HEADER HYDROLASE 13-MAY-16 5JYB TITLE CRYSTAL STRUCTURE OF 3 MUTANT OF BA3275 (S116A, E243A, H313A), THE TITLE 2 MEMBER OF S66 FAMILY OF SERINE PEPTIDASES COMPND MOL_ID: 1; COMPND 2 MOLECULE: MCCC FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS (STRAIN ATCC 10987 / NRS 248); SOURCE 3 ORGANISM_TAXID: 222523; SOURCE 4 STRAIN: ATCC 10987 / NRS 248; SOURCE 5 GENE: BCE_3281; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PEPTIDASE, HYDROLASE, INACTIVE ENZYME, BA3275, STRUCTURAL KEYWDS 2 GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 3 CSGID EXPDTA X-RAY DIFFRACTION AUTHOR B.NOCEK,R.JEDRZEJCZAK,A.JOACHIMIAK,CSGID,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 27-SEP-23 5JYB 1 REMARK REVDAT 1 15-JUN-16 5JYB 0 JRNL AUTH B.NOCEK,R.JEDRZEJCZAK,A.JOACHIMIAK,CSGID JRNL TITL CRYSTAL STRUCTURE OF 3 MUTANT OF BA3275 (S116A, E243A, JRNL TITL 2 H313A), THE MEMBER OF S66 FAMILY OF SERINE PEPTIDASES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1888 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 74065 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.141 REMARK 3 R VALUE (WORKING SET) : 0.140 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 3839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.3069 - 4.9369 0.94 2985 159 0.1624 0.1627 REMARK 3 2 4.9369 - 3.9200 0.98 3017 152 0.1126 0.1235 REMARK 3 3 3.9200 - 3.4249 0.98 3041 157 0.1159 0.1445 REMARK 3 4 3.4249 - 3.1120 0.99 2981 203 0.1287 0.1613 REMARK 3 5 3.1120 - 2.8890 0.94 2881 170 0.1325 0.1661 REMARK 3 6 2.8890 - 2.7188 0.98 2990 148 0.1364 0.1818 REMARK 3 7 2.7188 - 2.5826 0.98 3038 147 0.1287 0.1461 REMARK 3 8 2.5826 - 2.4702 0.98 3000 150 0.1272 0.1536 REMARK 3 9 2.4702 - 2.3752 0.98 2993 139 0.1203 0.1406 REMARK 3 10 2.3752 - 2.2932 0.98 2970 166 0.1261 0.1662 REMARK 3 11 2.2932 - 2.2215 0.98 3025 167 0.1267 0.1568 REMARK 3 12 2.2215 - 2.1580 0.98 2953 156 0.1336 0.1638 REMARK 3 13 2.1580 - 2.1012 0.93 2787 176 0.1405 0.1796 REMARK 3 14 2.1012 - 2.0500 0.95 2900 144 0.1460 0.1650 REMARK 3 15 2.0500 - 2.0034 0.96 2922 157 0.1503 0.1706 REMARK 3 16 2.0034 - 1.9607 0.95 2857 168 0.1526 0.1792 REMARK 3 17 1.9607 - 1.9215 0.93 2836 137 0.1554 0.1755 REMARK 3 18 1.9215 - 1.8853 0.89 2707 150 0.1650 0.1970 REMARK 3 19 1.8853 - 1.8516 0.84 2538 145 0.1688 0.1944 REMARK 3 20 1.8516 - 1.8202 0.80 2403 144 0.1809 0.2108 REMARK 3 21 1.8202 - 1.7908 0.74 2250 128 0.1890 0.1999 REMARK 3 22 1.7908 - 1.7633 0.71 2167 114 0.1971 0.2251 REMARK 3 23 1.7633 - 1.7374 0.67 2009 119 0.1935 0.2134 REMARK 3 24 1.7374 - 1.7129 0.63 1939 102 0.1997 0.2167 REMARK 3 25 1.7129 - 