data_5JYN # _entry.id 5JYN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5JYN pdb_00005jyn 10.2210/pdb5jyn/pdb WWPDB D_1000221430 ? ? BMRB 30090 ? ? # _pdbx_database_related.db_name BMRB _pdbx_database_related.details . _pdbx_database_related.db_id 30090 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 5JYN _pdbx_database_status.recvd_initial_deposition_date 2016-05-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dev, J.' 1 'Fu, Q.' 2 'Park, D.' 3 'Chen, B.' 4 'Chou, J.J.' 5 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 353 _citation.language ? _citation.page_first 172 _citation.page_last 175 _citation.title 'Structural basis for membrane anchoring of HIV-1 envelope spike.' _citation.year 2016 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.aaf7066 _citation.pdbx_database_id_PubMed 27338706 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dev, J.' 1 ? primary 'Park, D.' 2 ? primary 'Fu, Q.' 3 ? primary 'Chen, J.' 4 ? primary 'Ha, H.J.' 5 ? primary 'Ghantous, F.' 6 ? primary 'Herrmann, T.' 7 ? primary 'Chang, W.' 8 ? primary 'Liu, Z.' 9 ? primary 'Frey, G.' 10 ? primary 'Seaman, M.S.' 11 ? primary 'Chen, B.' 12 ? primary 'Chou, J.J.' 13 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Envelope glycoprotein gp160' _entity.formula_weight 4650.604 _entity.pdbx_number_of_molecules 3 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'GP41 domain residues 670-709' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code NWLWYIRIFIIIVGSLIGLRIVFAVLSLVNRVRQGYSPLS _entity_poly.pdbx_seq_one_letter_code_can NWLWYIRIFIIIVGSLIGLRIVFAVLSLVNRVRQGYSPLS _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 TRP n 1 3 LEU n 1 4 TRP n 1 5 TYR n 1 6 ILE n 1 7 ARG n 1 8 ILE n 1 9 PHE n 1 10 ILE n 1 11 ILE n 1 12 ILE n 1 13 VAL n 1 14 GLY n 1 15 SER n 1 16 LEU n 1 17 ILE n 1 18 GLY n 1 19 LEU n 1 20 ARG n 1 21 ILE n 1 22 VAL n 1 23 PHE n 1 24 ALA n 1 25 VAL n 1 26 LEU n 1 27 SER n 1 28 LEU n 1 29 VAL n 1 30 ASN n 1 31 ARG n 1 32 VAL n 1 33 ARG n 1 34 GLN n 1 35 GLY n 1 36 TYR n 1 37 SER n 1 38 PRO n 1 39 LEU n 1 40 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 40 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene env _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pMM-LR6 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q74849_9HIV1 _struct_ref.pdbx_db_accession Q74849 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code NWLWYIRIFIIIVGSLIGLRIVFAVLSLVNRVRQGYSPLS _struct_ref.pdbx_align_begin 670 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5JYN A 1 ? 40 ? Q74849 670 ? 709 ? 677 716 2 1 5JYN B 1 ? 40 ? Q74849 670 ? 709 ? 677 716 3 1 5JYN C 1 ? 40 ? Q74849 670 ? 709 ? 