data_5JZQ # _entry.id 5JZQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5JZQ pdb_00005jzq 10.2210/pdb5jzq/pdb WWPDB D_1000218440 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-11-09 2 'Structure model' 1 1 2016-12-21 3 'Structure model' 1 2 2018-08-08 4 'Structure model' 1 3 2024-05-08 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' pdbx_related_exp_data_set 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_struct_conn_angle 6 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_pdbx_related_exp_data_set.data_reference' 2 3 'Structure model' '_pdbx_related_exp_data_set.metadata_reference' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 24 4 'Structure model' '_pdbx_struct_conn_angle.value' 25 4 'Structure model' '_struct_conn.pdbx_dist_value' 26 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 27 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 41 4 'Structure model' '_struct_conn.ptnr2_symmetry' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5JZQ _pdbx_database_status.recvd_initial_deposition_date 2016-05-17 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type PDB . 1VTU unspecified PDB . 3P4J unspecified PDB . 1ICK unspecified PDB . 4HIF unspecified PDB . 4HIG unspecified PDB . 4R15 unspecified PDB . 5EBI unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Drozdzal, P.' 1 ? 'Gilski, M.' 2 ? 'Jaskolski, M.' 3 ? # loop_ _citation.abstract _citation.abstract_id_CAS _citation.book_id_ISBN _citation.book_publisher _citation.book_publisher_city _citation.book_title _citation.coordinate_linkage _citation.country _citation.database_id_Medline _citation.details _citation.id _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_full _citation.journal_issue _citation.journal_volume _citation.language _citation.page_first _citation.page_last _citation.title _citation.year _citation.database_id_CSD _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.unpublished_flag ? ? ? ? ? ? ? ? ? ? primary 'Acta Crystallogr D Struct Biol' ? ? 2059-7983 ? ? 72 ? 1203 1211 'Ultrahigh-resolution centrosymmetric crystal structure of Z-DNA reveals the massive presence of alternate conformations.' 2016 ? 10.1107/S205979831601679X 27841753 ? ? ? ? ? ? ? ? US ? ? 1 'J. Am. Chem. Soc.' JACSAT 0004 0002-7863 ? ? 115 ? 10432 10433 'Structural characteristics of enantiomorphic DNA: crystal analysis of racemates of the d(CGCGCG) duplex' 1993 ? 10.1021/ja00075a098 ? ? ? ? ? ? ? ? ? UK ? ? 2 'Nucleic Acids Res.' NARHAD 0389 1362-4962 ? ? 39 ? 6238 6248 'High regularity of Z-DNA revealed by ultra high-resolution crystal structure at 0.55 A.' 2011 ? 10.1093/NAR/GKR202 21459852 ? ? ? ? ? ? ? ? DK ? ? 3 'Acta Crystallogr. D Biol. Crystallogr.' ABCRE6 0766 0907-4449 ? ? 57 ? 990 995 'Anomalous signal of phosphorus used for phasing DNA oligomer: importance of data redundancy.' 2001 ? 10.1107/S0907444901006382 11418767 ? ? ? ? ? ? ? ? US ? ? 4 'Acta Crystallogr. D Biol. Crystallogr.' ABCRE6 ? 1399-0047 ? ? 69 ? 1180 1190 'Ultrahigh-resolution crystal structures of Z-DNA in complex with Mn(2+) and Zn(2+) ions.' 2013 ? 10.1107/S0907444913007798 23695262 ? ? ? ? ? ? ? ? GW ? ? 5 'J. Biol. Inorg. Chem.' JJBCFA ? 1432-1327 ? ? 20 ? 595 602 'High-resolution crystal structure of Z-DNA in complex with Cr(3+) cations.' 2015 ? 10.1007/s00775-015-1247-5 25687556 ? ? ? ? ? ? ? ? ? ? ? 6 'Acta Crystallogr D Struct Biol' ? ? 2059-7983 ? ? 72 ? 211 223 ;Atomic resolution structure of a chimeric DNA-RNA Z-type duplex in complex with Ba(2+) ions: a case of complicated multi-domain twinning. ; 2016 ? 10.1107/S2059798315024365 26894669 ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Drozdzal, P.' 1 ? primary 'Gilski, M.' 2 ? primary 'Jaskolski, M.' 3 ? 1 'Doi, M.' 4 ? 1 'Inoue, M.' 5 ? 1 'Tomoo, K.' 6 ? 1 'Ishida, T.' 7 ? 1 'Ueda, Y.' 8 ? 1 'Akagi, M.' 9 ? 1 'Urata, H.' 10 ? 2 'Brzezinski, K.' 11 ? 2 'Brzuszkiewicz, A.' 12 ? 2 'Dauter, M.' 13 ? 2 'Kubicki, M.' 14 ? 2 'Jaskolski, M.' 15 ? 2 'Dauter, Z.' 16 ? 3 'Dauter, Z.' 17 ? 3 'Adamiak, D.A.' 18 ? 4 'Drozdzal, P.' 19 ? 4 'Gilski, M.' 20 ? 4 'Kierzek, R.' 21 ? 4 'Lomozik, L.' 22 ? 4 'Jaskolski, M.' 23 ? 5 'Drozdzal, P.' 24 ? 5 'Gilski, M.' 25 ? 5 'Kierzek, R.' 26 ? 5 'Lomozik, L.' 27 ? 5 'Jaskolski, M.' 28 ? 6 'Gilski, M.' 29 ? 6 'Drozdzal, P.' 30 ? 6 'Kierzek, R.' 31 ? 6 'Jaskolski, M.' 32 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*CP*G)-3') ; 1810.205 2 ? ? ? 