1.6897 0.55 1660 91 0.2118 0.2371 REMARK 3 26 1.6897 - 1.6678 0.45 1339 88 0.2111 0.2094 REMARK 3 27 1.6678 - 1.6469 0.34 1038 62 0.1980 0.2059 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5848 REMARK 3 ANGLE : 1.223 7921 REMARK 3 CHIRALITY : 0.048 832 REMARK 3 PLANARITY : 0.006 1025 REMARK 3 DIHEDRAL : 15.640 2201 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.6790 -1.3888 -6.3241 REMARK 3 T TENSOR REMARK 3 T11: 0.0810 T22: 0.0612 REMARK 3 T33: 0.0693 T12: -0.0035 REMARK 3 T13: -0.0112 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.6697 L22: 0.6329 REMARK 3 L33: 1.3476 L12: 0.0481 REMARK 3 L13: -0.4415 L23: -0.1821 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: 0.0814 S13: -0.0064 REMARK 3 S21: -0.0587 S22: 0.0041 S23: 0.0248 REMARK 3 S31: 0.0316 S32: -0.0940 S33: 0.0181 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 206 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4763 8.4106 -4.2266 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.1024 REMARK 3 T33: 0.1207 T12: -0.0181 REMARK 3 T13: 0.0111 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.0541 L22: 0.6155 REMARK 3 L33: 1.5515 L12: -0.3051 REMARK 3 L13: 0.5544 L23: -0.4701 REMARK 3 S TENSOR REMARK 3 S11: -0.0566 S12: -0.0476 S13: 0.1196 REMARK 3 S21: 0.0287 S22: 0.0075 S23: -0.1682 REMARK 3 S31: -0.0795 S32: 0.1386 S33: 0.0594 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 207 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7282 -2.7948 13.4238 REMARK 3 T TENSOR REMARK 3 T11: 0.0820 T22: 0.0706 REMARK 3 T33: 0.0652 T12: 0.0213 REMARK 3 T13: -0.0054 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.2373 L22: 0.7605 REMARK 3 L33: 1.7133 L12: 0.5158 REMARK 3 L13: -0.1752 L23: 0.2250 REMARK 3 S TENSOR REMARK 3 S11: -0.0010 S12: -0.0634 S13: -0.0352 REMARK 3 S21: 0.0242 S22: -0.0705 S23: 0.0053 REMARK 3 S31: 0.1777 S32: 0.0929 S33: 0.0523 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.1419 0.2506 10.0340 REMARK 3 T TENSOR REMARK 3 T11: 0.0611 T22: 0.1185 REMARK 3 T33: 0.1081 T12: 0.0160 REMARK 3 T13: 0.0026 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.5607 L22: 0.6928 REMARK 3 L33: 1.6267 L12: 0.1031 REMARK 3 L13: -0.1236 L23: 0.1590 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: -0.0879 S13: 0.0092 REMARK 3 S21: 0.0196 S22: -0.0075 S23: -0.0834 REMARK 3 S31: 0.0661 S32: 0.2764 S33: -0.0061 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.0926 -1.5205 46.8812 REMARK 3 T TENSOR REMARK 3 T11: 0.0940 T22: 0.0811 REMARK 3 T33: 0.0655 T12: 0.0081 REMARK 3 T13: -0.0105 T23: -0.0066 REMARK 3 L TENSOR REMARK 3 L11: 