677 716 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '3D TROSY HNCA' 1 isotropic 2 1 1 '3D TROSY HNCOCA' 1 isotropic 3 1 1 '3D TROSY HNCACO' 1 isotropic 4 1 1 '3D TROSY HNCO' 1 isotropic 5 1 2 '3D 15N NOESY-TROSY-HSQC' 3 isotropic 6 1 2 '3D 13C NOESY-HSQC (Methyls)' 3 isotropic 7 1 3 '3D 15N NOESY-TROSY-HSQC (long mixing time)' 2 isotropic 8 1 1 '2D 15N TROSY-HSQC for GdDOTA titration' 1 isotropic 9 1 4 '3D 15N NOESY-TROSY-HSQC (short mixing time)' 1 isotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.7 _pdbx_nmr_exptl_sample_conditions.ionic_strength 50 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err 10 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label ambient _pdbx_nmr_exptl_sample_conditions.pH_err 0.1 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err 0.1 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 ;0.8 mM [U-13C; U-15N; 85%-2H] HIV-1 gp41 Transmembrane Domain, 60 mM regular 1,2-Dimyristoyl-sn-Glycero-3-Phosphocholine (DMPC), 120 mM regular 1,2-Dihexanoyl-sn-Glycero-3-Phosphocholine (DHPC), 25 mM regular MES, 0.1 % regular NaN3, 95% H2O/5% D2O ; '95% H2O/5% D2O' 'triple labeled sample' bicelle 'For assignment of protein backbone resonances' 2 ;0.8 mM [U-13C; U-15N] HIV-1 gp41 Transmembrane Domain, 60 mM acyl chains 2H labeled 1,2-Dimyristoyl-sn-Glycero-3-Phosphocholine (DMPC), 120 mM acyl chains 2H labeled 1,2-Dihexanoyl-sn-Glycero-3-Phosphocholine (DHPC), 25 mM regular MES, 0.1 % regular NaN3, 95% H2O/5% D2O ; '95% H2O/5% D2O' 'double labeled sample' bicelle 'For recording 3D 15N-edited and 13C-edited NOESYs' 3 ;0.4 mM [U-15N; U-2H] HIV-1 gp41 Transmembrane Domain, 0.4 mM [15% 13C] HIV-1 gp41 Transmembrane Domain, 60 mM acyl chains 2H labeled 1,2-Dimyristoyl-sn-Glycero-3-Phosphocholine (DMPC), 120 mM acyl chains 2H labeled 1,2-Dihexanoyl-sn-Glycero-3-Phosphocholine (DHPC), 25 mM regular MES, 0.1 % regular NaN3, 95% H2O/5% D2O ; '95% H2O/5% D2O' 'mixed labeled sample' bicelle 'For assigning inter-molecular NOEs' 4 ;0.8 mM [U-15N] HIV-1 gp41 Transmembrane Domain, 60 mM acyl chains 2H labeled 1,2-Dimyristoyl-sn-Glycero-3-Phosphocholine (DMPC), 120 mM acyl chains 2H labeled 1,2-Dihexanoyl-sn-Glycero-3-Phosphocholine (DHPC), 25 mM regular MES, 0.1 % regular NaN3, 95% H2O/5% D2O ; '95% H2O/5% D2O' '15N labeled sample' bicelle 'For assigning Arg sidechains' # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE II' ? Bruker 600 'cryogenic probe' 2 'AVANCE II' ? Bruker 750 'cryogenic probe' 3 'AVANCE III' ? Bruker 900 'cryogenic probe' # _pdbx_nmr_refine.entry_id 5JYN _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 2 # _pdbx_nmr_ensemble.entry_id 5JYN _pdbx_nmr_ensemble.conformers_calculated_total_number 150 _pdbx_nmr_ensemble.conformers_submitted_total_number 15 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 5JYN _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 2 'structure calculation' XPLOR-NIH 2.42 'G. Marius Clore , Guillermo Bermejo, , John Kuszewski, Charles D. Schwieters, and Nico Tjandra' 3 'chemical shift assignment' CcpNMR ? CCPN 5 processing NMRPipe ? 