HEADER    OXIDOREDUCTASE                          18-MAY-16   5K1W              
TITLE     CRYSTAL STRUCTURE OF OXIDIZED SHEWANELLA YELLOW ENZYME 4 (SYE4) IN    
TITLE    2 COMPLEX WITH TRINITROPHENOL                                          
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: NAD(P)H:FLAVIN OXIDOREDUCTASE SYE4;                        
COMPND   3 CHAIN: A;                                                            
COMPND   4 EC: 1.5.1.30;                                                        
COMPND   5 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS (STRAIN MR-1);            
SOURCE   3 ORGANISM_TAXID: 211586;                                              
SOURCE   4 GENE: SYE4, SO_3392;                                                 
SOURCE   5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);                       
SOURCE   6 EXPRESSION_SYSTEM_TAXID: 469008;                                     
SOURCE   7 EXPRESSION_SYSTEM_PLASMID: PACYC-DUET                                
KEYWDS    OXIDOREDUCTASE, COFACTOR-BINDING                                      
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    J.ELEGHEERT,A.BRIGE,S.N.SAVVIDES                                      
REVDAT   5   10-JAN-24 5K1W    1       REMARK                                   
REVDAT   4   17-JUL-19 5K1W    1       REMARK                                   
REVDAT   3   08-NOV-17 5K1W    1       JRNL                                     
REVDAT   2   27-SEP-17 5K1W    1       JRNL                                     
REVDAT   1   07-JUN-17 5K1W    0                                                
JRNL        AUTH   J.ELEGHEERT,A.BRIGE,J.VAN BEEUMEN,S.N.SAVVIDES               
JRNL        TITL   STRUCTURAL DISSECTION OF SHEWANELLA ONEIDENSIS OLD YELLOW    
JRNL        TITL 2 ENZYME 4 BOUND TO A MEISENHEIMER COMPLEX AND (NITRO)PHENOLIC 
JRNL        TITL 3 LIGANDS.                                                     
JRNL        REF    FEBS LETT.                    V. 591  3391 2017              
JRNL        REFN                   ISSN 1873-3468                               
JRNL        PMID   28869767                                                     
JRNL        DOI    10.1002/1873-3468.12833                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    1.60 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX 1.8_1069                                      
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 24.25                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 2.010                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.0                           
REMARK   3   NUMBER OF REFLECTIONS             : 39489                          
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.140                           
REMARK   3   R VALUE            (WORKING SET) : 0.138                           
REMARK   3   FREE R VALUE                     : 0.170                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.870                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 1925                            
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3     1 24.2512 -  3.8514    1.00     2908   143  0.1494 0.1675        
REMARK   3     2  3.8514 -  3.0589    0.99     2732   147  0.1178 0.1248        
REMARK   3     3  3.0589 -  2.6728    1.00     2732   149  0.1269 0.1495        
REMARK   3     4  2.6728 -  2.4287    1.00     2699   143  0.1247 0.1610        
REMARK   3     5  2.4287 -  2.2548    0.99     2687   141  0.1219 0.1897        
REMARK   3     6  2.2548 -  2.1219    0.99     2706   113  0.1177 0.1669        
REMARK   3     7  2.1219 -  2.0157    0.99     2670   140  0.1212 0.1461        
REMARK   3     8  2.0157 -  1.9280    0.99     2653   141  0.1258 0.1743        
REMARK   3     9  1.9280 -  1.8538    0.99     2652   128  0.1329 0.1645        
REMARK   3    10  1.8538 -  1.7898    0.99     2647   148  0.1495 0.1944        
REMARK   3    11  1.7898 -  1.7339    0.99     2615   137  0.1599 0.2120        
REMARK   3    12  1.7339 -  1.6843    0.99     2646   143  0.1827 0.2330        
REMARK   3    13  1.6843 -  1.6400    0.98     2629   126  0.1941 0.2432        
REMARK   3    14  1.6400 -  1.6000    0.97     2588   126  0.2206 0.2499        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.120            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.690           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.005           2987                                  
REMARK   3   ANGLE     :  1.029           4089                                  
REMARK   3   CHIRALITY :  0.060            456                                  
REMARK   3   PLANARITY :  0.006            533                                  
REMARK   3   DIHEDRAL  : 13.611           1112                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 5K1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-16.                  