1.5587 L22: 0.5775 REMARK 3 L33: 1.8790 L12: -0.2041 REMARK 3 L13: -0.6234 L23: -0.2236 REMARK 3 S TENSOR REMARK 3 S11: -0.0745 S12: -0.1622 S13: -0.0319 REMARK 3 S21: -0.0111 S22: 0.0076 S23: -0.0133 REMARK 3 S31: 0.1534 S32: 0.1327 S33: 0.0201 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 30 THROUGH 231 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.4467 2.1587 41.4184 REMARK 3 T TENSOR REMARK 3 T11: 0.0760 T22: 0.0788 REMARK 3 T33: 0.0813 T12: -0.0026 REMARK 3 T13: -0.0030 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.6690 L22: 0.4752 REMARK 3 L33: 1.2846 L12: -0.0027 REMARK 3 L13: -0.2339 L23: -0.0122 REMARK 3 S TENSOR REMARK 3 S11: 0.0008 S12: -0.0866 S13: 0.0276 REMARK 3 S21: 0.0454 S22: -0.0093 S23: -0.0334 REMARK 3 S31: 0.0345 S32: 0.0742 S33: 0.0070 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 343 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.6288 3.0850 26.1987 REMARK 3 T TENSOR REMARK 3 T11: 0.0596 T22: 0.0971 REMARK 3 T33: 0.0876 T12: -0.0068 REMARK 3 T13: -0.0087 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.5695 L22: 0.6689 REMARK 3 L33: 1.9583 L12: -0.0723 REMARK 3 L13: -0.4279 L23: -0.0976 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.0308 S13: 0.0025 REMARK 3 S21: -0.0208 S22: 0.0046 S23: 0.0537 REMARK 3 S31: 0.0359 S32: -0.2182 S33: -0.0095 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 82827 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.647 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: 5F1Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES PH 7.5 0.15 M, 2-BUTANOL 4.000 REMARK 280 %(V/V), PEG 20000 16.0 %(W/V), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.61250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CD CE NZ REMARK 470 ARG B 179 CD NE CZ NH1 NH2 REMARK 470 LYS B 233 CD CE NZ REMARK 470 GLU B 246 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 245 O HOH A 502 1.55 REMARK 500 O HOH A 728 O HOH A 788 1.95 REMARK 500 OE1 GLU A 227 O HOH A 501 1.98 REMARK 500 O HOH A 757 O HOH A 809 2.02 REMARK 500 OG SER A 245 O HOH A 502 2.05 REMARK 500 OE1 GLU A 70 O HOH A 503 2.08 REMARK 500 O HOH B 693 O HOH B 763 2.11 REMARK 500 O HOH A 522 O HOH A 749 2.12 REMARK 500 OE1 GLU A 218 O HOH A 502 2.14 REMARK 500 O HOH A 775 O HOH A 803 2.15 REMARK 500 O HOH B 750 O HOH B 770 2.15 REMARK 500 O HOH A 573 O HOH A 812 2.18 REMARK 500 O HOH A 567 O HOH A 768 2.19 REMARK 500 O HOH B 523 O HOH B 706 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 20 -113.42 -116.49 REMARK 500 GLN A 91 -10.40 -158.48 REMARK 500 ALA A 116 -119.42 64.97 