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' 6 'data analysis' XEASY ? 'Bartels et al.' 7 'data analysis' TALOS ? 'Cornilescu, Delaglio and Bax' 1 refinement XPLOR-NIH 2.42 'G. Marius Clore , Guillermo Bermejo, , John Kuszewski, Charles D. Schwieters, and Nico Tjandra' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5JYN _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 5JYN _struct.title 'Structure of the transmembrane domain of HIV-1 gp41 in bicelle' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5JYN _struct_keywords.text 'transmembrane domain, lipid bilayer, transmembrane trimer, VIRAL PROTEIN' _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 TRP A 2 ? ARG A 20 ? TRP A 678 ARG A 696 1 ? 19 HELX_P HELX_P2 AA2 ILE A 21 ? GLY A 35 ? ILE A 697 GLY A 711 1 ? 15 HELX_P HELX_P3 AA3 TRP B 2 ? ILE B 21 ? TRP B 678 ILE B 697 1 ? 20 HELX_P HELX_P4 AA4 VAL B 22 ? TYR B 36 ? VAL B 698 TYR B 712 1 ? 15 HELX_P HELX_P5 AA5 TRP C 2 ? ARG C 20 ? TRP C 678 ARG C 696 1 ? 19 HELX_P HELX_P6 AA6 VAL C 22 ? GLN C 34 ? VAL C 698 GLN C 710 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 5JYN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 677 677 ASN ASN A . n A 1 2 TRP 2 678 678 TRP TRP A . n A 1 3 LEU 3 679 679 LEU LEU A . n A 1 4 TRP 4 680 680 TRP TRP A . n A 1 5 TYR 5 681 681 TYR TYR A . n A 1 6 ILE 6 682 682 ILE ILE A . n A 1 7 ARG 7 683 683 ARG ARG A . n A 1 8 ILE 8 684 684 ILE ILE A . n A 1 9 PHE 9 685 685 PHE PHE A . n A 1 10 ILE 10 686 686 ILE ILE A . n A 1 11 ILE 11 687 687 ILE ILE A . n A 1 12 ILE 12 688 688 ILE ILE A . n A 1 13 VAL 13 689 689 VAL VAL A . n A 1 14 GLY 14 690 690 GLY GLY A . n A 1 15 SER 15 691 691 SER SER A . n A 1 16 LEU 16 692 692 LEU LEU A . n A 1 17 ILE 17 693 693 ILE ILE A . n A 1 18 GLY 18 694 694 GLY GLY A . n A 1 19 LEU 19 695 695 LEU LEU A . n A 1 20 ARG 20 696 696 ARG ARG A . n A 1 21 ILE 21 697 697 ILE ILE A . n A 1 22 VAL 22 698 698 VAL VAL A . n A 1 23 PHE 23 699 699 PHE PHE A . n A 1 24 ALA 24 700 700 ALA ALA A . n A 1 25 VAL 25 701 701 VAL VAL A . n A 1 26 LEU 26 702 702 LEU LEU A . n A 1 27 SER 27 703 703 SER SER A . n A 1 28 LEU 28 704 704 LEU LEU A . n A 1 29 VAL 29 705 705 VAL VAL A . n A 1 30 ASN 30 706 706 ASN ASN A . n A 1 31 ARG 31 707 707 ARG ARG A . n A 1 32 VAL 32 708 708 VAL VAL A . n A 1 33 ARG 33 709 709 ARG ARG A . n A 1 34 GLN 34 710 710 GLN GLN A . n A 1 35 GLY 35 711 711 GLY GLY A . n A 1 36 TYR 36 712 712 TYR TYR A . n A 1 37 SER 37 713 713 SER SER A . n A 1 38 PRO 38 714 714 PRO PRO A . n A 1 39 LEU 39 715 715 LEU LEU A . n A 1 40 SER 40 716 716 SER SER A . n B 1 1 ASN 1 677 677 ASN ASN B . n B 1 2 TRP 2 678 678 TRP TRP B . n B 1 3 LEU 3 679 679 LEU LEU B . n B 1 4 TRP 4 680 680 TRP TRP B . n B 1 5 TYR 5 681 681 TYR TYR B . n B 1 6 ILE 6 682 682 ILE ILE B . n B 1 7 ARG 7 683 683 ARG ARG B . n B 1 8 ILE 8 684 684 ILE ILE B . n B 1 9 PHE 9 685 685 PHE PHE B . n B 1 10 ILE 10 686 686 ILE ILE B . n B 1 11 ILE 11 687 687 ILE ILE B . n B 1 12 ILE 12 688 688 ILE ILE B . n B 1 13 VAL 13 689 689 VAL VAL B . n B 1 14 GLY 14 690 690 GLY GLY B . n B 1 15 SER 15 691 691 SER SER B . n B 1 16 LEU 16 692 692 LEU LEU B . n B 1 17 ILE 17 693 693 ILE ILE B . n B 1 18 GLY 18 694 694 GLY GLY B . n B 1 19 LEU 19 695 695 LEU LEU B . n B 1 20 ARG 20 696 696 ARG ARG B . n B 1 21 ILE 21 697 697 ILE ILE B . n B 1 22 VAL 22 698 698 VAL VAL B . n B 1 23 PHE 23 699 699 PHE PHE B . n B 1 24 ALA 24 700 700 ALA ALA B . n B 1 25 VAL 25 701 701 VAL VAL B . n B 1 26 LEU 26 702 702 LEU LEU B . n B 1 27 SER 27 703 703 SER SER B . n B 1 28 LEU 28 704 704 LEU LEU B . n B 1 29 VAL 29 705 705 VAL VAL B . n B 1 30 ASN 30 706 706 ASN ASN B . n B 1 31 ARG 31 707 707 ARG ARG B . n B 1 32 VAL 32 708 708 VAL VAL B . n B 1 33 ARG 33 709 709 ARG ARG B . n B 1 34 GLN 34 710 710 GLN GLN B . n B 1 35 GLY 35 711 711 GLY GLY B . n B 1 36 TYR 36 712 712 TYR TYR B . n B 1 37 SER 37 713 713 SER SER B . n B 1 38 PRO 38 714 714 PRO PRO B . n B 1 39 LEU 39 715 715 LEU LEU B . n B 1 40 SER 40 716 716 SER SER B . n C 1 1 ASN 1 677 677 ASN ASN C . n C 1 2 TRP 2 678 678 TRP TRP C . n C 1 3 LEU 3 679 679 LEU LEU C . n C 1 4 TRP 4 680 680 TRP TRP C . n C 1 5 TYR 5 681 681 TYR TYR C . n C 1 6 ILE 6 682 682 ILE ILE C . n C 1 7 ARG 7 683 683 ARG ARG C . n C 1 8 ILE 8 684 684 ILE ILE C . n C 1 9 PHE 9 685 685 PHE PHE C . n C 1 10 ILE 10 686 686 ILE ILE C . n C 1 11 ILE 11 687 687 ILE ILE C . n C 1 12 ILE 12 688 688 ILE ILE C . n C 1 13 VAL 13 689 689 VAL VAL C . n C 1 14 GLY 14 690 690 GLY GLY C . n C 1 15 SER 15 691 691 SER SER C . n C 1 16 LEU 16 692 692 LEU LEU C . n C 1 17 ILE 17 693 693 ILE ILE C . n C 1 18 GLY 18 694 694 GLY GLY C . n C 1 19 LEU 19 695 695 LEU LEU C . n C 1 20 ARG 20 696 696 ARG ARG C . n C 1 21 ILE 21 697 697 ILE ILE C . n C 1 22 VAL 22 698 698 VAL VAL C . n C 1 23 PHE 23 699 699 PHE PHE C . n C 1 24 ALA 24 700 700 ALA ALA C . n C 1 25 VAL 25 701 701 VAL VAL C . n C 1 26 LEU 26 702 702 LEU LEU C . n C 1 27 SER 27 703 703 SER SER C . n C 1 28 LEU 28 704 704 LEU LEU C . n C 1 29 VAL 29 705 705 VAL