'racemic mixture of D- and L-oligodeoxyribonucleotides' 2 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 3 water nat water 18.015 142 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DG 6 6 6 DG DG A . n B 1 1 DC 1 7 7 DC DC B . n B 1 2 DG 2 8 8 DG DG B . n B 1 3 DC 3 9 9 DC DC B . n B 1 4 DG 4 10 10 DG DG B . n B 1 5 DC 5 11 11 DC DC B . n B 1 6 DG 6 12 12 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 1 MG MG A . D 2 MG 1 102 2 MG MG A . E 2 MG 1 101 3 MG MG B . F 3 HOH 1 201 137 HOH HOH A . F 3 HOH 2 202 40 HOH HOH A . F 3 HOH 3 203 81 HOH HOH A . F 3 HOH 4 204 46 HOH HOH A . F 3 HOH 5 205 132 HOH HOH A . F 3 HOH 6 206 122 HOH HOH A . F 3 HOH 7 207 96 HOH HOH A . F 3 HOH 8 208 23 HOH HOH A . F 3 HOH 9 209 41 HOH HOH A . F 3 HOH 10 210 8 HOH HOH A . F 3 HOH 11 211 7 HOH HOH A . F 3 HOH 12 212 89 HOH HOH A . F 3 HOH 13 213 43 HOH HOH A . F 3 HOH 14 214 21 HOH HOH A . F 3 HOH 15 215 44 HOH HOH A . F 3 HOH 16 216 92 HOH HOH A . F 3 HOH 17 217 26 HOH HOH A . F 3 HOH 18 218 70 HOH HOH A . F 3 HOH 19 219 66 HOH HOH A . F 3 HOH 20 220 91 HOH HOH A . F 3 HOH 21 221 9 HOH HOH A . F 3 HOH 22 222 123 HOH HOH A . F 3 HOH 23 223 109 HOH HOH A . F 3 HOH 24 224 14 HOH HOH A . F 3 HOH 25 225 57 HOH HOH A . F 3 HOH 26 226 55 HOH HOH A . F 3 HOH 27 227 22 HOH HOH A . F 3 HOH 28 228 78 HOH HOH A . F 3 HOH 29 229 52 HOH HOH A . F 3 HOH 30 230 74 HOH HOH A . F 3 HOH 31 231 25 HOH HOH A . F 3 HOH 32 232 3 HOH HOH A . F 3 HOH 33 233 105 HOH HOH A . F 3 HOH 34 234 10 HOH HOH A . F 3 HOH 35 235 6 HOH HOH A . F 3 HOH 36 236 36 HOH HOH A . F 3 HOH 37 237 124 HOH HOH A . F 3 HOH 38 238 30 HOH HOH A . F 3 HOH 39 239 42 HOH HOH A . F 3 HOH 40 240 136 HOH HOH A . F 3 HOH 41 241 64 HOH HOH A . F 3 HOH 42 242 86 HOH HOH A . F 3 HOH 43 243 77 HOH HOH A . F 3 HOH 44 244 68 HOH HOH A . F 3 HOH 45 245 119 HOH HOH A . F 3 HOH 46 246 85 HOH HOH A . F 3 HOH 47 247 113 HOH HOH A . F 3 HOH 48 248 103 HOH HOH A . F 3 HOH 49 249 29 HOH HOH A . F 3 HOH 50 250 83 HOH HOH A . F 3 HOH 51 251 39 HOH HOH A . F 3 HOH 52 252 104 HOH HOH A . F 3 HOH 53 253 95 HOH HOH A . F 3 HOH 54 254 98 HOH HOH A . G 3 HOH 1 201 120 HOH HOH B . G 3 HOH 2 202 141 HOH HOH B . G 3 HOH 3 203 94 HOH HOH B . G 3 HOH 4 204 133 HOH HOH B . G 3 HOH 5 205 129 HOH HOH B . G 3 HOH 6 206 134 HOH HOH B . G 3 HOH 7 207 115 HOH HOH B . G 3 HOH 8 208 69 HOH HOH B . G 3 HOH 9 209 58 HOH HOH B . G 3 HOH 10 210 56 HOH HOH B . G 3 HOH 11 211 111 HOH HOH B . G 3 HOH 12 212 20 HOH HOH B . G 3 HOH 13 213 101 HOH HOH B . G 3 HOH 14 214 75 HOH HOH B . G 3 HOH 15 215 99 HOH HOH B . G 3 HOH 16 216 114 HOH HOH B . G 3 HOH 17 217 16 HOH HOH B . G 3 HOH 18 218 31 HOH HOH B . G 3 HOH 19 219 59 HOH HOH B . G 3 HOH 20 220 90 HOH HOH B . G 3 HOH 21 221 84 HOH HOH B . G 3 HOH 22 222 50 HOH HOH B . G 3 HOH 23 223 33 HOH HOH B . G 3 HOH 24 224 61 HOH HOH B . G 3 HOH 25 225 13 HOH HOH B . G 3 HOH 26 226 73 HOH HOH B . G 3 HOH 27 227 127 HOH HOH B . G 3 HOH 28 228 24 HOH HOH B . G 3 HOH 29 229 15 HOH HOH B . G 3 HOH 30 230 48 HOH HOH B . G 3 HOH 31 231 87 HOH HOH B . G 3 HOH 32 232 102 HOH HOH B . G 3 HOH 33 233 18 HOH HOH B . G 3 HOH 34 234 2 HOH HOH B . G 3 HOH 35 235 19 HOH HOH B . G 3 HOH 36 236 45 HOH HOH B . G 3 HOH 37 237 35 HOH HOH B . G 3 HOH 38 238 12 HOH HOH B . G 3 HOH 39 239 138 HOH HOH B . G 3 HOH 40 240 5 HOH HOH B . G 3 HOH 41 241 1 HOH HOH B . G 3 HOH 42 242 32 HOH HOH B . G 3 HOH 43 243 38 HOH HOH B . G 3 HOH 44 244 131 HOH HOH B . G 3 HOH 45 245 37 HOH HOH B . G 3 HOH 46 246 47 HOH HOH B . G 3 HOH 47 247 125 HOH HOH B . G 3 HOH 48 248 130 HOH HOH B . G 3 HOH 49 249 112 HOH HOH B . G 3 HOH 50 250 117 HOH HOH B . G 3 HOH 51 251 67 HOH HOH B . G 3 HOH 52 252 93 HOH HOH B . G 3 HOH 53 253 17 HOH HOH B . G 3 HOH 54 254 11 HOH HOH B . G 3 HOH 55 255 76 HOH HOH B . G 3 HOH 56 256 51 HOH HOH B . G 3 HOH 57 257 108 HOH HOH B . G 3 HOH 58 258 116 HOH HOH B . G 3 HOH 59 259 65 HOH HOH B . G 3 HOH 60 260 49 HOH HOH B . G 3 HOH 61 261 100 HOH HOH B . G 3 HOH 62 262 27 HOH HOH B . G 3 HOH 63 263 54 HOH HOH B . G 3 HOH 64 264 110 HOH HOH B . G 3 HOH 65 265 126 HOH HOH B . G 3 HOH 66 266 79 HOH HOH B . G 3 HOH 67 267 107 HOH HOH B . G 3 HOH 68 268 62 HOH HOH B . G 3 HOH 69 269 28 HOH HOH B . G 3 HOH 70 270 97 HOH HOH B . G 3 HOH 71 271 34 HOH HOH B . G 3 HOH 72 272 60 HOH HOH B . G 3 HOH 73 273 80 HOH HOH B . G 3 HOH 74 274 71 HOH HOH B . G 3 HOH 75 275 88 HOH HOH B . G 3 HOH 76 276 106 HOH HOH B . G 3 HOH 77 277 135 HOH HOH B . G 3 HOH 78 278 72 HOH HOH B . G 3 HOH 79 279 142 HOH HOH B . G 3 HOH 80 280 82 HOH HOH B . G 3 HOH 81 281 139 HOH HOH B . G 3 HOH 82 282 63 HOH HOH B . G 3 HOH 83 283 118 HOH HOH B . G 3 HOH 84 284 4 HOH HOH B . G 3 HOH 85 285 140 HOH HOH B . G 3 HOH 86 286 121 HOH HOH B . G 3 HOH 87 287 53 HOH HOH B . G 3 HOH 88 288 128 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XPREP ? ? ? . 2 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELXS ? ? ? . 3 ? refinement ? ? ? ? ? ? ? ? ? ? ? SHELXL ? ? ? 2014/7 4 ? refinement ? ? ? ? ? ? ? ? ? ? ? SHELXL-97 ? ? ? . 5 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 6 ? phasing ? ? ? ? ? ? ? ? ? ? ? SHELX ? ? ? . 7 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 106.73 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5JZQ _cell.details ? _cell.formula_units_Z ? _cell.length_a 81.300 _cell.length_a_esd ? _cell.length_b 17.610 _cell.length_b_esd ? _cell.length_c 36.490 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 16 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5JZQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 15 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2/c 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5JZQ _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.74 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 28.79 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;1.5 MM WATER SOLUTION OF DNA MIXED 1:1 WITH 0.2 M (NH4)2OAc, 0.15 M Mg(OAc)2, 0.05 M HEPES SODIUM PH 7.0 AND 5% (W/V) PEG 4000 AND EQUILIBRATED AGAINST 0.5 ML of 5% (V/V) PEG 4000. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX-225' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-03-29 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Double crystal Si (111) Channel' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.7999 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'BESSY BEAMLINE 14.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.7999 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 14.2 _diffrn_source.pdbx_synchrotron_site BESSY # _reflns.B_iso_Wilson_estimate 12.87 _reflns.entry_id 5JZQ _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 0.78 _reflns.d_resolution_low 38.93 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 53660 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 95.5 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.01 _reflns.pdbx_Rmerge_I_obs 0.0339 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 25.75 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.999 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 0.78 _reflns_shell.d_res_low 0.80 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.12 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 88.4 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.4030 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 4.54 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ;ANISOTROPIC ATOMIC DISPLACEMENT PARAMETERS WERE USED. HYDROGEN ATOMS WERE ADDED AT RIDING POSITION. THE FINAL REFINEMENT WAS CALCULATED USING WEIGHTED FULL-MATRIX LEAST-SQUARES PROCEDURE AND ALL REFLECTIONS. ; _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5JZQ _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 0.78 _refine.ls_d_res_low 38.93 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 53660 _refine.ls_number_reflns_R_free 982 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 95.5 _refine.ls_percent_reflns_R_free 1.830 _refine.ls_R_factor_all 0.1383 _refine.ls_R_factor_obs 0.1399 _refine.ls_R_factor_R_free 0.1425 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1386 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.(1975) 91, 201' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values 'CLOWNEY, GELBIN & PARKINSON' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case 'PHOSPHATE AND GLYCOSIDIC ANGLES ACCORDING TO PDB MODEL 3P4J' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 5JZQ _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues 45 _refine_analyze.occupancy_sum_hydrogen 133.0 _refine_analyze.occupancy_sum_non_hydrogen 339.1 _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 3 _refine_hist.number_atoms_solvent 142 _refine_hist.number_atoms_total 385 _refine_hist.d_res_high 0.78 _refine_hist.d_res_low 38.93 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0169 ? ? ? s_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.776 ? ? ? s_angle_d ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? s_similar_dist ? ? 'X-RAY DIFFRACTION' ? 0.008 ? ? ? s_from_restr_planes ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? s_zero_chiral_vol ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? s_non_zero_chiral_vol ? ? 'X-RAY DIFFRACTION' ? 0.1275 ? ? ? s_anti_bump_dis_restr ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? s_rigid_bond_adp_cmpnt ? ? 'X-RAY DIFFRACTION' ? 0.0652 ? ? ? s_similar_adp_cmpnt ? ? 'X-RAY DIFFRACTION' ? 0.1149 ? ? ? s_approx_iso_adps ? ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 5JZQ _pdbx_refine.R_factor_all_no_cutoff 0.1383 _pdbx_refine.R_factor_obs_no_cutoff 0.1386 _pdbx_refine.free_R_factor_no_cutoff 0.1425 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 1.830 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 982 _pdbx_refine.R_factor_all_4sig_cutoff 0.1225 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1207 _pdbx_refine.free_R_factor_4sig_cutoff 0.1264 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 1.427 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 766 _pdbx_refine.number_reflns_obs_4sig_cutoff 40459 # _database_PDB_matrix.entry_id 5JZQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 5JZQ _struct.title 'Ultrahigh-resolution centrosymmetric crystal structure of Z-DNA reveals massive presence of multiple conformations' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5JZQ _struct_keywords.text ;Z-DNA duplex, self-complementary duplex, centrosymmetric space group, DNA enantiomer; racemate, L-ribose nucleic acid; disorder; macromolecular phase problem, ab initio methods, dual-space methods, DNA ; _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5JZQ _struct_ref.pdbx_db_accession 5JZQ _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 5JZQ A 1 ? 6 ? 5JZQ 1 ? 6 ? 1 6 2 1 5JZQ B 1 ? 6 ? 5JZQ 7 ? 12 ? 