HEADER FLUORESCENT PROTEIN 17-MAY-16 5JZK TITLE THE STRUCTURE OF ULTRA STABLE GREEN FLUORESCENT PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 3-238; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS GREEN FLUORESCENT PROTEIN, GFP, THERMOSTABLE, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.J.YONG,N.J.GUNN,D.J.SCOTT,M.D.W.GRIFFIN REVDAT 4 15-NOV-23 5JZK 1 REMARK REVDAT 3 27-SEP-23 5JZK 1 REMARK REVDAT 2 19-DEC-18 5JZK 1 JRNL REVDAT 1 06-DEC-17 5JZK 0 JRNL AUTH D.J.SCOTT,N.J.GUNN,K.J.YONG,V.C.WIMMER,N.A.VELDHUIS, JRNL AUTH 2 L.M.CHALLIS,M.HAIDAR,S.PETROU,R.A.D.BATHGATE,M.D.W.GRIFFIN JRNL TITL A NOVEL ULTRA-STABLE, MONOMERIC GREEN FLUORESCENT PROTEIN JRNL TITL 2 FOR DIRECT VOLUMETRIC IMAGING OF WHOLE ORGANS USING CLARITY. JRNL REF SCI REP V. 8 667 2018 JRNL REFN ESSN 2045-2322 JRNL PMID 29330459 JRNL DOI 10.1038/S41598-017-18045-Y REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 39749 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.144 REMARK 3 R VALUE (WORKING SET) : 0.142 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2035 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2902 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3730 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.47000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : -1.54000 REMARK 3 B12 (A**2) : 0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.117 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.647 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3875 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3595 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5239 ; 1.572 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8287 ; 0.754 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 472 ; 6.678 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;33.129 ;24.703 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 644 ;13.052 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;14.378 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 569 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4395 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 884 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1888 ; 1.486 ; 2.239 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1887 ; 1.484 ; 2.238 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2360 ; 2.165 ; 3.344 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2361 ; 2.165 ; 3.346 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1987 ; 2.766 ; 2.620 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1987 ; 2.763 ; 2.619 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2880 ; 4.342 ; 3.779 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4467 ; 7.765 ;20.016 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4468 ; 7.766 ;20.025 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 1.7577 29.6977 25.9549 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.0435 REMARK 3 T33: 0.0230 T12: 0.0175 REMARK 3 T13: 0.0114 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.9776 L22: 0.4914 REMARK 3 L33: 1.8610 L12: 0.0066 REMARK 3 L13: -0.7481 L23: -0.1573 REMARK 3 S TENSOR REMARK 3 S11: 0.0189 S12: -0.0862 S13: -0.0500 REMARK 3 S21: -0.0182 S22: -0.0240 S23: -0.0382 REMARK 3 S31: 0.1089 S32: 0.1273 S33: 0.0051 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 237 REMARK 3 ORIGIN FOR THE GROUP (A): 2.0313 46.5480 2.2303 REMARK 3 T TENSOR REMARK 3 T11: 0.0198 T22: 0.0498 REMARK 3 T33: 0.0247 T12: 0.0217 REMARK 3 T13: -0.0035 T23: -0.0122 REMARK 3 L TENSOR REMARK 3 L11: 1.8930 L22: 0.8323 REMARK 3 L33: 1.3903 L12: -0.4536 REMARK 3 L13: -0.0276 L23: -0.3789 REMARK 3 S TENSOR REMARK 3 S11: -0.0742 S12: -0.0970 S13: 0.1897 REMARK 3 S21: 0.0165 S22: 0.0255 S23: -0.0837 REMARK 3 S31: 0.0254 S32: 0.0698 S33: 0.0487 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220238. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41787 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.220 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : 1.05900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2B3P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % W/V PEG 3350, 0.1 M BIS-TRIS REMARK 280 PROPANE PH 6.5, 0.2 M SODIUM NITRATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 68.59100 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 39.60103 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 49.21567 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 68.59100 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 39.60103 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 49.21567 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 68.59100 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 39.60103 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 49.21567 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 68.59100 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 39.60103 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 49.21567 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 68.59100 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 39.60103 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 49.21567 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 68.59100 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 39.60103 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 49.21567 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.20206 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 98.43133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 79.20206 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 98.43133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 79.20206 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 98.43133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 79.20206 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 98.43133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 79.20206 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 98.43133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 79.20206 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 98.43133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 GLY A 0 REMARK 465 MET B -10 REMARK 465 ARG B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLY B 0 REMARK 465 SER B 1 REMARK 465 LYS B 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 156 CG CD CE NZ REMARK 470 LYS B 158 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 133 O HOH A 401 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 577 O HOH A 577 4555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -157.36 -150.28 REMARK 500 ASP B 103 -156.45 -153.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JZL RELATED DB: PDB DBREF1 5JZK A 3 238 UNP A0A059PIQ0_AEQVI DBREF2 5JZK A A0A059PIQ0 3 238 DBREF1 5JZK B 3 238 UNP A0A059PIQ0_AEQVI DBREF2 5JZK B A0A059PIQ0 3 238 SEQADV 5JZK MET A -10 UNP A0A059PIQ INITIATING METHIONINE SEQADV 5JZK ARG A -9 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK GLY A -8 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK SER A -7 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK HIS A -6 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK HIS A -5 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK HIS A -4 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK HIS A -3 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK HIS A -2 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK HIS A -1 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK GLY A 0 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK SER A 1 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK SER A 2 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK ARG A 30 UNP A0A059PIQ SER 30 CONFLICT SEQADV 5JZK CRO A UNP A0A059PIQ THR 65 