VAL C . n C 1 30 ASN 30 706 706 ASN ASN C . n C 1 31 ARG 31 707 707 ARG ARG C . n C 1 32 VAL 32 708 708 VAL VAL C . n C 1 33 ARG 33 709 709 ARG ARG C . n C 1 34 GLN 34 710 710 GLN GLN C . n C 1 35 GLY 35 711 711 GLY GLY C . n C 1 36 TYR 36 712 712 TYR TYR C . n C 1 37 SER 37 713 713 SER SER C . n C 1 38 PRO 38 714 714 PRO PRO C . n C 1 39 LEU 39 715 715 LEU LEU C . n C 1 40 SER 40 716 716 SER SER C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3740 ? 1 MORE -31 ? 1 'SSA (A^2)' 9870 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-06-29 2 'Structure model' 1 1 2016-07-06 3 'Structure model' 1 2 2016-07-20 4 'Structure model' 1 3 2017-09-20 5 'Structure model' 1 4 2019-12-04 6 'Structure model' 1 5 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Structure summary' 6 5 'Structure model' 'Author supporting evidence' 7 5 'Structure model' 'Data collection' 8 6 'Structure model' 'Database references' 9 6 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' citation 2 4 'Structure model' entity 3 4 'Structure model' pdbx_audit_support 4 5 'Structure model' pdbx_audit_support 5 5 'Structure model' pdbx_nmr_spectrometer 6 6 'Structure model' database_2 7 6 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_citation.journal_id_CSD' 2 4 'Structure model' '_entity.pdbx_number_of_molecules' 3 4 'Structure model' '_pdbx_audit_support.funding_organization' 4 5 'Structure model' '_pdbx_audit_support.funding_organization' 5 5 'Structure model' '_pdbx_nmr_spectrometer.model' 6 6 'Structure model' '_database_2.pdbx_DOI' 7 6 'Structure model' '_database_2.pdbx_database_accession' 8 6 'Structure model' '_pdbx_database_status.status_code_nmr_data' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'HIV-1 gp41 Transmembrane Domain' 0.8 ? mM '[U-13C; U-15N; 85%-2H]' 1 '1,2-Dimyristoyl-sn-Glycero-3-Phosphocholine (DMPC)' 60 ? mM regular 1 '1,2-Dihexanoyl-sn-Glycero-3-Phosphocholine (DHPC)' 120 ? mM regular 1 MES 25 ? mM regular 1 NaN3 0.1 ? % regular 2 'HIV-1 gp41 Transmembrane Domain' 0.8 ? mM '[U-13C; U-15N]' 2 '1,2-Dimyristoyl-sn-Glycero-3-Phosphocholine (DMPC)' 60 ? mM 'acyl chains 2H labeled' 2 '1,2-Dihexanoyl-sn-Glycero-3-Phosphocholine (DHPC)' 120 ? mM 'acyl chains 2H labeled' 2 MES 25 ? mM regular 2 NaN3 0.1 ? % regular 3 'HIV-1 gp41 Transmembrane Domain-1' 0.4 ? mM '[U-15N; U-2H]' 3 'HIV-1 gp41 Transmembrane Domain-2' 0.4 ? mM '[15% 13C]' 3 '1,2-Dimyristoyl-sn-Glycero-3-Phosphocholine (DMPC)' 60 ? mM 'acyl chains 2H labeled' 3 '1,2-Dihexanoyl-sn-Glycero-3-Phosphocholine (DHPC)' 120 ? mM 'acyl chains 2H labeled' 3 MES 25 ? mM regular 3 NaN3 0.1 ? % regular 4 'HIV-1 gp41 Transmembrane Domain' 0.8 ? mM '[U-15N]' 4 '1,2-Dimyristoyl-sn-Glycero-3-Phosphocholine (DMPC)' 60 ? mM 'acyl chains 2H labeled' 4 '1,2-Dihexanoyl-sn-Glycero-3-Phosphocholine (DHPC)' 120 ? mM 'acyl chains 2H labeled' 4 MES 25 ? mM regular 4 NaN3 0.1 ? % regular # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 8 CB A TYR 681 ? ? CG A TYR 681 ? ? 