HEADER DNA/ANTIBIOTIC 11-MAY-16 5JW0 TITLE CRYSTAL STRUCTURE OF MITHRAMYCIN ANALOGUE MTM SA-PHE IN COMPLEX WITH A TITLE 2 10-MER DNA AGGGTACCCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(P*AP*GP*GP*GP*TP*AP*CP*CP*CP*T)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32360 KEYWDS ANTI-CANCER AGENT, DNA BINDING, NATURAL PRODUCT, TRANSCRIPTION KEYWDS 2 FACTOR, EWING SARCOMA, DNA-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.HOU,J.ROHR,O.V.TSODIKOV REVDAT 3 06-MAR-24 5JW0 1 JRNL REMARK HETSYN LINK REVDAT 2 26-OCT-16 5JW0 1 JRNL REVDAT 1 14-SEP-16 5JW0 0 JRNL AUTH C.HOU,S.WEIDENBACH,K.E.CANO,Z.WANG,P.MITRA,D.N.IVANOV, JRNL AUTH 2 J.ROHR,O.V.TSODIKOV JRNL TITL STRUCTURES OF MITHRAMYCIN ANALOGUES BOUND TO DNA AND JRNL TITL 2 IMPLICATIONS FOR TARGETING TRANSCRIPTION FACTOR FLI1. JRNL REF NUCLEIC ACIDS RES. V. 44 8990 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27587584 JRNL DOI 10.1093/NAR/GKW761 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0071 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 6349 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.264 REMARK 3 R VALUE (WORKING SET) : 0.262 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 373 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 426 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 34 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 407 REMARK 3 HETEROGEN ATOMS : 342 REMARK 3 SOLVENT ATOMS : 10 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.96000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : -1.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.309 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.246 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.170 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.213 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.891 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 845 ; 0.009 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 517 ; 0.008 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1250 ; 1.745 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1233 ; 2.224 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 152 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 392 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 138 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1 ; 0.244 ; 3.838 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 845 ; 3.529 ; 4.429 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 836 ; 3.349 ; 4.427 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1251 ; 4.291 ; 6.627 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1145 ; 5.658 ;45.909 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1145 ; 5.654 ;45.911 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JW0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221309. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6349 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INCUBATION AGAINST AGAINST 35% V/V 2 REMARK 280 -METHYL-2,4-PENTANEDIOL, PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.62150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 25.28200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 25.28200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.93225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 25.28200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 25.28200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.31075 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 25.28200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.28200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.93225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 25.28200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.28200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.31075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.62150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: 1 COMPLEX OF 2 MTM SA-PHE DIMERS BOUND TO ONE DOUBLE- REMARK 300 STRANDED DNA OLIGOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -185.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 108 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 5 N7 REMARK 620 2 HOH A 202 O 108.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 6 N7 REMARK 620 2 HOH A 206 O 86.2 REMARK 620 3 HOH A 207 O 116.1 156.