 DT "C3'" "H3'" sing N N 302 DT "O3'" "HO3'" sing N N 303 DT "C2'" "C1'" sing N N 304 DT "C2'" "H2'" sing N N 305 DT "C2'" "H2''" sing N N 306 DT "C1'" N1 sing N N 307 DT "C1'" "H1'" sing N N 308 DT N1 C2 sing N N 309 DT N1 C6 sing N N 310 DT C2 O2 doub N N 311 DT C2 N3 sing N N 312 DT N3 C4 sing N N 313 DT N3 H3 sing N N 314 DT C4 O4 doub N N 315 DT C4 C5 sing N N 316 DT C5 C7 sing N N 317 DT C5 C6 doub N N 318 DT C7 H71 sing N N 319 DT C7 H72 sing N N 320 DT C7 H73 sing N N 321 DT C6 H6 sing N N 322 HOH O H1 sing N N 323 HOH O H2 sing N N 324 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5JW0 'double helix' 5JW0 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DA 1 1_555 B DT 10 1_555 0.334 -0.049 0.127 -5.454 -11.138 -1.009 1 A_DA4:DT7_B A 4 ? B 7 ? 20 1 1 A DG 2 1_555 B DC 9 1_555 -0.442 0.103 -0.040 -6.483 -12.846 3.907 2 A_DG5:DC6_B A 5 ? B 6 ? 19 1 1 A DG 3 1_555 B DC 8 1_555 -0.136 -0.099 -0.265 -21.205 -1.342 -4.127 3 A_DG6:DC5_B A 6 ? B 5 ? 19 1 1 A DG 4 1_555 B DC 7 1_555 -0.178 0.156 -0.218 1.249 -9.312 4.422 4 A_DG7:DC4_B A 7 ? B 4 ? 19 1 1 A DT 5 1_555 B DA 6 1_555 -0.235 -0.231 -0.106 10.284 -12.552 2.404 5 A_DT8:DA3_B A 8 ? B 3 ? 20 1 1 A DA 6 1_555 B DT 5 1_555 0.464 -0.006 0.337 13.234 -11.770 -3.016 6 A_DA9:DT2_B A 9 ? B 2 ? 20 1 1 A DC 7 1_555 B DG 4 1_555 0.611 0.059 0.393 12.413 -17.494 0.974 7 A_DC10:DG1_B A 10 ? B 1 ? 19 1 1 A DC 8 1_555 B DG 3 1_555 0.202 -0.023 0.112 6.670 -17.303 3.890 8 A_DC11:DG0_B A 11 ? B 0 ? 19 1 1 A DC 9 1_555 B DG 2 1_555 0.264 -0.049 -0.512 12.942 -15.035 -0.052 9 A_DC12:DG-1_B A 12 ? B -1 ? 19 1 1 A DT 10 1_555 B DA 1 1_555 -0.555 -0.267 -0.252 4.043 -10.847 1.003 10 A_DT13:DA-2_B A 13 ? B -2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DA 1 1_555 B DT 10 1_555 A DG 2 1_555 B DC 9 1_555 1.077 -1.683 3.392 4.096 2.894 26.046 -4.460 -1.229 3.316 6.345 -8.983 26.516 1 AA_DA4DG5:DC6DT7_BB A 4 ? B 7 ? A 5 ? B 6 ? 1 A DG 2 1_555 B DC 9 1_555 A DG 3 1_555 B DC 8 1_555 -0.418 -1.869 3.795 5.078 -1.588 35.438 -2.773 1.528 3.779 -2.591 -8.284 35.823 2 AA_DG5DG6:DC5DC6_BB A 5 ? B 6 ? A 6 ? B 5 ? 1 A DG 3 1_555 B DC 8 1_555 A DG 4 1_555 B DC 7 1_555 -0.449 -0.089 2.891 -0.962 9.394 29.676 -1.753 0.675 2.748 17.783 1.822 31.110 3 AA_DG6DG7:DC4DC5_BB A 6 ? B 5 ? A 7 ? B 4 ? 1 A DG 4 1_555 B DC 7 1_555 A DT 5 1_555 B DA 6 1_555 0.011 -0.416 3.190 -2.517 1.003 31.545 -0.943 -0.472 3.165 1.841 4.618 31.659 4 AA_DG7DT8:DA3DC4_BB A 7 ? B 4 ? A 8 ? B 3 ? 1 A DT 5 1_555 B DA 6 1_555 A DA 6 1_555 B DT 5 1_555 -0.533 -0.468 3.257 -4.325 8.956 33.413 -2.131 0.239 3.077 15.164 7.323 34.821 5 AA_DT8DA9:DT2DA3_BB A 8 ? B 3 ? A 9 ? B 2 ? 1 A DA 6 1_555 B DT 5 1_555 A DC 7 1_555 B DG 4 1_555 1.221 -1.216 3.380 -0.827 -5.054 29.132 -1.248 -2.578 3.501 -9.950 1.629 29.569 6 AA_DA9DC10:DG1DT2_BB A 9 ? B 2 ? A 10 ? B 1 ? 1 A DC 7 1_555 B DG 4 1_555 A DC 8 1_555 B DG 3 1_555 -0.014 -1.930 3.327 1.443 2.995 33.222 -3.852 0.262 3.143 5.222 -2.516 33.383 7 AA_DC10DC11:DG0DG1_BB A 10 ? B 1 ? A 11 ? B 0 ? 1 A DC 8 1_555 B DG 3 1_555 A DC 9 1_555 B DG 2 1_555 -1.608 -1.508 3.081 1.297 13.208 22.669 -6.213 3.827 1.841 30.477 -2.994 26.225 8 AA_DC11DC12:DG-1DG0_BB A 11 ? B 0 ? A 12 ? B -1 ? 1 A DC 9 1_555 B DG 2 1_555 A DT 10 1_555 B DA 1 1_555 0.219 -0.723 3.669 -1.047 3.729 35.095 -1.804 -0.534 3.568 6.160 1.729 35.301 9 AA_DC12DT13:DA-2DG-1_BB A 12 ? B -1 ? A 13 ? B -2 ? # _atom_sites.entry_id 5JW0 _atom_sites.fract_transf_matrix[1][1] 0.019777 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019777 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007984 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P ZN # loop_