HEADER LIGASE 18-MAY-16 5K1X TITLE CATALYTIC DOMAIN OF POLYSPECIFIC PYRROLYSYL-TRNA SYNTHETASE MUTANT TITLE 2 Y306A/N346A/C348A/Y384F IN COMPLEX WITH AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRROLYSINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 188-454); COMPND 5 SYNONYM: PYRROLYSINE--TRNA(PYL) LIGASE,PYRROLYSYL-TRNA SYNTHETASE, COMPND 6 PYLRS; COMPND 7 EC: 6.1.1.26; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 OTHER_DETAILS: C-TERMINAL FRAGMENT, RESIDUES 188-454 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI; SOURCE 3 ORGANISM_TAXID: 2209; SOURCE 4 GENE: PYLS, MM_1445; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PROTEIN ENGINEERING, AMINOACYL-TRNA SYNTHETASE, NONCANONICAL AMINO KEYWDS 2 ACIDS, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.WEBER REVDAT 5 06-MAR-24 5K1X 1 LINK REVDAT 4 27-NOV-19 5K1X 1 REMARK REVDAT 3 27-SEP-17 5K1X 1 REMARK REVDAT 2 02-NOV-16 5K1X 1 JRNL REVDAT 1 19-OCT-16 5K1X 0 JRNL AUTH Y.J.LEE,M.J.SCHMIDT,J.M.THARP,A.WEBER,A.L.KOENIG,H.ZHENG, JRNL AUTH 2 J.GAO,M.L.WATERS,D.SUMMERER,W.R.LIU JRNL TITL GENETICALLY ENCODED FLUOROPHENYLALANINES ENABLE INSIGHTS JRNL TITL 2 INTO THE RECOGNITION OF LYSINE TRIMETHYLATION BY AN JRNL TITL 3 EPIGENETIC READER. JRNL REF CHEM.COMMUN.(CAMB.) V. 52 12606 2016 JRNL REFN ESSN 1364-548X JRNL PMID 27711380 JRNL DOI 10.1039/C6CC05959G REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2341: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 19526 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1904 - 3.7298 0.99 2863 169 0.1717 0.2007 REMARK 3 2 3.7298 - 2.9606 1.00 2839 140 0.1775 0.1917 REMARK 3 3 2.9606 - 2.5864 1.00 2810 150 0.1921 0.2348 REMARK 3 4 2.5864 - 2.3500 1.00 2827 135 0.2113 0.2611 REMARK 3 5 2.3500 - 2.1816 0.99 2775 149 0.2318 0.2834 REMARK 3 6 2.1816 - 2.0529 0.91 2550 118 0.2813 0.3179 REMARK 3 7 2.0529 - 1.9501 0.68 1900 101 0.3447 0.3753 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2266 REMARK 3 ANGLE : 0.765 3054 REMARK 3 CHIRALITY : 0.049 331 REMARK 3 PLANARITY : 0.004 392 REMARK 3 DIHEDRAL : 13.750 1383 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 189 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.2821 7.2857 50.6436 REMARK 3 T TENSOR REMARK 3 T11: 0.3202 T22: 0.5291 REMARK 3 T33: 0.4372 T12: -0.0072 REMARK 3 T13: 0.0577 T23: -0.0682 REMARK 3 L TENSOR REMARK 3 L11: 1.8149 L22: 1.4585 REMARK 3 L33: 2.8142 L12: -1.4856 REMARK 3 L13: -1.1020 L23: 1.6242 REMARK 3 S TENSOR REMARK 3 S11: -0.1359 S12: 0.1507 S13: -0.3213 REMARK 3 S21: 0.2073 S22: -0.3343 S23: 0.7815 REMARK 3 S31: 0.2696 S32: -0.8047 S33: 0.4471 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 216 THROUGH 256 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.7570 -2.3190 43.3631 REMARK 3 T TENSOR REMARK 3 T11: 0.2598 T22: 0.2282 REMARK 3 T33: 0.2752 T12: -0.0357 REMARK 3 T13: -0.0028 T23: 0.0090 REMARK 3 L TENSOR REMARK 3 L11: 0.5837 L22: 0.5199 REMARK 3 L33: 2.3763 L12: -0.0893 REMARK 3 L13: -0.3204 L23: -0.3396 REMARK 3 S TENSOR REMARK 3 S11: -0.1956 S12: -0.0295 S13: -0.1548 REMARK 3 S21: 0.1286 S22: 0.0184 S23: -0.0153 REMARK 3 S31: 0.4189 S32: -0.2079 S33: 0.1693 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 329 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8185 13.6109 18.6101 REMARK 3 T TENSOR REMARK 3 T11: 0.2774 T22: 0.2193 REMARK 3 T33: 