REMARK 100 THE DEPOSITION ID IS D_1000221607.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 08-DEC-07                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : 6.3                                
REMARK 200  NUMBER OF CRYSTALS USED        : 1                                  
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : EMBL/DESY, HAMBURG                 
REMARK 200  BEAMLINE                       : X11                                
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.8148                             
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : IMAGE PLATE                        
REMARK 200  DETECTOR MANUFACTURER          : MAR555 FLAT PANEL                  
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : XDS                                
REMARK 200  DATA SCALING SOFTWARE          : XSCALE                             
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 39489                              
REMARK 200  RESOLUTION RANGE HIGH      (A) : 1.600                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 25.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 98.9                               
REMARK 200  DATA REDUNDANCY                : 6.900                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : 0.06600                            
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 24.6000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : 1.64                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : 0.42300                            
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT        
REMARK 200 SOFTWARE USED: PHASER                                                
REMARK 200 STARTING MODEL: 4B5N                                                 
REMARK 200                                                                      
REMARK 200 REMARK: CLOTHES PIN                                                  
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 34.92                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM CITRATE TRIBASIC            
REMARK 280  DIHYDRATE PH 6.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K   
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21                       
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X+1/2,-Y,Z+1/2                                         
REMARK 290       3555   -X,Y+1/2,-Z+1/2                                         
REMARK 290       4555   X+1/2,-Y+1/2,-Z                                         
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000       26.09000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       51.75000            
REMARK 290   SMTRY1   3 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   3  0.000000  1.000000  0.000000       27.38500            
REMARK 290   SMTRY3   3  0.000000  0.000000 -1.000000       51.75000            
REMARK 290   SMTRY1   4  1.000000  0.000000  0.000000       26.09000            
REMARK 290   SMTRY2   4  0.000000 -1.000000  0.000000       27.38500            
REMARK 290   SMTRY3   4  0.000000  0.000000 -1.000000        0.00000            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC                  
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 13250 ANGSTROM**2                       
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 465                                                                      
REMARK 465 MISSING RESIDUES                                                     
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE                       
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)                
REMARK 465                                                                      
REMARK 465   M RES C SSSEQI                                                     
REMARK 465     MET A     1                                                      
REMARK 470                                                                      
REMARK 470 MISSING ATOM                                                         
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;           
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;          
REMARK 470 I=INSERTION CODE):                                                   
REMARK 470   M RES CSSEQI  ATOMS                                                
REMARK 470     GLU A  11    CG   CD   OE1  OE2                                  
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT                     
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   O    HOH A   562     O    HOH A   827              2.01            
REMARK 500   O    HOH A   619     O    HOH A   783              2.11            
REMARK 500   O    HOH A   780     O    HOH A   809              2.12            
REMARK 500   O    HOH A   854     O    HOH A   864              2.19            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC             
REMARK 500 SYMMETRY ARE IN CLOSE CONTACT.  AN ATOM LOCATED WITHIN 0.15          
REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A           
REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375             
REMARK 500 INSTEAD OF REMARK 500.  ATOMS WITH NON-BLANK ALTERNATE               
REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS.            
REMARK 500                                                                      
REMARK 500 DISTANCE CUTOFF:                                                     
REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS              
REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS                  
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI  SSYMOP   DISTANCE          
REMARK 500   O    HOH A   505     O    HOH A   535     3545     2.10            
REMARK 500   O    HOH A   889     O    HOH A   918     4545     2.10            
REMARK 500   O    HOH A   902     O    HOH A   917     3555     2.14            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500    ASN A   8       34.61    -94.60                                   
REMARK 500    ASN A  20     -171.93   -172.16                                   
REMARK 500    GLU A  65      150.94    -49.88                                   
REMARK 500    ILE A  82       46.93   -145.13                                   
REMARK 500    ILE A  82       42.97   -143.24                                   
REMARK 500    ASP A 202     -157.89    -96.50                                   
REMARK 500    TYR A 240      -26.68   -157.14                                   
REMARK 500    ASP A 332       30.66    -95.60                                   
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 525                                                                      
REMARK 525 SOLVENT                                                              
REMARK 525                                                                      
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT                    
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST                  
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT                 
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE                       
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;                             
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE                  
REMARK 525 NUMBER; I=INSERTION CODE):                                           
REMARK 525                                                                      
REMARK 525  M RES CSSEQI                                                        
REMARK 525    HOH A 932        DISTANCE =  6.52 ANGSTROMS                       
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC2                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue TNF A 402                 
REMARK 800                                                                      
REMARK 800 SITE_IDENTIFIER: AC3                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue 8K6 A 403                 
DBREF  5K1W A    1   355  UNP    Q8EBV3   Q8EBV3_SHEON     1    355             
SEQADV 5K1W VAL A  171  UNP  Q8EBV3    ALA   171 CONFLICT                       
SEQRES   1 A  355  MET THR ILE GLU ASN THR VAL ASN SER VAL GLU ASN LEU          
SEQRES   2 A  355  PHE ASP THR TYR LYS LEU ASN ASP THR ILE THR LEU LYS          
SEQRES   3 A  355  ASN ARG ILE LEU MET ALA PRO LEU THR ARG CYS MET ALA          
SEQRES   4 A  355  ASP ALA ASN LEU VAL PRO THR ASP ASP MET VAL ALA TYR          
SEQRES   5 A  355  TYR ALA ARG ARG ALA GLU ALA GLY LEU ILE ILE SER GLU          
SEQRES   6 A  355  ALA THR ILE ILE ARG PRO ASP ALA GLN GLY TYR PRO ASN          
SEQRES   7 A  355  THR PRO GLY ILE PHE THR GLN ALA GLN ILE ALA GLY TRP          
SEQRES   8 A  355  ARG LYS VAL THR ASP ALA VAL HIS ALA ASN GLY GLY LYS          
SEQRES   9 A  355  ILE PHE VAL GLN LEU TRP HIS THR GLY ARG VAL ALA HIS          
SEQRES  10 A  355  PRO HIS PHE PHE GLY GLY GLY ASP VAL LEU ALA PRO SER          
SEQRES  11 A  355  ALA GLN LYS ILE GLU GLY SER VAL PRO ARG MET ARG GLU          
SEQRES  12 A  355  LEU THR TYR VAL THR PRO LYS ALA VAL THR VAL GLU ASP          
SEQRES  13 A  355  ILE GLN GLY LEU VAL ARG ASP TYR ALA LYS ALA ALA GLU          
SEQRES  14 A  355  ASN VAL ILE GLU ALA GLY PHE ASP GLY VAL GLU ILE HIS          
SEQRES  15 A  355  GLY ALA ASN GLY TYR LEU ILE ASP GLN PHE LEU HIS HIS          
SEQRES  16 A  355  ASP SER ASN ARG ARG THR ASP GLU TYR GLY GLY THR PRO          
SEQRES  17 A  355  VAL ASN MET SER ARG PHE ALA LEU GLU VAL VAL ASP ALA          
SEQRES  18 A  355  ILE ILE ALA ARG ILE GLY HIS ASP ARG THR GLY LEU ARG          
SEQRES  19 A  355  ILE SER PRO GLY ALA TYR PHE ASN MET ALA SER ASP SER          
SEQRES  20 A  355  ARG ASP ARG VAL VAL PHE ASP TYR LEU LEU PRO GLU LEU          
SEQRES  21 A  355  GLU LYS ARG ASP LEU ALA PHE VAL HIS ILE GLY ILE PHE          
SEQRES  22 A  355  ASP ASP SER ILE GLU PHE ASP TYR LEU GLY GLY THR ALA          
SEQRES  23 A  355  SER SER TYR VAL ARG ALA HIS TYR GLY LYS THR LEU VAL          
SEQRES  24 A  355  GLY VAL GLY SER TYR SER ALA GLU THR ALA SER LYS ALA          