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 6O7 A 101 O14 REMARK 620 2 6O7 A 101 O15 78.0 REMARK 620 3 6O7 A 102 O14 73.3 96.6 REMARK 620 4 6O7 A 102 O15 88.4 166.4 80.2 REMARK 620 5 HOH A 204 O 92.8 80.9 166.1 99.0 REMARK 620 6 HOH A 205 O 157.2 84.5 94.4 108.8 98.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 106 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 6O7 A 103 O14 REMARK 620 2 6O7 A 103 O15 86.4 REMARK 620 3 HOH A 201 O 107.2 99.1 REMARK 620 4 HOH A 203 O 155.0 75.5 92.8 REMARK 620 5 6O7 B 101 O15 94.8 169.7 90.3 100.0 REMARK 620 6 6O7 B 101 O14 82.9 87.7 168.0 79.4 82.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 0 N7 REMARK 620 2 HOH B 201 O 91.5 REMARK 620 3 HOH B 202 O 91.0 146.2 REMARK 620 4 HOH B 203 O 176.3 84.9 91.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6O7 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6O7 A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6O7 A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6O7 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JW2 RELATED DB: PDB REMARK 900 RELATED ID: 5JVW RELATED DB: PDB REMARK 900 RELATED ID: 5JVT RELATED DB: PDB DBREF 5JW0 A 4 13 PDB 5JW0 5JW0 4 13 DBREF 5JW0 B -2 7 PDB 5JW0 5JW0 -2 7 SEQRES 1 A 10 DA DG DG DG DT DA DC DC DC DT SEQRES 1 B 10 DA DG DG DG DT DA DC DC DC DT HET 6O7 A 101 84 HET 6O7 A 102 84 HET 6O7 A 103 84 HET ZN A 104 1 HET ZN A 105 1 HET ZN A 106 1 HET ZN A 107 1 HET ZN A 108 1 HET 6O7 B 101 84 HET ZN B 102 1 HETNAM 6O7 PLICAMYCIN, MITHRAMYCIN ANALOGUE MTM SA-PHE HETNAM ZN ZINC ION HETSYN 6O7 METHYL (2S)-2-({(2S)-2-[(2R,3S)-3-{[(2S,4R,5R,6R)-4- HETSYN 2 6O7 {[(2S,4R,5S,6R)-4-{[(2S,4S,5R,6R)-4,5-DIHYDROXY-4,6- HETSYN 3 6O7 DIMETHYLTETRAHYDRO-2H-P YRAN-2-YL]OXY}-5-HYDROXY-6- HETSYN 4 6O7 METHYLTETRAHYDRO-2H-PYRAN-2-YL]OXY}-5-HYDROXY-6- HETSYN 5 6O7 METHYLTETRAHYDRO-2H-PYRAN-2-YL]OXY}-7-{[(2S,4 R,5R, HETSYN 6 6O7 6R)-4-{[(2S,4R,5S,6R)-4,5-DIHYDROXY-6- HETSYN 7 6O7 METHYLTETRAHYDRO-2H-PYRAN-2-YL]OXY}-5-HYDROXY-6- HETSYN 8 6O7 METHYLTETRAHYDRO-2H-PYRAN-2-Y L]OXY}-5,10-DIHYDROXY-6- HETSYN 9 6O7 METHYL-4-OXO-1,2,3,4-TETRAHYDROANTHRACEN-2-YL]-2- HETSYN 10 6O7 METHOXYACETYL}AMINO)-3-PHENYLPROPANOATE (NON-PREFERRED HETSYN 11 6O7 NAME) FORMUL 3 6O7 4(C59 H81 N O24) FORMUL 6 ZN 6(ZN 2+) FORMUL 13 HOH *10(H2 O) LINK N7 DG A 5 ZN ZN A 108 1555 1555 2.10 LINK N7 DG A 6 ZN ZN A 105 1555 1555 2.07 LINK N7 DA A 9 ZN ZN A 107 1555 1555 2.09 LINK O14 6O7 A 101 ZN ZN A 104 1555 1555 2.03 LINK O15 6O7 A 101 ZN ZN A 104 1555 1555 1.98 LINK O14 6O7 A 102 ZN ZN A 104 1555 1555 2.00 LINK O15 6O7 A 102 ZN ZN A 104 1555 1555 1.95 LINK O14 6O7 A 103 ZN ZN A 106 1555 1555 2.01 LINK O15 6O7 A 103 ZN ZN A 106 1555 1555 1.96 LINK ZN ZN A 104 O HOH A 204 1555 1555 1.97 LINK ZN ZN A 104 O HOH A 205 1555 1555 2.02 LINK ZN ZN A 105 O HOH A 206 1555 1555 2.00 LINK ZN ZN A 105 O HOH A 207 1555 1555 2.00 LINK ZN ZN A 106 O HOH A 201 1555 1555 1.99 LINK ZN ZN A 106 O HOH A 203 1555 1555 1.99 LINK ZN ZN A 106 O15 6O7 B 101 1555 1555 1.97 LINK ZN ZN A 106 O14 6O7 B 101 1555 1555 2.01 LINK ZN ZN A 108 O HOH A 202 1555 1555 1.99 LINK N7 DG B 0 ZN ZN B 102 1555 1555 2.10 LINK ZN ZN B 102 O HOH B 201 1555 1555 1.98 LINK ZN ZN B 102 O HOH B 202 1555 1555 1.99 LINK ZN ZN B 102 O HOH B 203 1555 1555 2.02 SITE 1 AC1 13 DA A 4 DG A 6 6O7 A 102 6O7 A 103 SITE 2 AC1 13 ZN A 104 HOH A 204 HOH A 205 DA B -2 SITE 3 AC1 13 DG B -1 DC B 5 DC B 6 DT B 7 SITE 4 AC1 13 6O7 B 101 SITE 1 AC2 12 DG A 5 DG A 6 DG A 7 DT A 8 SITE 2 AC2 12 DA A 9 6O7 A 101 ZN A 104 HOH A 204 SITE 3 AC2 12 HOH A 205 DC B 4 DT B 7 6O7 B 101 SITE 1 AC3 12 DC A 10 DC A 11 DC A 12 DT A 13 SITE 2 AC3 12 6O7 A 101 ZN A 106 HOH A 201 HOH A 203 SITE 3 AC3 12 DG B -1 DG B 1 DT B 2 6O7 B 101 SITE 1 AC4 4 6O7 A 101 6O7 A 102 HOH A 204 HOH A 205 SITE 1 AC5 3 DG A 6 HOH A 206 HOH A 207 SITE 1 AC6 4 6O7 A 103 HOH A 201 HOH A 203 6O7 B 101 SITE 1 AC7 2 DT A 8 DA A 9 SITE 1 AC8 2 DG A 5 HOH A 202 SITE 1 AC9 12 DA A 9 6O7 A 101 6O7 A 102 6O7 A 103 SITE 2 AC9 12 ZN A 106 HOH A 201 HOH A 203 DG B 0 SITE 3 AC9 12 DG B 1 DT B 2 DA B 3 DC B 4 SITE 1 AD1 4 DG B 0 HOH B 201 HOH B 202 HOH B 203 CRYST1 50.564 50.564 125.243 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019777 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019777 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007984 0.00000