7 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 840 ? 1 MORE -18 ? 1 'SSA (A^2)' 2440 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 OP2 A ? ? 1_555 C MG . MG A ? A DG 2 A MG 101 4_575 ? ? ? ? ? ? ? 2.679 ? ? metalc2 metalc ? ? A DG 2 OP2 B ? ? 1_555 C MG . MG B ? A DG 2 A MG 101 4_575 ? ? ? ? ? ? ? 1.904 ? ? metalc3 metalc ? ? A DG 2 "O5'" A ? ? 1_555 C MG . MG A ? A DG 2 A MG 101 4_575 ? ? ? ? ? ? ? 2.792 ? ? metalc4 metalc ? ? A DG 2 OP1 A ? ? 1_555 E MG . MG ? ? A DG 2 B MG 101 4_585 ? ? ? ? ? ? ? 1.942 ? ? metalc5 metalc ? ? A DG 2 OP1 B ? ? 1_555 E MG . MG ? ? A DG 2 B MG 101 4_585 ? ? ? ? ? ? ? 2.056 ? ? metalc6 metalc ? ? A DG 6 OP2 ? ? ? 1_555 C MG . MG A ? A DG 6 A MG 101 1_555 ? ? ? ? ? ? ? 1.954 ? ? metalc7 metalc ? ? A DG 6 OP2 ? ? ? 1_555 C MG . MG B ? A DG 6 A MG 101 1_555 ? ? ? ? ? ? ? 2.099 ? ? metalc8 metalc ? ? C MG . MG A ? ? 1_555 F HOH . O A ? A MG 101 A HOH 218 1_555 ? ? ? ? ? ? ? 2.004 ? ? metalc9 metalc ? ? C MG . MG B ? ? 1_555 F HOH . O B ? A MG 101 A HOH 218 1_555 ? ? ? ? ? ? ? 2.102 ? ? metalc10 metalc ? ? C MG . MG A ? ? 1_555 F HOH . O A ? A MG 101 A HOH 234 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc11 metalc ? ? C MG . MG B ? ? 1_555 F HOH . O B ? A MG 101 A HOH 234 1_555 ? ? ? ? ? ? ? 1.712 ? ? metalc12 metalc ? ? C MG . MG A ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 235 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc13 metalc ? ? C MG . MG B ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 235 1_555 ? ? ? ? ? ? ? 2.234 ? ? metalc14 metalc ? ? C MG . MG A ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 237 1_555 ? ? ? ? ? ? ? 2.959 ? ? metalc15 metalc ? ? C MG . MG B ? ? 1_555 F HOH . O ? ? A MG 101 A HOH 237 1_555 ? ? ? ? ? ? ? 2.853 ? ? metalc16 metalc ? ? C MG . MG A ? ? 1_555 G HOH . O A ? A MG 101 B HOH 229 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc17 metalc ? ? C MG . MG B ? ? 1_555 G HOH . O B ? A MG 101 B HOH 229 1_555 ? ? ? ? ? ? ? 2.008 ? ? metalc18 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O B ? A MG 102 A HOH 209 1_555 ? ? ? ? ? ? ? 1.961 ? ? metalc19 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O A ? A MG 102 A HOH 209 1_555 ? ? ? ? ? ? ? 2.792 ? ? metalc20 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O A ? A MG 102 A HOH 209 2_555 ? ? ? ? ? ? ? 2.791 ? ? metalc21 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O B ? A MG 102 A HOH 209 2_555 ? ? ? ? ? ? ? 1.961 ? ? metalc22 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O A ? A MG 102 A HOH 239 1_555 ? ? ? ? ? ? ? 2.526 ? ? metalc23 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O B ? A MG 102 A HOH 239 1_555 ? ? ? ? ? ? ? 2.145 ? ? metalc24 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O A ? A MG 102 A HOH 239 2_555 ? ? ? ? ? ? ? 2.527 ? ? metalc25 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O B ? A MG 102 A HOH 239 2_555 ? ? ? ? ? ? ? 2.145 ? ? metalc26 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O A ? A MG 102 A HOH 254 1_555 ? ? ? ? ? ? ? 1.979 ? ? metalc27 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O B ? A MG 102 A HOH 254 1_555 ? ? ? ? ? ? ? 2.774 ? ? metalc28 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O A ? A MG 102 A HOH 254 2_555 ? ? ? ? ? ? ? 1.978 ? ? metalc29 metalc ? ? D MG . MG ? ? ? 1_555 F HOH . O B ? A MG 102 A HOH 254 2_555 ? ? ? ? ? ? ? 2.774 ? ? metalc30 metalc ? ? B DC 3 OP1 A ? ? 1_555 E MG . MG ? ? B DC 9 B MG 101 1_555 ? ? ? ? ? ? ? 2.382 ? ? metalc31 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 101 B HOH 201 1_555 ? ? ? ? ? ? ? 2.625 ? ? metalc32 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O A ? B MG 101 B HOH 235 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc33 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 101 B HOH 239 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc34 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 101 B HOH 254 1_555 ? ? ? ? ? ? ? 2.055 ? ? metalc35 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 101 B HOH 259 1_555 ? ? ? ? ? ? ? 2.703 ? ? metalc36 metalc ? ? E MG . MG ? ? ? 1_555 G HOH . O ? ? B MG 101 B HOH 271 1_565 ? ? ? ? ? ? ? 2.097 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 A ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 B ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 A ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 A ? ? 1_555 B DC 5 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 A ? ? 1_555 B DC 5 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 A ? ? 1_555 B DC 5 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 A ? ? 1_555 B DG 4 N1 A ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 A ? ? 1_555 B DG 4 O6 A ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 A ? ? 1_555 B DG 4 N2 A ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 5 B DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 A A DG 2 ? A DG 2 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 "O5'" A A DG 2 ? A DG 2 ? 1_555 55.0 ? 2 OP2 A A DG 2 ? A DG 2 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 OP2 ? A DG 6 ? A DG 6 ? 