HEADER DNA/ANTIBIOTIC 11-MAY-16 5JW2 TITLE CRYSTAL STRUCTURE OF MITHRAMYCIN ANALOGUE MTM SA-PHE IN COMPLEX WITH A TITLE 2 10-MER DNA AGGGATCCCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*AP*GP*GP*GP*AP*TP*CP*CP*CP*T)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS ANTI-CANCER AGENT, DNA BINDING, NATURAL PRODUCT, TRANSCRIPTION KEYWDS 2 FACTOR, EWING SARCOMA, DNA-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.HOU,J.ROHR,O.V.TSODIKOV REVDAT 3 06-MAR-24 5JW2 1 JRNL REMARK HETSYN LINK REVDAT 2 26-OCT-16 5JW2 1 JRNL REVDAT 1 14-SEP-16 5JW2 0 JRNL AUTH C.HOU,S.WEIDENBACH,K.E.CANO,Z.WANG,P.MITRA,D.N.IVANOV, JRNL AUTH 2 J.ROHR,O.V.TSODIKOV JRNL TITL STRUCTURES OF MITHRAMYCIN ANALOGUES BOUND TO DNA AND JRNL TITL 2 IMPLICATIONS FOR TARGETING TRANSCRIPTION FACTOR FLI1. JRNL REF NUCLEIC ACIDS RES. V. 44 8990 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27587584 JRNL DOI 10.1093/NAR/GKW761 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 3055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.280 REMARK 3 R VALUE (WORKING SET) : 0.279 REMARK 3 FREE R VALUE : 0.288 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 156 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.18 REMARK 3 REFLECTION IN BIN (WORKING SET) : 219 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4100 REMARK 3 BIN FREE R VALUE SET COUNT : 8 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 404 REMARK 3 HETEROGEN ATOMS : 341 REMARK 3 SOLVENT ATOMS : 20 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.21000 REMARK 3 B22 (A**2) : -2.21000 REMARK 3 B33 (A**2) : 4.42000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.455 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.344 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.357 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.814 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 845 ; 0.009 ; 0.015 REMARK 3 BOND LENGTHS OTHERS (A): 546 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1246 ; 1.969 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1248 ; 1.394 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 152 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 390 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 136 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1 ; 0.199 ; 1.707 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 845 ; 0.530 ; 1.230 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 846 ; 0.529 ; 1.229 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1247 ; 0.901 ; 1.838 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 1179 ; 2.146 ;12.771 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 1180 ; 2.145 ;12.765 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 3055 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 14.60 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INCUBATED AGAINST 35% V/V 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.14750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 24.69000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 24.69000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 96.22125 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 24.69000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 24.69000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.07375 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 24.69000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 24.69000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 96.22125 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 24.69000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 24.69000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.07375 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 64.14750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: 1 COMPLEX OF TWO MTM SA-PHE DIMERS BOUND TO ONE DOUBLE- REMARK 300 STRANDED DNA OLIGOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -160.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O14 6O7 A 103 O14 6O7 B 101 1.94 REMARK 500 O HOH A 203 O HOH A 205 2.10 REMARK 500 O14 6O7 A 101 O14 6O7 A 102 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 106 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 5 N7 REMARK 620 2 HOH A 206 O 94.4 REMARK 620 3 HOH A 208 O 126.8 117.2 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 105 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 6 N7 REMARK 620 2 HOH A 203 O 87.4 REMARK 620 3 HOH A 204 O 82.2 147.7 REMARK 620 4 HOH A 205 O 83.6 63.2 85.3 REMARK 620 5 HOH A 209 O 155.9 75.2 103.6 73.