CHROMOPHORE SEQADV 5JZK CRO A UNP A0A059PIQ TYR 66 CHROMOPHORE SEQADV 5JZK CRO A 66 UNP A0A059PIQ GLY 67 CHROMOPHORE SEQADV 5JZK LEU A 69 UNP A0A059PIQ GLN 69 CONFLICT SEQADV 5JZK SER A 72 UNP A0A059PIQ ALA 72 CONFLICT SEQADV 5JZK ARG A 80 UNP A0A059PIQ GLN 80 CONFLICT SEQADV 5JZK TYR A 164 UNP A0A059PIQ ASN 164 CONFLICT SEQADV 5JZK VAL A 206 UNP A0A059PIQ ALA 206 CONFLICT SEQADV 5JZK MET B -10 UNP A0A059PIQ INITIATING METHIONINE SEQADV 5JZK ARG B -9 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK GLY B -8 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK SER B -7 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK HIS B -6 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK HIS B -5 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK HIS B -4 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK HIS B -3 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK HIS B -2 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK HIS B -1 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK GLY B 0 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK SER B 1 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK SER B 2 UNP A0A059PIQ EXPRESSION TAG SEQADV 5JZK ARG B 30 UNP A0A059PIQ SER 30 CONFLICT SEQADV 5JZK CRO B UNP A0A059PIQ THR 65 CHROMOPHORE SEQADV 5JZK CRO B UNP A0A059PIQ TYR 66 CHROMOPHORE SEQADV 5JZK CRO B 66 UNP A0A059PIQ GLY 67 CHROMOPHORE SEQADV 5JZK LEU B 69 UNP A0A059PIQ GLN 69 CONFLICT SEQADV 5JZK SER B 72 UNP A0A059PIQ ALA 72 CONFLICT SEQADV 5JZK ARG B 80 UNP A0A059PIQ GLN 80 CONFLICT SEQADV 5JZK TYR B 164 UNP A0A059PIQ ASN 164 CONFLICT SEQADV 5JZK VAL B 206 UNP A0A059PIQ ALA 206 CONFLICT SEQRES 1 A 247 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 A 247 LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO ILE LEU SEQRES 3 A 247 VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS PHE SER SEQRES 4 A 247 VAL ARG GLY GLU GLY GLU GLY ASP ALA THR ASN GLY LYS SEQRES 5 A 247 LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS LEU PRO SEQRES 6 A 247 VAL PRO TRP PRO THR LEU VAL THR THR LEU CRO VAL LEU SEQRES 7 A 247 CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG HIS ASP SEQRES 8 A 247 PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL GLN GLU SEQRES 9 A 247 ARG THR ILE SER PHE LYS ASP ASP GLY THR TYR LYS THR SEQRES 10 A 247 ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU VAL ASN SEQRES 11 A 247 ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU ASP GLY SEQRES 12 A 247 ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN PHE ASN SER SEQRES 13 A 247 HIS ASN VAL TYR ILE THR ALA ASP LYS GLN LYS ASN GLY SEQRES 14 A 247 ILE LYS ALA TYR PHE LYS ILE ARG HIS ASN VAL GLU ASP SEQRES 15 A 247 GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN ASN THR SEQRES 16 A 247 PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN HIS SEQRES 17 A 247 TYR LEU SER THR GLN SER VAL LEU SER LYS ASP PRO ASN SEQRES 18 A 247 GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE VAL THR SEQRES 19 A 247 ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU TYR LYS SEQRES 1 B 247 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER SER SEQRES 2 B 247 LYS GLY GLU GLU LEU PHE THR GLY VAL VAL PRO ILE LEU SEQRES 3 B 247 VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS LYS PHE SER SEQRES 4 B 247 VAL ARG GLY GLU GLY GLU GLY ASP ALA THR ASN GLY LYS SEQRES 5 B 247 LEU THR LEU LYS PHE ILE CYS THR THR GLY LYS LEU PRO SEQRES 6 B 247 VAL PRO TRP PRO THR LEU VAL THR THR LEU CRO VAL LEU SEQRES 7 B 247 CYS PHE SER ARG TYR PRO ASP HIS MET LYS ARG HIS ASP SEQRES 8 B 247 PHE PHE LYS SER ALA MET PRO GLU GLY TYR VAL GLN GLU SEQRES 9 B 247 ARG THR ILE SER PHE LYS ASP ASP GLY THR TYR LYS THR SEQRES 10 B 247 ARG ALA GLU VAL LYS PHE GLU GLY ASP THR LEU VAL ASN SEQRES 11 B 247 ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS GLU ASP GLY SEQRES 12 B 247 ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN PHE ASN SER SEQRES 13 B 247 HIS ASN VAL TYR ILE THR ALA ASP LYS GLN LYS ASN GLY SEQRES 14 B 247 ILE LYS ALA TYR PHE LYS ILE ARG HIS ASN VAL GLU ASP SEQRES 15 B 247 GLY SER VAL GLN LEU ALA ASP HIS TYR GLN GLN ASN THR SEQRES 16 B 247 PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO ASP ASN HIS SEQRES 17 B 247 TYR LEU SER THR GLN SER VAL LEU SER LYS ASP PRO ASN SEQRES 18 B 247 GLU LYS ARG ASP HIS MET VAL LEU LEU GLU PHE VAL THR SEQRES 19 B 247 ALA ALA GLY ILE THR HIS GLY MET ASP GLU LEU TYR LYS MODRES 5JZK CRO A 66 GLY CHROMOPHORE MODRES 5JZK CRO B 66 GLY CHROMOPHORE HET CRO A 66 22 HET CRO B 66 22 HET NO3 A 301 4 HET NO3 A 302 4 HET EDO A 303 4 HET CL A 304 1 HET NO3 B 301 4 HET NO3 B 302 4 HET GOL B 303 6 HET EDO B 304 4 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM NO3 NITRATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN CRO PEPTIDE DERIVED CHROMOPHORE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CRO 2(C15 H17 N3 O5) FORMUL 3 NO3 4(N O3 1-) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 6 CL CL 1- FORMUL 9 GOL C3 H8 O3 FORMUL 11 HOH *380(H2 O) HELIX 1 AA1 LYS A 3 THR A 9 5 7 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 SER A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 LYS A 156 ASN A 159 5 4 HELIX 7 AA7 HIS A 231 TYR A 237 1 7 HELIX 8 AA8 LYS B 3 THR B 9 5 7 HELIX 9 AA9 PRO B 56 VAL B 61 5 6 HELIX 10 AB1 VAL B 68 SER B 72 5 5 HELIX 11 AB2 PRO B 75 HIS B 81 5 7 HELIX 12 AB3 ASP B 82 ALA B 87 1 6 HELIX 13 AB4 LYS B 156 ASN B 159 5 4 HELIX 14 AB5 HIS B 231 TYR B 237 1 7 SHEET 1 AA112 VAL A 11 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 AA112 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 AA112 HIS A 148 ASP A 155 -1 N HIS A 148 O THR A 203 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O GLY A 160 N ASP A 155 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O GLN A 177 N HIS A 169 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 AA112 THR A 105 GLU A 115 -1 O TYR A 106 N ILE A 98 SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 11 VAL A 22 1 N ASP A 21 O GLY A 127 SHEET 1 AA212 VAL B 12 VAL B 22 0 SHEET 2 AA212 HIS B 25 ASP B 36 -1 O PHE B 27 N GLY B 20 SHEET 3 AA212 LYS B 41 CYS B 48 -1 O LYS B 41 N ASP B 36 SHEET 4 AA212 HIS B 217 ALA B 227 -1 O MET B 218 N PHE B 46 SHEET 5 AA212 HIS B 199 SER B 208 -1 N SER B 202 O THR B 225 SHEET 6 AA212 HIS B 148 ASP B 155 -1 N ILE B 152 O HIS B 199 SHEET 7 AA212 GLY B 160 ASN B 170 -1 O GLY B 160 N ASP B 155 SHEET 8 AA212 VAL B 176 PRO B 187 -1 O GLN B 177 N HIS B 169 SHEET 9 AA212 TYR B 92 PHE B 100 -1 N VAL B 93 O THR B 186 SHEET 10 AA212 THR B 105 GLU B 115 -1 O TYR B 106 N ILE B 98 SHEET 11 AA212 THR B 118 ILE B 128 -1 O VAL B 120 N LYS B 113 SHEET 12 AA212 VAL B 12 VAL B 22 1 N ASP B 21 O GLY B 127 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.44 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.44 LINK C LEU B 64 N1 CRO B 66 1555 1555 1.44 LINK C3 CRO B 66 N VAL B 68 1555 1555 1.52 CISPEP 1 MET A 88 PRO A 89 0 6.05 CISPEP 2 MET B 88 PRO B 89 0 12.53 SITE 1 AC1 8 ASN A 144 PHE A 145 VAL A 206 LEU A 207 SITE 2 AC1 8 HOH A 498 HOH A 504 HOH A 529 LYS B 41 SITE 1 AC2 6 GLU A 95 THR A 97 TYR A 182 GLN A 183 SITE 2 AC2 6 GLN A 184 HOH A 515 SITE 1 AC3 3 ARG A 109 ARG A 122 GLU A 124 SITE 1 AC4 5 TRP A 57 PRO A 58 HOH A 455 HOH A 522 SITE 2 AC4 5 HOH A 525 SITE 1 AC5 7 LYS A 41 HOH A 442 ASN B 144 PHE B 145 SITE 2 AC5 7 VAL B 206 LEU B 207 HOH B 504 SITE 1 AC6 5 GLU B 95 THR B 97 TYR B 182 GLN B 183 SITE 2 AC6 5 GLN B 184 SITE 1 AC7 5 ASP B 210 ASN B 212 HOH B 406 HOH B 407 SITE 2 AC7 5 HOH B 437 SITE 1 AC8 4 ARG B 109 ARG B 122 GLU B 124 HOH B 413 CRYST1 137.182 137.182 147.647 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007290 0.004209 0.000000 0.00000 SCALE2 0.000000 0.008417 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006773 0.00000