1_555 89.0 ? 3 "O5'" A A DG 2 ? A DG 2 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 OP2 ? A DG 6 ? A DG 6 ? 1_555 86.6 ? 4 OP2 A A DG 2 ? A DG 2 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A F HOH . ? A HOH 218 ? 1_555 85.2 ? 5 "O5'" A A DG 2 ? A DG 2 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A F HOH . ? A HOH 218 ? 1_555 79.8 ? 6 OP2 ? A DG 6 ? A DG 6 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A F HOH . ? A HOH 218 ? 1_555 6.8 ? 7 OP2 A A DG 2 ? A DG 2 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A F HOH . ? A HOH 234 ? 1_555 80.9 ? 8 "O5'" A A DG 2 ? A DG 2 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A F HOH . ? A HOH 234 ? 1_555 83.1 ? 9 OP2 ? A DG 6 ? A DG 6 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A F HOH . ? A HOH 234 ? 1_555 8.2 ? 10 O A F HOH . ? A HOH 218 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A F HOH . ? A HOH 234 ? 1_555 8.2 ? 11 OP2 A A DG 2 ? A DG 2 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 235 ? 1_555 84.5 ? 12 "O5'" A A DG 2 ? A DG 2 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 235 ? 1_555 77.8 ? 13 OP2 ? A DG 6 ? A DG 6 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 235 ? 1_555 8.8 ? 14 O A F HOH . ? A HOH 218 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 235 ? 1_555 2.1 ? 15 O A F HOH . ? A HOH 234 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 235 ? 1_555 9.6 ? 16 OP2 A A DG 2 ? A DG 2 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 237 ? 1_555 88.6 ? 17 "O5'" A A DG 2 ? A DG 2 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 237 ? 1_555 80.0 ? 18 OP2 ? A DG 6 ? A DG 6 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 237 ? 1_555 7.8 ? 19 O A F HOH . ? A HOH 218 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 237 ? 1_555 4.1 ? 20 O A F HOH . ? A HOH 234 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 237 ? 1_555 12.0 ? 21 O ? F HOH . ? A HOH 235 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 237 ? 1_555 4.2 ? 22 OP2 A A DG 2 ? A DG 2 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A G HOH . ? B HOH 229 ? 1_555 77.4 ? 23 "O5'" A A DG 2 ? A DG 2 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A G HOH . ? B HOH 229 ? 1_555 76.5 ? 24 OP2 ? A DG 6 ? A DG 6 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A G HOH . ? B HOH 229 ? 1_555 12.3 ? 25 O A F HOH . ? A HOH 218 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A G HOH . ? B HOH 229 ? 1_555 7.8 ? 26 O A F HOH . ? A HOH 234 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A G HOH . ? B HOH 229 ? 1_555 6.6 ? 27 O ? F HOH . ? A HOH 235 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A G HOH . ? B HOH 229 ? 1_555 7.7 ? 28 O ? F HOH . ? A HOH 237 ? 1_555 MG A C MG . ? A MG 101 ? 4_575 O A G HOH . ? B HOH 229 ? 1_555 11.7 ? 29 OP2 B A DG 2 ? A DG 2 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 OP2 ? A DG 6 ? A DG 6 ? 1_555 87.4 ? 30 OP2 B A DG 2 ? A DG 2 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O B F HOH . ? A HOH 218 ? 1_555 81.9 ? 31 OP2 ? A DG 6 ? A DG 6 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O B F HOH . ? A HOH 218 ? 1_555 6.4 ? 32 OP2 B A DG 2 ? A DG 2 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O B F HOH . ? A HOH 234 ? 1_555 79.5 ? 33 OP2 ? A DG 6 ? A DG 6 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O B F HOH . ? A HOH 234 ? 1_555 8.7 ? 34 O B F HOH . ? A HOH 218 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O B F HOH . ? A HOH 234 ? 1_555 7.5 ? 35 OP2 B A DG 2 ? A DG 2 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 235 ? 1_555 79.8 ? 36 OP2 ? A DG 6 ? A DG 6 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 235 ? 1_555 8.9 ? 37 O B F HOH . ? A HOH 218 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 235 ? 1_555 2.6 ? 38 O B F HOH . ? A HOH 234 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 235 ? 1_555 8.4 ? 39 OP2 B A DG 2 ? A DG 2 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 237 ? 1_555 83.5 ? 40 OP2 ? A DG 6 ? A DG 6 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 237 ? 1_555 8.0 ? 41 O B F HOH . ? A HOH 218 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 237 ? 1_555 3.9 ? 42 O B F HOH . ? A HOH 234 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 237 ? 1_555 11.3 ? 43 O ? F HOH . ? A HOH 235 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O ? F HOH . ? A HOH 237 ? 1_555 4.2 ? 44 OP2 B A DG 2 ? A DG 2 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O B G HOH . ? B HOH 229 ? 1_555 75.4 ? 45 OP2 ? A DG 6 ? A DG 6 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O B G HOH . ? B HOH 229 ? 1_555 12.0 ? 46 O B F HOH . ? A HOH 218 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O B G HOH . ? B HOH 229 ? 1_555 7.4 ? 47 O B F HOH . ? A HOH 234 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O B G HOH . ? B HOH 229 ? 1_555 5.3 ? 48 O ? F HOH . ? A HOH 235 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O B G HOH . ? B HOH 229 ? 1_555 6.6 ? 49 O ? F HOH . ? A HOH 237 ? 