1.602 1.512 0.090 0.015 N 2 8 CB C TYR 681 ? ? CG C TYR 681 ? ? 1.602 1.512 0.090 0.015 N 3 10 CB A PHE 699 ? ? CG A PHE 699 ? ? 1.612 1.509 0.103 0.017 N 4 12 CB C TYR 681 ? ? CG C TYR 681 ? ? 1.606 1.512 0.094 0.015 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 5 CB C TYR 712 ? ? CG C TYR 712 ? ? CD2 C TYR 712 ? ? 117.26 121.00 -3.74 0.60 N 2 5 CB C TYR 712 ? ? CG C TYR 712 ? ? CD1 C TYR 712 ? ? 124.87 121.00 3.87 0.60 N 3 12 CB C TYR 712 ? ? CG C TYR 712 ? ? CD2 C TYR 712 ? ? 124.98 121.00 3.98 0.60 N 4 12 CB C TYR 712 ? ? CG C TYR 712 ? ? CD1 C TYR 712 ? ? 117.23 121.00 -3.77 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU B 715 ? ? -46.56 165.80 2 1 TRP C 678 ? ? 56.55 -56.14 3 2 LEU A 715 ? ? -61.51 -117.87 4 2 TRP C 678 ? ? -169.06 -40.44 5 2 LEU C 715 ? ? 65.28 176.81 6 3 TRP A 678 ? ? -156.65 -76.94 7 3 TRP C 678 ? ? -170.83 -30.00 8 3 LEU C 715 ? ? 65.56 -67.87 9 4 TRP A 678 ? ? 54.87 102.74 10 4 LEU A 715 ? ? 50.05 70.63 11 4 LEU B 715 ? ? -58.64 170.15 12 4 TRP C 678 ? ? -166.31 -71.30 13 5 TRP A 678 ? ? -166.90 -74.21 14 5 LEU A 715 ? ? 57.95 -79.01 15 5 TRP B 678 ? ? 59.07 -30.44 16 5 LEU B 715 ? ? -144.93 -57.09 17 5 LEU C 715 ? ? 55.90 79.46 18 6 TRP A 678 ? ? -165.30 -77.66 19 6 TRP B 678 ? ? -165.35 -47.31 20 6 TRP C 678 ? ? 58.59 113.10 21 6 LEU C 715 ? ? -56.94 90.89 22 7 TRP A 678 ? ? 57.58 -87.21 23 7 TRP B 678 ? ? -166.17 -74.18 24 7 LEU C 715 ? ? 51.92 -101.39 25 8 LEU A 715 ? ? -97.87 42.44 26 8 LEU B 715 ? ? 60.81 143.74 27 9 LEU A 715 ? ? 63.10 149.25 28 9 LEU B 715 ? ? 59.63 123.80 29 9 LEU C 715 ? ? 62.73 148.94 30 10 LEU A 715 ? ? -68.10 81.83 31 10 TRP C 678 ? ? -82.96 -152.46 32 10 LEU C 715 ? ? -61.97 94.64 33 11 TRP A 678 ? ? -170.01 -78.02 34 11 LEU B 715 ? ? -144.19 -57.02 35 11 LEU C 715 ? ? -158.63 -49.93 36 12 TRP A 678 ? ? -165.87 -13.74 37 12 TRP B 678 ? ? 54.92 105.52 38 13 LEU A 715 ? ? 62.19 76.88 39 13 LEU B 715 ? ? -86.73 -77.09 40 13 TRP C 678 ? ? -166.74 -106.20 41 14 TRP A 678 ? ? -122.58 -104.97 42 14 LEU A 715 ? ? 59.55 110.55 43 14 TRP C 678 ? ? 67.93 -59.86 44 15 TRP A 678 ? ? 60.22 128.30 45 15 LEU C 715 ? ? -65.81 -167.14 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 14 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 696 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.077 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)' 'United States' HL103526 1 CAS China XDB08030301 2 #