SEQRES  25 A  355  ILE ALA GLU ASP LYS PHE ASP LEU ILE ALA ILE GLY ARG          
SEQRES  26 A  355  PRO PHE ILE ALA ASN PRO ASP TYR VAL ALA LYS VAL ARG          
SEQRES  27 A  355  ASN SER GLU GLU LEU VAL ALA TYR SER ASP GLU MET LEU          
SEQRES  28 A  355  ALA SER LEU ILE                                              
HET    FMN  A 401      31                                                       
HET    TNF  A 402      16                                                       
HET    8K6  A 403      18                                                       
HETNAM     FMN FLAVIN MONONUCLEOTIDE                                            
HETNAM     TNF PICRIC ACID                                                      
HETNAM     8K6 OCTADECANE                                                       
HETSYN     FMN RIBOFLAVIN MONOPHOSPHATE                                         
HETSYN     TNF 2,4,6-TRINITROPHENOL                                             
HETSYN     8K6 N-OCTADECANE                                                     
FORMUL   2  FMN    C17 H21 N4 O9 P                                              
FORMUL   3  TNF    C6 H3 N3 O7                                                  
FORMUL   4  8K6    C18 H38                                                      
FORMUL   5  HOH   *432(H2 O)                                                    
HELIX    1 AA1 VAL A   10  ASP A   15  5                                   6    
HELIX    2 AA2 THR A   46  ARG A   55  1                                  10    
HELIX    3 AA3 ARG A   70  GLN A   74  5                                   5    
HELIX    4 AA4 THR A   84  ASN A  101  1                                  18    
HELIX    5 AA5 THR A  112  ALA A  116  5                                   5    
HELIX    6 AA6 HIS A  117  PHE A  121  5                                   5    
HELIX    7 AA7 THR A  153  ALA A  174  1                                  22    
HELIX    8 AA8 TYR A  187  HIS A  194  1                                   8    
HELIX    9 AA9 THR A  207  SER A  212  1                                   6    
HELIX   10 AB1 SER A  212  GLY A  227  1                                  16    
HELIX   11 AB2 ARG A  248  ARG A  263  1                                  16    
HELIX   12 AB3 ALA A  286  TYR A  294  1                                   9    
HELIX   13 AB4 SER A  305  GLU A  315  1                                  11    
HELIX   14 AB5 GLY A  324  ASN A  330  1                                   7    
HELIX   15 AB6 ASP A  332  ASN A  339  1                                   8    
HELIX   16 AB7 SER A  347  SER A  353  5                                   7    
SHEET    1 AA1 2 TYR A  17  LYS A  18  0                                        
SHEET    2 AA1 2 THR A  24  LEU A  25 -1  O  LEU A  25   N  TYR A  17           
SHEET    1 AA2 9 ILE A  29  MET A  31  0                                        
SHEET    2 AA2 9 LEU A  61  ILE A  68  1  O  LEU A  61   N  MET A  31           
SHEET    3 AA2 9 ILE A 105  TRP A 110  1  O  PHE A 106   N  ILE A  62           
SHEET    4 AA2 9 GLY A 178  GLY A 183  1  O  GLU A 180   N  VAL A 107           
SHEET    5 AA2 9 THR A 231  ILE A 235  1  O  GLY A 232   N  VAL A 179           
SHEET    6 AA2 9 PHE A 267  ILE A 270  1  O  HIS A 269   N  ILE A 235           
SHEET    7 AA2 9 LEU A 298  GLY A 300  1  O  VAL A 299   N  VAL A 268           
SHEET    8 AA2 9 LEU A 320  ILE A 323  1  O  ALA A 322   N  GLY A 300           
SHEET    9 AA2 9 ILE A  29  MET A  31  1  N  LEU A  30   O  ILE A 321           
SHEET    1 AA3 2 LEU A 127  ALA A 128  0                                        
SHEET    2 AA3 2 LYS A 150  ALA A 151  1  O  LYS A 150   N  ALA A 128           
SHEET    1 AA4 2 GLU A 278  PHE A 279  0                                        
SHEET    2 AA4 2 GLY A 284  THR A 285 -1  O  GLY A 284   N  PHE A 279           
SITE     1 AC1 21 ALA A  32  PRO A  33  LEU A  34  THR A  35                    
SITE     2 AC1 21 ALA A  66  GLN A 108  HIS A 182  ASN A 185                    
SITE     3 AC1 21 ARG A 234  ILE A 272  PHE A 273  VAL A 301                    
SITE     4 AC1 21 SER A 303  GLY A 324  ARG A 325  LEU A 351                    
SITE     5 AC1 21 TNF A 402  HOH A 574  HOH A 576  HOH A 642                    
SITE     6 AC1 21 HOH A 650                                                     
SITE     1 AC2 11 THR A  35  ALA A  66  TYR A  76  TRP A 110                    
SITE     2 AC2 11 HIS A 182  ASN A 185  TYR A 187  PHE A 241                    
SITE     3 AC2 11 PHE A 273  FMN A 401  8K6 A 403                               
SITE     1 AC3 12 MET A  38  ALA A  39  ASP A  40  ALA A  41                    
SITE     2 AC3 12 ASN A  42  ARG A 140  TYR A 240  LEU A 351                    
SITE     3 AC3 12 TNF A 402  HOH A 661  HOH A 818  HOH A 846                    
CRYST1   52.180   54.770  103.500  90.00  90.00  90.00 P 21 21 21    4          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.019164  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.018258  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.009662        0.00000