HEADER VIRAL PROTEIN 17-MAY-16 5JZR TITLE SOLID-STATE MAS NMR STRUCTURE OF ACINETOBACTER PHAGE 205 (AP205) COAT TITLE 2 PROTEIN IN ASSEMBLED CAPSID PARTICLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACINETOBACTER PHAGE AP205; SOURCE 3 ORGANISM_TAXID: 154784; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COAT PROTEIN, VIRAL PROTEIN EXPDTA SOLID-STATE NMR NUMMDL 20 AUTHOR K.JAUDZEMS,L.B.ANDREAS,J.STANEK,D.LALLI,A.BERTARELLO,T.LE MARCHAND, AUTHOR 2 D.CALA-DE PAEPE,S.KOTELOVICA,I.AKOPJANA,B.KNOTT,S.WEGNER,F.ENGELKE, AUTHOR 3 A.LESAGE,L.EMSLEY,K.TARS,T.HERRMANN,G.PINTACUDA REVDAT 6 14-JUN-23 5JZR 1 REMARK REVDAT 5 21-AUG-19 5JZR 1 REMARK REVDAT 4 07-FEB-18 5JZR 1 REMARK REVDAT 3 31-AUG-16 5JZR 1 JRNL REVDAT 2 17-AUG-16 5JZR 1 JRNL REVDAT 1 10-AUG-16 5JZR 0 JRNL AUTH L.B.ANDREAS,K.JAUDZEMS,J.STANEK,D.LALLI,A.BERTARELLO, JRNL AUTH 2 T.LE MARCHAND,D.CALA-DE PAEPE,S.KOTELOVICA,I.AKOPJANA, JRNL AUTH 3 B.KNOTT,S.WEGNER,F.ENGELKE,A.LESAGE,L.EMSLEY,K.TARS, JRNL AUTH 4 T.HERRMANN,G.PINTACUDA JRNL TITL STRUCTURE OF FULLY PROTONATED PROTEINS BY PROTON-DETECTED JRNL TITL 2 MAGIC-ANGLE SPINNING NMR. JRNL REF PROC.NATL.ACAD.SCI.USA V. 113 9187 2016 JRNL REFN ESSN 1091-6490 JRNL PMID 27489348 JRNL DOI 10.1073/PNAS.1602248113 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY REMARK 3 AUTHORS : GODDARD REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JZR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220832. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.055 REMARK 210 PRESSURE : AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 500 MG/ML [U-100% 13C; U-100% REMARK 210 15N] AP205 COAT PROTEIN, 15 % [U- REMARK 210 2H] PEG, 5 MM HEPES, 50 MM REMARK 210 SODIUM CHLORIDE, H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HHNH; 3D HHCH; 3D HCCH-TOCSY; REMARK 210 3D HNCAH; 3D HNCOCAH; 3D HCOCAH; REMARK 210 3D HCONCAH; 3D HCANH; 3D REMARK 210 HCOCACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 1000 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CARA 1.9, TOPSPIN 3.5, SPARKY, REMARK 210 UNIO 2.6, CYANA 3.97 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 4 67.29 -118.76 REMARK 500 1 THR A 10 94.39 74.84 REMARK 500 1 THR A 12 84.09 -162.09 REMARK 500 1 ALA A 13 -166.89 -179.26 REMARK 500 1 THR A 22 12.04 -145.22 REMARK 500 1 PHE A 28 172.20 177.12 REMARK 500 1 ARG A 36 70.12 55.61 REMARK 500 1 VAL A 37 30.15 -95.64 REMARK 500 1 VAL A 39 86.26 47.68 REMARK 500 1 LYS A 61 156.52 -47.69 REMARK 500 1 PRO A 62 -169.74 -69.81 REMARK 500 1 ALA A 66 74.12 -107.59 REMARK 500 1 ASP A 67 -70.44 -137.05 REMARK 500 1 SER A 86 -175.40 -58.03 REMARK 500 1 THR A 121 38.96 -94.09 REMARK 500 1 SER A 127 -74.80 -49.96 REMARK 500 1 ASP A 128 -169.59 -170.47 REMARK 500 1 THR A 129 -42.69 -137.48 REMARK 500 1 THR A 130 -178.68 -172.65 REMARK 500 1 ALA B 202 -66.99 -109.81 REMARK 500 1 LYS B 204 68.57 -116.75 REMARK 500 1 THR B 210 94.08 174.82 REMARK 500 1 THR B 212 75.69 -161.39 REMARK 500 1 ALA B 213 -167.67 -167.92 REMARK 500 1 ARG B 236 73.82 52.46 REMARK 500 1 LYS B 238 -166.01 49.14 REMARK 500 1 VAL B 239 105.74 -44.41 REMARK 500 1 PRO B 260 -174.82 -69.75 REMARK 500 1 LYS B 261 159.72 61.41 REMARK 500 1 PRO B 262 -168.47 -69.76 REMARK 500 1 ALA B 266 72.43 -110.52 