REMARK 500 ASP A 141 -53.28 -120.81 REMARK 500 VAL A 146 -52.33 79.55 REMARK 500 SER A 177 33.63 -143.65 REMARK 500 SER A 205 24.56 -145.53 REMARK 500 SER A 245 -169.77 -103.55 REMARK 500 HIS A 248 70.73 50.23 REMARK 500 ASP A 280 13.24 59.03 REMARK 500 ASN A 308 30.69 74.56 REMARK 500 SER B 20 -111.98 -117.10 REMARK 500 GLN B 91 -9.31 -154.22 REMARK 500 ALA B 116 -121.80 61.51 REMARK 500 ASP B 141 -53.56 -124.27 REMARK 500 VAL B 146 -52.97 81.16 REMARK 500 SER B 177 35.04 -143.72 REMARK 500 SER B 205 18.12 -140.20 REMARK 500 SER B 245 -167.90 -105.50 REMARK 500 HIS B 248 71.22 50.03 REMARK 500 ASN B 308 30.57 74.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EPE A 403 REMARK 610 EPE B 404 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SBT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPE B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SBT B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP95363 RELATED DB: TARGETTRACK DBREF 5JYB A 1 343 UNP Q734X3 Q734X3_BACC1 1 343 DBREF 5JYB B 1 343 UNP Q734X3 Q734X3_BACC1 1 343 SEQADV 5JYB SER A -2 UNP Q734X3 EXPRESSION TAG SEQADV 5JYB ASN A -1 UNP Q734X3 EXPRESSION TAG SEQADV 5JYB ALA A 0 UNP Q734X3 EXPRESSION TAG SEQADV 5JYB ALA A 116 UNP Q734X3 SER 116 ENGINEERED MUTATION SEQADV 5JYB ALA A 243 UNP Q734X3 GLU 243 ENGINEERED MUTATION SEQADV 5JYB ALA A 313 UNP Q734X3 HIS 313 ENGINEERED MUTATION SEQADV 5JYB SER B -2 UNP Q734X3 EXPRESSION TAG SEQADV 5JYB ASN B -1 UNP Q734X3 EXPRESSION TAG SEQADV 5JYB ALA B 0 UNP Q734X3 EXPRESSION TAG SEQADV 5JYB ALA B 116 UNP Q734X3 SER 116 ENGINEERED MUTATION SEQADV 5JYB ALA B 243 UNP Q734X3 GLU 243 ENGINEERED MUTATION SEQADV 5JYB ALA B 313 UNP Q734X3 HIS 313 ENGINEERED MUTATION SEQRES 1 A 346 SER ASN ALA MET LEU ILE LYS PRO LYS ARG LEU GLN PRO SEQRES 2 A 346 GLY ASP ILE VAL ALA THR VAL SER PRO SER TRP GLY GLY SEQRES 3 A 346 ALA GLY ASP SER GLU ILE ARG TRP ARG TYR GLU GLN GLY SEQRES 4 A 346 VAL LYS ARG LEU GLU GLU VAL PHE GLY LEU THR VAL VAL SEQRES 5 A 346 PRO MET PRO ASN SER LEU LYS GLY SER GLU PHE ILE TYR SEQRES 6 A 346 ASN ASN PRO GLN ALA ARG ALA GLU ASP LEU MET THR ALA SEQRES 7 A 346 PHE GLN ASP THR ARG VAL LYS ALA ILE ILE ALA ASN ILE SEQRES 8 A 346 GLY GLY GLN ASP SER ILE ARG LEU LEU PRO TYR ILE ASP SEQRES 9 A 346 PHE ASN ALA ILE ARG GLU ASN PRO LYS ILE PHE MET GLY SEQRES 10 A 346 TYR ALA ASP VAL THR ILE SER HIS LEU PHE CYS HIS LYS SEQRES 11 A 346 ALA GLY LEU SER SER PHE TYR GLY PRO ALA ILE LEU THR SEQRES 12 A 346 ASP PHE ALA GLU ASN VAL GLU MET ASP PRO TYR THR VAL SEQRES 13 A 346 GLU MET VAL ASN ARG THR LEU PHE SER ASN GLU MET ILE SEQRES 14 A 346 