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 104 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 6O7 A 101 O14 REMARK 620 2 6O7 A 101 O15 82.7 REMARK 620 3 6O7 A 102 O14 66.7 107.3 REMARK 620 4 6O7 A 102 O15 91.0 160.0 87.3 REMARK 620 5 HOH A 201 O 171.1 88.3 116.3 97.5 REMARK 620 6 HOH A 202 O 81.7 84.6 143.9 75.7 97.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 102 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 6O7 A 103 O14 REMARK 620 2 6O7 A 103 O15 80.7 REMARK 620 3 6O7 B 101 O14 58.6 76.7 REMARK 620 4 6O7 B 101 O15 100.0 175.6 107.4 REMARK 620 5 HOH B 201 O 102.2 105.6 160.5 70.0 REMARK 620 6 HOH B 202 O 139.2 90.3 80.6 91.9 118.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 103 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG B 0 N7 REMARK 620 2 HOH B 203 O 81.1 REMARK 620 3 HOH B 204 O 85.6 117.3 REMARK 620 4 HOH B 207 O 101.4 148.4 94.3 REMARK 620 5 HOH B 210 O 158.3 89.1 116.1 77.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6O7 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6O7 A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6O7 A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6O7 B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 103 DBREF 5JW2 A 4 13 PDB 5JW2 5JW2 4 13 DBREF 5JW2 B -2 7 PDB 5JW2 5JW2 -2 7 SEQRES 1 A 10 DA DG DG DG DA DT DC DC DC DT SEQRES 1 B 10 DA DG DG DG DA DT DC DC DC DT HET 6O7 A 101 84 HET 6O7 A 102 84 HET 6O7 A 103 84 HET ZN A 104 1 HET ZN A 105 1 HET ZN A 106 1 HET 6O7 B 101 84 HET ZN B 102 1 HET ZN B 103 1 HETNAM 6O7 PLICAMYCIN, MITHRAMYCIN ANALOGUE MTM SA-PHE HETNAM ZN ZINC ION HETSYN 6O7 METHYL (2S)-2-({(2S)-2-[(2R,3S)-3-{[(2S,4R,5R,6R)-4- HETSYN 2 6O7 {[(2S,4R,5S,6R)-4-{[(2S,4S,5R,6R)-4,5-DIHYDROXY-4,6- HETSYN 3 6O7 DIMETHYLTETRAHYDRO-2H-P YRAN-2-YL]OXY}-5-HYDROXY-6- HETSYN 4 6O7 METHYLTETRAHYDRO-2H-PYRAN-2-YL]OXY}-5-HYDROXY-6- HETSYN 5 6O7 METHYLTETRAHYDRO-2H-PYRAN-2-YL]OXY}-7-{[(2S,4 R,5R, HETSYN 6 6O7 6R)-4-{[(2S,4R,5S,6R)-4,5-DIHYDROXY-6- HETSYN 7 6O7 METHYLTETRAHYDRO-2H-PYRAN-2-YL]OXY}-5-HYDROXY-6- HETSYN 8 6O7 METHYLTETRAHYDRO-2H-PYRAN-2-Y L]OXY}-5,10-DIHYDROXY-6- HETSYN 9 6O7 METHYL-4-OXO-1,2,3,4-TETRAHYDROANTHRACEN-2-YL]-2- HETSYN 10 6O7 METHOXYACETYL}AMINO)-3-PHENYLPROPANOATE (NON-PREFERRED HETSYN 11 6O7 NAME) FORMUL 3 6O7 4(C59 H81 N O24) FORMUL 6 ZN 5(ZN 2+) FORMUL 12 HOH *20(H2 O) LINK N7 DG A 5 ZN ZN A 106 1555 1555 2.07 LINK N7 DG A 6 ZN ZN A 105 1555 1555 2.09 LINK O14 6O7 A 101 ZN ZN A 104 1555 1555 1.97 LINK O15 6O7 A 101 ZN ZN A 104 1555 1555 1.95 LINK O14 6O7 A 102 ZN ZN A 104 1555 1555 1.96 LINK O15 6O7 A 102 ZN ZN A 104 1555 1555 1.94 LINK O14 6O7 A 103 ZN ZN B 102 1555 1555 2.01 LINK O15 6O7 A 103 ZN ZN B 102 1555 1555 1.96 LINK ZN ZN A 104 O HOH A 201 1555 1555 1.98 LINK ZN ZN A 104 O HOH A 202 1555 1555 1.97 LINK ZN ZN A 105 O HOH A 203 1555 1555 2.00 LINK ZN ZN A 105 O HOH A 204 1555 1555 2.00 LINK ZN ZN A 105 O HOH A 205 1555 1555 2.01 LINK ZN ZN A 105 O HOH A 209 1555 1555 2.00 LINK ZN ZN A 106 O HOH A 206 1555 1555 1.99 LINK ZN ZN A 106 O HOH A 208 1555 1555 1.99 LINK N7 DG B 0 ZN ZN B 103 1555 1555 2.05 LINK O14 6O7 B 101 ZN ZN B 102 1555 1555 1.95 LINK O15 6O7 B 101 ZN ZN B 102 1555 1555 1.92 LINK ZN ZN B 102 O HOH B 201 1555 1555 1.99 LINK ZN ZN B 102 O HOH B 202 1555 1555 1.98 LINK ZN ZN B 103 O HOH B 203 1555 1555 2.00 LINK ZN ZN B 103 O HOH B 204 1555 1555 2.00 LINK ZN ZN B 103 O HOH B 207 1555 1555 2.00 LINK ZN ZN B 103 O HOH B 210 1555 1555 2.00 SITE 1 AC1 13 DA A 4 DG A 5 DG A 6 6O7 A 102 SITE 2 AC1 13 6O7 A 103 ZN A 104 HOH A 201 HOH A 202 SITE 3 AC1 13 DG B -1 DA B -2 DC B 5 DC B 6 SITE 4 AC1 13 DT B 7 SITE 1 AC2 12 DG A 5 DG A 6 DG A 7 DA A 8 SITE 2 AC2 12 DT A 9 6O7 A 101 ZN A 104 HOH A 201 SITE 3 AC2 12 HOH A 202 DC B 4 DC B 5 6O7 B 101 SITE 1 AC3 11 DC A 10 DC A 11 DC A 12 DT A 13 SITE 2 AC3 11 6O7 A 101 DG B -1 DG B 0 DG B 1 SITE 3 AC3 11 6O7 B 101 ZN B 102 HOH B 202 SITE 1 AC4 4 6O7 A 101 6O7 A 102 HOH A 201 HOH A 202 SITE 1 AC5 5 DG A 6 HOH A 203 HOH A 204 HOH A 205 SITE 2 AC5 5 HOH A 209 SITE 1 AC6 3 DG A 5 HOH A 206 HOH A 208 SITE 1 AC7 12 DT A 9 DC A 12 6O7 A 102 6O7 A 103 SITE 2 AC7 12 DG B 0 DG B 1 DA B 2 DT B 3 SITE 3 AC7 12 DC B 4 ZN B 102 HOH B 201 HOH B 202 SITE 1 AC8 5 DC A 11 6O7 A 103 6O7 B 101 HOH B 201 SITE 2 AC8 5 HOH B 202 SITE 1 AC9 5 DG B 0 HOH B 203 HOH B 204 HOH B 207 SITE 2 AC9 5 HOH B 210 CRYST1 49.380 49.380 128.295 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020251 0.000000 0.000000 0.00000 SCALE2 0.000000 0.020251 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007795 0.00000