REMARK 500 1 ASP B 267 -76.53 -138.88 REMARK 500 1 SER B 286 -173.47 -58.74 REMARK 500 1 THR B 321 40.15 -93.54 REMARK 500 1 SER B 327 -74.48 -51.30 REMARK 500 1 ASP B 328 -169.67 -171.13 REMARK 500 1 THR B 329 -41.15 -136.31 REMARK 500 1 THR B 330 -178.90 -173.20 REMARK 500 2 ASN A 3 -65.55 72.96 REMARK 500 2 LYS A 4 81.29 46.36 REMARK 500 2 ALA A 13 171.21 73.99 REMARK 500 2 LYS A 15 -86.14 64.37 REMARK 500 2 THR A 22 -30.80 -139.89 REMARK 500 2 ARG A 23 -75.96 -40.95 REMARK 500 2 ILE A 41 -71.16 -139.64 REMARK 500 2 ALA A 42 -172.18 -60.19 REMARK 500 2 ASN A 45 88.20 -67.46 REMARK 500 2 ARG A 57 88.65 -164.11 REMARK 500 2 PRO A 62 -170.31 -69.75 REMARK 500 2 ASP A 67 -74.56 -97.91 REMARK 500 REMARK 500 THIS ENTRY HAS 741 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30094 RELATED DB: BMRB DBREF 5JZR A 1 131 UNP Q9AZ42 Q9AZ42_9VIRU 1 131 DBREF 5JZR B 201 331 UNP Q9AZ42 Q9AZ42_9VIRU 1 131 SEQRES 1 A 131 MET ALA ASN LYS PRO MET GLN PRO ILE THR SER THR ALA SEQRES 2 A 131 ASN LYS ILE VAL TRP SER ASP PRO THR ARG LEU SER THR SEQRES 3 A 131 THR PHE SER ALA SER LEU LEU ARG GLN ARG VAL LYS VAL SEQRES 4 A 131 GLY ILE ALA GLU LEU ASN ASN VAL SER GLY GLN TYR VAL SEQRES 5 A 131 SER VAL TYR LYS ARG PRO ALA PRO LYS PRO GLU GLY CYS SEQRES 6 A 131 ALA ASP ALA CYS VAL ILE MET PRO ASN GLU ASN GLN SER SEQRES 7 A 131 ILE ARG THR VAL ILE SER GLY SER ALA GLU ASN LEU ALA SEQRES 8 A 131 THR LEU LYS ALA GLU TRP GLU THR HIS LYS ARG ASN VAL SEQRES 9 A 131 ASP THR LEU PHE ALA SER GLY ASN ALA GLY LEU GLY PHE SEQRES 10 A 131 LEU ASP PRO THR ALA ALA ILE VAL SER SER ASP THR THR SEQRES 11 A 131 ALA SEQRES 1 B 131 MET ALA ASN LYS PRO MET GLN PRO ILE THR SER THR ALA SEQRES 2 B 131 ASN LYS ILE VAL TRP SER ASP PRO THR ARG LEU SER THR SEQRES 3 B 131 THR PHE SER ALA SER LEU LEU ARG GLN ARG VAL LYS VAL SEQRES 4 B 131 GLY ILE ALA GLU LEU ASN ASN VAL SER GLY GLN TYR VAL SEQRES 5 B 131 SER VAL TYR LYS ARG PRO ALA PRO LYS PRO GLU GLY CYS SEQRES 6 B 131 ALA ASP ALA CYS VAL ILE MET PRO ASN GLU ASN GLN SER SEQRES 7 B 131 ILE ARG THR VAL ILE SER GLY SER ALA GLU ASN LEU ALA SEQRES 8 B 131 THR LEU LYS ALA GLU TRP GLU THR HIS LYS ARG ASN VAL SEQRES 9 B 131 ASP THR LEU PHE ALA SER GLY ASN ALA GLY LEU GLY PHE SEQRES 10 B 131 LEU ASP PRO THR ALA ALA ILE VAL SER SER ASP THR THR SEQRES 11 B 131 ALA HELIX 1 AA1 GLU A 88 GLY A 111 1 24 HELIX 2 AA2 ASN A 112 GLY A 116 5 5 HELIX 3 AA3 ALA B 287 GLY B 311 1 25 HELIX 4 AA4 ASN B 312 GLY B 316 5 5 SHEET 1 AA1 2 LYS A 4 PRO A 5 0 SHEET 2 AA1 2 VAL B 325 SER B 326 -1 O SER B 326 N LYS A 4 SHEET 1 AA210 GLN A 7 PRO A 8 0 SHEET 2 AA210 VAL A 17 SER A 19 -1 O SER A 19 N GLN A 7 SHEET 3 AA210 THR A 27 SER A 31 -1 O PHE A 28 N TRP A 18 SHEET 4 AA210 ASN A 46 PRO A 58 -1 O GLN A 50 N SER A 31 SHEET 5 AA210 ASN A 74 SER A 86 -1 O THR A 81 N TYR A 51 SHEET 6 AA210 ASN B 274 SER B 286 -1 O ARG B 280 N VAL A 82 SHEET 7 AA210 ASN B 246 PRO B 258 -1 N TYR B 251 O THR B 281 SHEET 8 AA210 THR B 227 SER B 231 -1 N THR B 227 O VAL B 254 SHEET 9 AA210 ILE B 216 SER B 219 -1 N TRP B 218 O PHE B 228 SHEET 10 AA210 GLN B 207 PRO B 208 -1 N GLN B 207 O SER B 219 SHEET 1 AA3 2 VAL A 125 SER A 126 0 SHEET 2 AA3 2 LYS B 204 PRO B 205 -1 O LYS B 204 N SER A 126 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1