GLY GLU ILE GLN PRO ALA PRO GLU TRP THR SER GLU ARG SEQRES 15 A 346 LEU GLU TRP ILE GLU ILE ASN LYS ASP THR ARG ARG THR SEQRES 16 A 346 MET GLN GLN ASN ASN GLY TYR GLU LEU LEU GLN GLY SER SEQRES 17 A 346 THR THR VAL GLN GLY ARG LEU ILE GLY GLY CYS ILE GLU SEQRES 18 A 346 VAL LEU GLU PHE ALA LYS GLY THR GLU LEU TRP PRO GLU SEQRES 19 A 346 LYS LYS HIS TRP GLU ASP SER ILE LEU PHE PHE ALA THR SEQRES 20 A 346 SER GLU ASP HIS PRO GLU PRO SER TYR ILE LYS TYR TRP SEQRES 21 A 346 LEU ARG ASN TYR ALA ALA GLN GLY ILE LEU GLN LYS ALA SEQRES 22 A 346 LYS GLY ILE ILE PHE GLY LYS PRO LYS ASP GLU MET TYR SEQRES 23 A 346 TYR GLU GLU TYR LYS HIS GLU ILE LEU GLN VAL MET LYS SEQRES 24 A 346 GLU HIS ASN LEU GLU ASP LEU PRO ILE LEU TYR ASN LEU SEQRES 25 A 346 ASN PHE GLY ALA THR GLU PRO LYS PHE ILE LEU PRO TYR SEQRES 26 A 346 GLY SER MET ALA GLU ILE ASP CYS GLU ASN GLY SER PHE SEQRES 27 A 346 SER ILE LEU GLU SER GLY VAL GLU SEQRES 1 B 346 SER ASN ALA MET LEU ILE LYS PRO LYS ARG LEU GLN PRO SEQRES 2 B 346 GLY ASP ILE VAL ALA THR VAL SER PRO SER TRP GLY GLY SEQRES 3 B 346 ALA GLY ASP SER GLU ILE ARG TRP ARG TYR GLU GLN GLY SEQRES 4 B 346 VAL LYS ARG LEU GLU GLU VAL PHE GLY LEU THR VAL VAL SEQRES 5 B 346 PRO MET PRO ASN SER LEU LYS GLY SER GLU PHE ILE TYR SEQRES 6 B 346 ASN ASN PRO GLN ALA ARG ALA GLU ASP LEU MET THR ALA SEQRES 7 B 346 PHE GLN ASP THR ARG VAL LYS ALA ILE ILE ALA ASN ILE SEQRES 8 B 346 GLY GLY GLN ASP SER ILE ARG LEU LEU PRO TYR ILE ASP SEQRES 9 B 346 PHE ASN ALA ILE ARG GLU ASN PRO LYS ILE PHE MET GLY SEQRES 10 B 346 TYR ALA ASP VAL THR ILE SER HIS LEU PHE CYS HIS LYS SEQRES 11 B 346 ALA GLY LEU SER SER PHE TYR GLY PRO ALA ILE LEU THR SEQRES 12 B 346 ASP PHE ALA GLU ASN VAL GLU MET ASP PRO TYR THR VAL SEQRES 13 B 346 GLU MET VAL ASN ARG THR LEU PHE SER ASN GLU MET ILE SEQRES 14 B 346 GLY GLU ILE GLN PRO ALA PRO GLU TRP THR SER GLU ARG SEQRES 15 B 346 LEU GLU TRP ILE GLU ILE ASN LYS ASP THR ARG ARG THR SEQRES 16 B 346 MET GLN GLN ASN ASN GLY TYR GLU LEU LEU GLN GLY SER SEQRES 17 B 346 THR THR VAL GLN GLY ARG LEU ILE GLY GLY CYS ILE GLU SEQRES 18 B 346 VAL LEU GLU PHE ALA LYS GLY THR GLU LEU TRP PRO GLU SEQRES 19 B 346 LYS LYS HIS TRP GLU ASP SER ILE LEU PHE PHE ALA THR SEQRES 20 B 346 SER GLU ASP HIS PRO GLU PRO SER TYR ILE LYS TYR TRP SEQRES 21 B 346 LEU ARG ASN TYR ALA ALA GLN GLY ILE LEU GLN LYS ALA SEQRES 22 B 346 LYS GLY ILE ILE PHE GLY LYS PRO LYS ASP GLU MET TYR SEQRES 23 B 346 TYR GLU GLU TYR LYS HIS GLU ILE LEU GLN VAL MET LYS SEQRES 24 B 346 GLU HIS ASN LEU GLU ASP LEU PRO ILE LEU TYR ASN LEU SEQRES 25 B 346 ASN PHE GLY ALA THR GLU PRO LYS PHE ILE