1_555 MG B C MG . ? A MG 101 ? 4_575 O B G HOH . ? B HOH 229 ? 1_555 10.7 ? 50 OP1 A A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 OP1 B A DG 2 ? A DG 2 ? 1_555 14.5 ? 51 OP1 A A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 OP1 A B DC 3 ? B DC 9 ? 1_555 26.9 ? 52 OP1 B A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 OP1 A B DC 3 ? B DC 9 ? 1_555 37.7 ? 53 OP1 A A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 201 ? 1_555 33.9 ? 54 OP1 B A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 201 ? 1_555 45.0 ? 55 OP1 A B DC 3 ? B DC 9 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 201 ? 1_555 7.4 ? 56 OP1 A A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O A G HOH . ? B HOH 235 ? 1_555 34.4 ? 57 OP1 B A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O A G HOH . ? B HOH 235 ? 1_555 45.3 ? 58 OP1 A B DC 3 ? B DC 9 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O A G HOH . ? B HOH 235 ? 1_555 7.7 ? 59 O ? G HOH . ? B HOH 201 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O A G HOH . ? B HOH 235 ? 1_555 0.8 ? 60 OP1 A A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 239 ? 1_555 35.7 ? 61 OP1 B A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 239 ? 1_555 45.7 ? 62 OP1 A B DC 3 ? B DC 9 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 239 ? 1_555 8.9 ? 63 O ? G HOH . ? B HOH 201 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 239 ? 1_555 4.2 ? 64 O A G HOH . ? B HOH 235 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 239 ? 1_555 3.4 ? 65 OP1 A A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 254 ? 1_555 33.9 ? 66 OP1 B A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 254 ? 1_555 41.3 ? 67 OP1 A B DC 3 ? B DC 9 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 254 ? 1_555 11.2 ? 68 O ? G HOH . ? B HOH 201 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 254 ? 1_555 12.0 ? 69 O A G HOH . ? B HOH 235 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 254 ? 1_555 11.4 ? 70 O ? G HOH . ? B HOH 239 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 254 ? 1_555 8.7 ? 71 OP1 A A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 259 ? 1_555 36.4 ? 72 OP1 B A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 259 ? 1_555 44.9 ? 73 OP1 A B DC 3 ? B DC 9 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 259 ? 1_555 11.1 ? 74 O ? G HOH . ? B HOH 201 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 259 ? 1_555 9.0 ? 75 O A G HOH . ? B HOH 235 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 259 ? 1_555 8.3 ? 76 O ? G HOH . ? B HOH 239 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 259 ? 1_555 5.0 ? 77 O ? G HOH . ? B HOH 254 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 259 ? 1_555 4.5 ? 78 OP1 A A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 271 ? 1_565 38.9 ? 79 OP1 B A DG 2 ? A DG 2 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 271 ? 1_565 47.6 ? 80 OP1 A B DC 3 ? B DC 9 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 271 ? 1_565 12.9 ? 81 O ? G HOH . ? B HOH 201 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 271 ? 1_565 9.2 ? 82 O A G HOH . ? B HOH 235 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 271 ? 1_565 8.4 ? 83 O ? G HOH . ? B HOH 239 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 271 ? 1_565 5.1 ? 84 O ? G HOH . ? B HOH 254 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 271 ? 1_565 7.0 ? 85 O ? G HOH . ? B HOH 259 ? 1_555 MG ? E MG . ? B MG 101 ? 4_585 O ? G HOH . ? B HOH 271 ? 1_565 2.7 ? 86 O B F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 209 ? 1_555 18.5 ? 87 O B F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 209 ? 2_555 88.9 ? 88 O A F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 209 ? 2_555 107.4 ? 89 O B F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 209 ? 2_555 70.3 ? 90 O A F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 209 ? 2_555 88.8 ? 91 O A F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 209 ? 2_555 18.5 ? 92 O B F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 239 ? 1_555 76.7 ? 93 O A F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 239 ? 1_555 77.9 ? 94 O A F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 239 ? 1_555 89.3 ? 95 O B F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 239 ? 1_555 85.6 ? 96 O B F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 239 ? 1_555 106.6 ? 97 O A F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 239 ? 1_555 111.0 ? 98 O A F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 239 ? 1_555 75.5 ? 99 O B F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 239 ? 1_555 82.1 ? 100 O A F HOH . ? A HOH 239 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 239 ? 1_555 33.4 ? 101 O B F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 239 ? 2_555 85.6 ? 102 O A F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 239 ? 2_555 89.3 ? 103 O A F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 239 ? 2_555 77.9 ? 104 O B F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 239 ? 