0.2666 T12: -0.0207 REMARK 3 T13: -0.0148 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 1.5558 L22: 1.3131 REMARK 3 L33: 1.9079 L12: -0.2122 REMARK 3 L13: -0.5174 L23: 0.4099 REMARK 3 S TENSOR REMARK 3 S11: -0.0313 S12: 0.1215 S13: 0.2078 REMARK 3 S21: -0.1749 S22: 0.0585 S23: 0.0568 REMARK 3 S31: -0.2936 S32: -0.0545 S33: -0.0134 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 330 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4624 6.4495 23.1693 REMARK 3 T TENSOR REMARK 3 T11: 0.2238 T22: 0.2665 REMARK 3 T33: 0.2637 T12: 0.0161 REMARK 3 T13: -0.0137 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 1.1683 L22: 0.4658 REMARK 3 L33: 2.1670 L12: 0.3943 REMARK 3 L13: -0.1338 L23: 0.1877 REMARK 3 S TENSOR REMARK 3 S11: -0.0928 S12: 0.1119 S13: 0.0348 REMARK 3 S21: -0.0644 S22: 0.0412 S23: 0.0795 REMARK 3 S31: -0.0763 S32: -0.3962 S33: 0.0158 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K1X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221604. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19540 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 43.180 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.10950 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.4500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 63.0 REMARK 200 DATA REDUNDANCY IN SHELL : 1.50 REMARK 200 R MERGE FOR SHELL (I) : 0.90280 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.670 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRISHCL, 0.2M MGCL2, 18% (W/V) REMARK 280 PEG4000, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.00850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.00850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -11.17819 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 63.33005 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 187 REMARK 465 PRO A 188 REMARK 465 HIS A 457 REMARK 465 HIS A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 689 O HOH A 715 2.01 REMARK 500 O HOH A 679 O HOH A 715 2.01 REMARK 500 O HOH A 660 O HOH A 724 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 693 O HOH A 718 4446 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 207 65.55 -108.53 REMARK 500 GLU A 238 -64.18 -128.85 REMARK 500 ASP A 292 -160.04 57.43 REMARK 500 ALA A 315 -35.01 -134.24 REMARK 500 ASN A 453 78.05 -100.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 396 OE2 REMARK 620 2 SER A 399 OG 89.8 REMARK 620 3 ANP A 501 O1B 87.2 171.1 REMARK 620 4 ANP A 501 O1A 95.1 99.7 89.0 REMARK 620 5 HOH A 636 O 88.6 85.9 85.7 173.4 REMARK 620 6 HOH A 651 O 174.4 92.1 90.1 89.7 86.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 503 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ANP A 501 O2G REMARK 620 2 ANP A 501 O2B 81.0 REMARK 620 3 HOH A 620 O 79.2 93.5 REMARK 620 4 HOH A 643 O 88.3 169.1 82.6 REMARK 620 5 HOH A 647 O 171.0 96.7 92.3 93.6 REMARK 620 6 HOH A 703 O 90.3 87.7 169.0 94.2 98.