LEU PRO TYR SEQRES 26 B 346 GLY SER MET ALA GLU ILE ASP CYS GLU ASN GLY SER PHE SEQRES 27 B 346 SER ILE LEU GLU SER GLY VAL GLU HET SO4 A 401 5 HET P6G A 402 45 HET EPE A 403 24 HET 1PE A 404 38 HET SBT A 405 15 HET GOL A 406 14 HET SO4 B 401 5 HET SO4 B 402 5 HET P6G B 403 45 HET EPE B 404 24 HET EDO B 405 10 HET EDO B 406 10 HET SBT B 407 15 HET GOL B 408 13 HETNAM SO4 SULFATE ION HETNAM P6G HEXAETHYLENE GLYCOL HETNAM EPE 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM SBT 2-BUTANOL HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 HETSYN EPE HEPES HETSYN 1PE PEG400 HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 3(O4 S 2-) FORMUL 4 P6G 2(C12 H26 O7) FORMUL 5 EPE 2(C8 H18 N2 O4 S) FORMUL 6 1PE C10 H22 O6 FORMUL 7 SBT 2(C4 H10 O) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 13 EDO 2(C2 H6 O2) FORMUL 17 HOH *666(H2 O) HELIX 1 AA1 GLY A 22 ASP A 26 5 5 HELIX 2 AA2 ILE A 29 VAL A 43 1 15 HELIX 3 AA3 GLY A 57 ASN A 64 1 8 HELIX 4 AA4 ASN A 64 ASP A 78 1 15 HELIX 5 AA5 ASP A 92 ILE A 100 5 9 HELIX 6 AA6 ASP A 101 GLU A 107 1 7 HELIX 7 AA7 TYR A 115 ASP A 117 5 3 HELIX 8 AA8 VAL A 118 ALA A 128 1 11 HELIX 9 AA9 ASP A 149 PHE A 161 1 13 HELIX 10 AB1 ILE A 183 LYS A 187 5 5 HELIX 11 AB2 ILE A 217 LYS A 224 1 8 HELIX 12 AB3 GLU A 231 GLU A 236 5 6 HELIX 13 AB4 GLU A 250 GLN A 264 1 15 HELIX 14 AB5 GLY A 265 LYS A 269 1 5 HELIX 15 AB6 PRO A 278 MET A 282 5 5 HELIX 16 AB7 TYR A 283 HIS A 298 1 16 HELIX 17 AB8 GLY B 22 ASP B 26 5 5 HELIX 18 AB9 ILE B 29 VAL B 43 1 15 HELIX 19 AC1 GLY B 57 ASN B 64 1 8 HELIX 20 AC2 ASN B 64 ASP B 78 1 15 HELIX 21 AC3 ASP B 92 ILE B 100 5 9 HELIX 22 AC4 ASP B 101 GLU B 107 1 7 HELIX 23 AC5 TYR B 115 ASP B 117 5 3 HELIX 24 AC6 VAL B 118 GLY B 129 1 12 HELIX 25 AC7 ASP B 149 PHE B 161 1 13 HELIX 26 AC8 ILE B 183 LYS B 187 5 5 HELIX 27 AC9 ILE B 217 LYS B 224 1 8 HELIX 28 AD1 GLU B 231 GLU B 236 5 6 HELIX 29 AD2 GLU B 250 GLN B 264 1 15 HELIX 30 AD3 ILE B 266 GLN B 268 5 3 HELIX 31 AD4 PRO B 278 MET B 282 5 5 HELIX 32 AD5 TYR B 283 HIS B 298 1 16 SHEET 1 AA1 6 THR A 47 PRO A 50 0 SHEET 2 AA1 6 ILE A 13 VAL A 17 1 N VAL A 14 O THR A 47 SHEET 3 AA1 6 VAL A 81 ALA A 86 1 O ALA A 83 N ALA A 15 SHEET 4 AA1 6 ILE A 111 GLY A 114 1 O MET A 113 N ALA A 86 SHEET 5 AA1 6 PHE A 133 TYR A 134 1 O PHE A 133 N PHE A 112 SHEET 6 AA1 6 LEU A 320 PRO A 321 -1 O LEU A 320 N TYR A 134 SHEET 1 AA2 8 GLY A 167 GLU A 168 0 SHEET 2 AA2 8 SER A 334 ILE A 337 -1 O ILE A 337 N GLY A 167 SHEET 3 AA2 8 MET A 325 ASP A 329 -1 N GLU A 327 O SER A 336 SHEET 4 AA2 8 THR A 207 CYS A 216 -1 N GLY A 210 O ALA A 326 SHEET 5 AA2 8 SER A 