2_555 76.7 ? 105 O A F HOH . ? A HOH 239 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 239 ? 2_555 158.4 ? 106 O B F HOH . ? A HOH 239 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 239 ? 2_555 150.4 ? 107 O B F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 239 ? 2_555 82.1 ? 108 O A F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 239 ? 2_555 75.5 ? 109 O A F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 239 ? 2_555 111.0 ? 110 O B F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 239 ? 2_555 106.6 ? 111 O A F HOH . ? A HOH 239 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 239 ? 2_555 150.3 ? 112 O B F HOH . ? A HOH 239 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 239 ? 2_555 169.5 ? 113 O A F HOH . ? A HOH 239 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 239 ? 2_555 33.4 ? 114 O B F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 1_555 109.1 ? 115 O A F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 1_555 90.6 ? 116 O A F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 1_555 162.0 ? 117 O B F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 1_555 179.2 ? 118 O A F HOH . ? A HOH 239 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 1_555 93.7 ? 119 O B F HOH . ? A HOH 239 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 1_555 97.6 ? 120 O A F HOH . ? A HOH 239 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 1_555 103.8 ? 121 O B F HOH . ? A HOH 239 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 1_555 73.7 ? 122 O B F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 1_555 89.9 ? 123 O A F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 1_555 72.6 ? 124 O A F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 1_555 160.3 ? 125 O B F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 1_555 152.7 ? 126 O A F HOH . ? A HOH 239 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 1_555 71.2 ? 127 O B F HOH . ? A HOH 239 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 1_555 86.0 ? 128 O A F HOH . ? A HOH 239 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 1_555 121.6 ? 129 O B F HOH . ? A HOH 239 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 1_555 88.3 ? 130 O A F HOH . ? A HOH 254 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 1_555 26.6 ? 131 O B F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 2_555 179.2 ? 132 O A F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 2_555 162.0 ? 133 O A F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 2_555 90.6 ? 134 O B F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 2_555 109.2 ? 135 O A F HOH . ? A HOH 239 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 2_555 103.8 ? 136 O B F HOH . ? A HOH 239 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 2_555 73.8 ? 137 O A F HOH . ? A HOH 239 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 2_555 93.7 ? 138 O B F HOH . ? A HOH 239 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 2_555 97.5 ? 139 O A F HOH . ? A HOH 254 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 2_555 71.4 ? 140 O B F HOH . ? A HOH 254 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O A F HOH . ? A HOH 254 ? 2_555 90.8 ? 141 O B F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 2_555 152.7 ? 142 O A F HOH . ? A HOH 209 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 2_555 160.3 ? 143 O A F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 2_555 72.6 ? 144 O B F HOH . ? A HOH 209 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 2_555 89.9 ? 145 O A F HOH . ? A HOH 239 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 2_555 121.7 ? 146 O B F HOH . ? A HOH 239 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 2_555 88.3 ? 147 O A F HOH . ? A HOH 239 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 2_555 71.2 ? 148 O B F HOH . ? A HOH 239 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 2_555 86.0 ? 149 O A F HOH . ? A HOH 254 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 2_555 90.8 ? 150 O B F HOH . ? A HOH 254 ? 1_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 2_555 114.3 ? 151 O A F HOH . ? A HOH 254 ? 2_555 MG ? D MG . ? A MG 102 ? 1_555 O B F HOH . ? A HOH 254 ? 2_555 26.6 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C3'" A DG 2 ? A "C2'" A DG 2 ? A 1.463 1.516 -0.053 0.008 N 2 1 "C5'" B DC 9 ? B "C4'" B DC 9 ? B 1.554 1.512 0.042 0.007 N # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 102 ? D MG . 2 1 A HOH 241 ? F HOH . 3 1 A HOH 244 ? F HOH . # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? B HOH 282 ? 5.85 . 2 1 O A B HOH 283 ? 6.07 . 3 1 O ? B HOH 284 ? 6.13 . 4 1 O ? B HOH 285 ? 6.27 . 5 1 O ? B HOH 286 ? 6.37 . 6 1 O A B HOH 287 ? 6.78 . 7 1 O ? B HOH 288 ? 7.43 . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DC OP3 O N N 1 DC P P N N 2 DC OP1 O N N 3 DC OP2 O N N 4 DC "O5'" O N N 5 DC "C5'" C N N 6 DC "C4'" C N R 7 DC "O4'" O N N 8 DC "C3'" C N S 9 DC "O3'" O N N 10 DC "C2'" C N N 11 DC "C1'" C N R 12 DC N1 N N N 13 DC C2 C N N 14 DC O2 O N N 15 DC N3 N N N 16 DC C4 C N N 17 DC N4 N N N 18 DC C5 C N N 19 DC C6 C N N 20 DC HOP3 H N N 21 DC HOP2 H N N 22 DC "H5'" H N N 23 DC "H5''" H N N 24 DC "H4'" H N N 25 DC "H3'" H N N 26 DC "HO3'" H N N 27 DC "H2'" H N N 28 DC "H2''" H N N 29 DC "H1'" H N N 30 DC H41 H N N 31 DC H42 H N N 32 DC H5 H N N 33 DC H6 H N N 34 DG OP3 O N N 35 DG P P N N 36 DG OP1 O N N 37 DG OP2 O N N 38 DG "O5'" O N N 39 DG "C5'" C N N 40 DG "C4'" C N R 41 DG "O4'" O N N 42 DG "C3'" C N S 43 DG "O3'" O N N 44 DG "C2'" C N N 45 DG "C1'" C N R 46 DG N9 N Y N 47 DG C8 C Y N 48 DG N7 N Y N 49 DG C5 C Y N 50 DG C6 C N N 51 DG O6 O N N 52 DG N1 N N N 53 DG C2 C N N 54 DG N2 N N N 55 DG N3 N N N 56 DG C4 C Y N 57 DG HOP3 H N N 58 DG HOP2 H N N 59 DG "H5'" H N N 60 DG "H5''" H N N 61 DG "H4'" H N N 62 DG "H3'" H N N 63 DG "HO3'" H N N 64 DG "H2'" H N N 65 DG "H2''" H N N 66 DG "H1'" H N N 67 DG H8 H N N 68 DG H1 H N N 69 DG H21 H N N 70 DG H22 H N N 71 HOH O O N N 72 HOH H1 H N N 73 HOH H2 H N N 74 MG MG MG N N 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DC OP3 P sing N N 1 DC OP3 HOP3 sing N N 2 DC P OP1 doub N N 3 DC P OP2 sing N N 4 DC P "O5'" sing N N 5 DC OP2 HOP2 sing N N 6 DC "O5'" "C5'" sing N N 7 DC "C5'" "C4'" sing N N 8 DC "C5'" "H5'" sing N N 9 DC "C5'" "H5''" sing N N 10 DC "C4'" "O4'" sing N N 11 DC "C4'" "C3'" sing N N 12 DC "C4'" "H4'" sing N N 13 DC "O4'" "C1'" sing N N 14 DC "C3'" "O3'" sing N N 15 DC "C3'" "C2'" sing N N 16 DC "C3'" "H3'" sing N N 17 DC "O3'" "HO3'" sing N N 18 DC "C2'" "C1'" sing N N 19 DC "C2'" "H2'" sing N N 20 DC "C2'" "H2''" sing N N 21 DC "C1'" N1 sing N N 22 DC "C1'" "H1'" sing N N 23 DC N1 C2 sing N N 24 DC N1 C6 sing N N 25 DC C2 O2 doub N N 26 DC C2 N3 sing N N 27 DC N3 C4 doub N N 28 DC C4 N4 sing N N 29 DC C4 C5 sing N N 30 DC N4 H41 sing N N 31 DC N4 H42 sing N N 32 DC C5 C6 doub N N 33 DC C5 H5 sing N N 34 DC C6 H6 sing N N 35 DG OP3 P sing N N 36 DG OP3 HOP3 sing N N 37 DG P OP1 doub N N 38 DG P OP2 sing N N 39 DG P "O5'" sing N N 40 DG OP2 HOP2 sing N N 41 DG "O5'" "C5'" sing N N 42 DG "C5'" "C4'" sing N N 43 DG "C5'" "H5'" sing N N 44 DG "C5'" "H5''" sing N N 45 DG "C4'" "O4'" sing N N 46 DG "C4'" "C3'" sing N N 47 DG "C4'" "H4'" sing N N 48 DG "O4'" "C1'" sing N N 49 DG "C3'" "O3'" sing N N 50 DG "C3'" "C2'" sing N N 51 DG "C3'" "H3'" sing N N 52 DG "O3'" "HO3'" sing N N 53 DG "C2'" "C1'" sing N N 54 DG "C2'" "H2'" sing N N 55 DG "C2'" "H2''" sing N N 56 DG "C1'" N9 sing N N 57 DG "C1'" "H1'" sing N N 58 DG N9 C8 sing Y N 59 DG N9 C4 sing Y N 60 DG C8 N7 doub Y N 61 DG C8 H8 sing N N 62 DG N7 C5 sing Y N 63 DG C5 C6 sing N N 64 DG C5 C4 doub Y N 65 DG C6 O6 doub N N 66 DG C6 N1 sing N N 67 DG N1 C2 sing N N 68 DG N1 H1 sing N N 69 DG C2 N2 sing N N 70 DG C2 N3 doub N N 71 DG N2 H21 sing N N 72 DG N2 H22 sing N N 73 DG N3 C4 sing N N 74 HOH O H1 sing N N 75 HOH O H2 sing N N 76 # _ndb_struct_conf_na.entry_id 5JZQ _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.354 -0.074 -0.012 11.071 -1.152 0.399 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 5 1_555 0.494 -0.194 0.348 -11.428 2.239 -2.997 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 -0.043 -0.099 0.028 -0.151 -1.163 2.833 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.247 -0.117 0.047 -1.619 -0.722 0.845 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 -0.285 -0.126 0.074 6.292 -6.106 1.081 5 A_DC5:DG8_B A 5 ? B 8 ? 19 1 1 A DG 6 1_555 B DC 1 1_555 0.221 -0.100 0.151 -6.628 -4.041 -0.764 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DG 2 1_555 B DC 5 1_555 -0.226 5.534 4.190 -1.084 1.394 -9.629 -35.582 -3.773 3.311 -8.214 -6.390 -9.789 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 0.170 -1.566 3.085 3.107 -8.868 -45.310 2.675 0.454 2.732 11.367 3.982 -46.223 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.171 5.370 3.578 -0.668 -2.030 -12.747 -21.082 -1.674 4.361 9.061 -2.981 -12.924 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 -0.089 -1.412 3.214 -0.525 -5.163 -47.698 2.129 -0.149 3.053 6.362 -0.647 -47.963 4 AA_DG4DC5:DG8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DC 5 1_555 B DG 2 1_555 A DG 6 1_555 B DC 1 1_555 0.017 5.605 3.829 0.850 -3.082 -6.853 -26.990 4.408 5.751 24.129 6.654 -7.561 5 AA_DC5DG6:DC7DG8_BB A 5 ? B 8 ? A 6 ? B 7 ? # _pdbx_audit_support.funding_organization 'National Science Centre' _pdbx_audit_support.country Poland _pdbx_audit_support.grant_number 2013/10/M/NZ1/00251 _pdbx_audit_support.ordinal 1 # _pdbx_related_exp_data_set.ordinal 1 _pdbx_related_exp_data_set.data_reference 10.18150/repod.0349376 _pdbx_related_exp_data_set.metadata_reference 10.18150/repod.0349376 _pdbx_related_exp_data_set.data_set_type 'diffraction image data' _pdbx_related_exp_data_set.details ? # _atom_sites.entry_id 5JZQ _atom_sites.fract_transf_matrix[1][1] 0.012300 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.003697 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.056786 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028616 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_