238 ALA A 243 1 O PHE A 241 N GLY A 215 SHEET 6 AA2 8 ALA A 270 GLY A 276 1 O LYS A 271 N SER A 238 SHEET 7 AA2 8 ILE A 305 LEU A 309 1 O LEU A 306 N ILE A 273 SHEET 8 AA2 8 GLU A 200 GLN A 203 -1 N GLU A 200 O TYR A 307 SHEET 1 AA3 2 GLU A 174 TRP A 175 0 SHEET 2 AA3 2 GLN A 194 GLN A 195 -1 O GLN A 194 N TRP A 175 SHEET 1 AA4 6 THR B 47 PRO B 50 0 SHEET 2 AA4 6 ILE B 13 VAL B 17 1 N VAL B 14 O THR B 47 SHEET 3 AA4 6 VAL B 81 ALA B 86 1 O ALA B 83 N ALA B 15 SHEET 4 AA4 6 ILE B 111 GLY B 114 1 O MET B 113 N ALA B 86 SHEET 5 AA4 6 PHE B 133 TYR B 134 1 O PHE B 133 N PHE B 112 SHEET 6 AA4 6 LEU B 320 PRO B 321 -1 O LEU B 320 N TYR B 134 SHEET 1 AA5 8 GLY B 167 GLU B 168 0 SHEET 2 AA5 8 SER B 334 ILE B 337 -1 O ILE B 337 N GLY B 167 SHEET 3 AA5 8 MET B 325 ASP B 329 -1 N GLU B 327 O SER B 336 SHEET 4 AA5 8 THR B 207 CYS B 216 -1 N GLY B 210 O ALA B 326 SHEET 5 AA5 8 SER B 238 ALA B 243 1 O PHE B 241 N GLY B 215 SHEET 6 AA5 8 ALA B 270 GLY B 276 1 O LYS B 271 N SER B 238 SHEET 7 AA5 8 ILE B 305 LEU B 309 1 O LEU B 306 N ILE B 273 SHEET 8 AA5 8 GLU B 200 GLN B 203 -1 N LEU B 202 O ILE B 305 SHEET 1 AA6 2 GLU B 174 TRP B 175 0 SHEET 2 AA6 2 GLN B 194 GLN B 195 -1 O GLN B 194 N TRP B 175 CISPEP 1 GLU A 315 PRO A 316 0 0.40 CISPEP 2 GLU B 315 PRO B 316 0 2.66 SITE 1 AC1 7 LYS A 38 ARG A 39 VAL A 146 HOH A 533 SITE 2 AC1 7 HOH A 619 HOH A 633 HOH A 718 SITE 1 AC2 14 VAL A 43 PHE A 44 VAL A 153 GLU A 154 SITE 2 AC2 14 ASN A 157 ARG A 158 SER A 162 HOH A 731 SITE 3 AC2 14 HOH A 741 PRO B 10 GLY B 11 VAL B 43 SITE 4 AC2 14 GLY B 45 P6G B 403 SITE 1 AC3 5 TYR A 62 GLN A 91 LYS B 255 ARG B 259 SITE 2 AC3 5 GLN B 293 SITE 1 AC4 7 VAL A 49 PRO A 50 MET A 51 PRO A 52 SITE 2 AC4 7 ASP A 78 ARG A 80 HOH A 777 SITE 1 AC5 6 GLY A 89 ALA A 116 GLU A 246 HOH A 556 SITE 2 AC5 6 HOH A 702 HOH A 711 SITE 1 AC6 5 TRP A 229 LYS A 232 GLN A 264 ILE A 266 SITE 2 AC6 5 LYS A 269 SITE 1 AC7 6 LYS B 38 ARG B 39 VAL B 146 HOH B 506 SITE 2 AC7 6 HOH B 609 HOH B 720 SITE 1 AC8 2 ARG B 80 HOH B 505 SITE 1 AC9 7 GLU A 42 P6G A 402 HOH A 665 VAL B 43 SITE 2 AC9 7 GLU B 154 ASN B 157 PHE B 161 SITE 1 AD1 7 LYS A 255 ARG A 259 GLN A 293 TYR B 62 SITE 2 AD1 7 GLN B 91 HOH B 513 HOH B 597 SITE 1 AD2 3 ASP B 78 ARG B 80 HOH B 505 SITE 1 AD3 1 TRP B 21 SITE 1 AD4 7 TYR A 256 GLY B 90 GLU B 218 VAL B 219 SITE 2 AD4 7 SER B 245 ASP B 247 HOH B 702 SITE 1 AD5 2 GLU B 231 LYS B 232 CRYST1 65.444 71.225 82.700 90.00 109.19 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015280 0.000000 0.005318 0.00000 SCALE2 0.000000 0.014040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012803 0.00000