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ANP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 506 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K1P RELATED DB: PDB DBREF 5K1X A 188 454 UNP Q8PWY1 PYLS_METMA 188 454 SEQADV 5K1X MET A 187 UNP Q8PWY1 INITIATING METHIONINE SEQADV 5K1X ALA A 306 UNP Q8PWY1 TYR 306 ENGINEERED MUTATION SEQADV 5K1X ALA A 346 UNP Q8PWY1 ASN 346 ENGINEERED MUTATION SEQADV 5K1X ALA A 348 UNP Q8PWY1 CYS 348 ENGINEERED MUTATION SEQADV 5K1X PHE A 384 UNP Q8PWY1 TYR 384 ENGINEERED MUTATION SEQADV 5K1X HIS A 455 UNP Q8PWY1 EXPRESSION TAG SEQADV 5K1X HIS A 456 UNP Q8PWY1 EXPRESSION TAG SEQADV 5K1X HIS A 457 UNP Q8PWY1 EXPRESSION TAG SEQADV 5K1X HIS A 458 UNP Q8PWY1 EXPRESSION TAG SEQADV 5K1X HIS A 459 UNP Q8PWY1 EXPRESSION TAG SEQADV 5K1X HIS A 460 UNP Q8PWY1 EXPRESSION TAG SEQRES 1 A 274 MET PRO ALA LEU THR LYS SER GLN THR ASP ARG LEU GLU SEQRES 2 A 274 VAL LEU LEU ASN PRO LYS ASP GLU ILE SER LEU ASN SER SEQRES 3 A 274 GLY LYS PRO PHE ARG GLU LEU GLU SER GLU LEU LEU SER SEQRES 4 A 274 ARG ARG LYS LYS ASP LEU GLN GLN ILE TYR ALA GLU GLU SEQRES 5 A 274 ARG GLU ASN TYR LEU GLY LYS LEU GLU ARG GLU ILE THR SEQRES 6 A 274 ARG PHE PHE VAL ASP ARG GLY PHE LEU GLU ILE LYS SER SEQRES 7 A 274 PRO ILE LEU ILE PRO LEU GLU TYR ILE GLU ARG MET GLY SEQRES 8 A 274 ILE ASP ASN ASP THR GLU LEU SER LYS GLN ILE PHE ARG SEQRES 9 A 274 VAL ASP LYS ASN PHE CYS LEU ARG PRO MET LEU ALA PRO SEQRES 10 A 274 ASN LEU ALA ASN TYR LEU ARG LYS LEU ASP ARG ALA LEU SEQRES 11 A 274 PRO ASP PRO ILE LYS ILE PHE GLU ILE GLY PRO CYS TYR SEQRES 12 A 274 ARG LYS GLU SER ASP GLY LYS GLU HIS LEU GLU GLU PHE SEQRES 13 A 274 THR MET LEU ALA PHE ALA GLN MET GLY SER GLY CYS THR SEQRES 14 A 274 ARG GLU ASN LEU GLU SER ILE ILE THR ASP PHE LEU ASN SEQRES 15 A 274 HIS LEU GLY ILE ASP PHE LYS ILE VAL GLY ASP SER CYS SEQRES 16 A 274 MET VAL PHE GLY ASP THR LEU ASP VAL MET HIS GLY ASP SEQRES 17 A 274 LEU GLU LEU SER SER ALA VAL VAL GLY PRO ILE PRO LEU SEQRES 18 A 274 ASP ARG GLU TRP GLY ILE ASP LYS PRO TRP ILE GLY ALA SEQRES 19 A 274 GLY PHE GLY LEU GLU ARG LEU LEU LYS VAL LYS HIS ASP SEQRES 20 A 274 PHE LYS ASN ILE LYS ARG ALA ALA ARG SER GLU SER TYR SEQRES 21 A 274 TYR ASN GLY ILE SER THR ASN LEU HIS HIS HIS HIS HIS SEQRES 22 A 274 HIS HET ANP A 501 31 HET MG A 502 1 HET MG A 503 1 HET EDO A 504 4 HET PEG A 505 7 HET CL A 506 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 MG 2(MG 2+) FORMUL 5 EDO C2 H6 O2 FORMUL 6 PEG C4 H10 O3 FORMUL 7 CL CL 1- FORMUL 8 HOH *137(H2 O) HELIX 1 AA1 THR A 191 LEU A 202 1 12 HELIX 2 AA2 PRO A 215 GLU A 238 1 24 HELIX 3 AA3 ASN A 241 ARG A 257 1 17 HELIX 4 AA4 LEU A 270 MET A 276 1 7 HELIX 5 AA5 THR A 282 ILE A 288 5 7 HELIX 6 AA6 LEU A 301 ASP A 313 1 13 HELIX 7 AA7 THR A 355 GLY A 371 1 17 HELIX 8 AA8 ILE A 405 GLY A 412 5 8 HELIX 9 AA9 LEU A 424 ASP A 433 1 10 HELIX 10 AB1 ASN A 436 ALA A 441 5 6 SHEET 1 AA1 7 LEU A 260 ILE A 262 0 SHEET 2 AA1 7 ILE A 320 TYR A 329 1 O LYS A 321 N LEU A 260 SHEET 3 AA1 7 GLU A 341 MET A 350 -1 O ALA A 348 N ILE A 322 SHEET 4 AA1 7 TRP A 417 GLY A 423 -1 O PHE A 422 N LEU A 345 SHEET 5 AA1 7 LEU A 395 VAL A 402 -1 N VAL A 401 O GLY A 419 SHEET 6 AA1 7 GLY A 385 HIS A 392 -1 N VAL A 390 O LEU A 397 SHEET 7 AA1 7 LYS A 375 CYS A 381 -1 N ASP A 379 O THR A 387 SHEET 1 AA2 3 LEU A 267 PRO A 269 0 SHEET 2 AA2 3 PHE A 295 LEU A 297 -1 O CYS A 296 N ILE A 268 SHEET 3 AA2 3 PHE A 289 VAL A 291 -1 N VAL A 291 O PHE A 295 SHEET 1 AA3 2 TYR A 446 TYR A 447 0 SHEET 2 AA3 2 ILE A 450 SER A 451 -1 O ILE A 450 N TYR A 447 LINK OE2 GLU A 396 MG MG A 502 1555 1555 2.15 LINK OG SER A 399 MG MG A 502 1555 1555 2.17 LINK O1B ANP A 501 MG MG A 502 1555 1555 2.00 LINK O1A ANP A 501 MG MG A 502 1555 1555 2.16 LINK O2G ANP A 501 MG MG A 503 1555 1555 2.05 LINK O2B ANP A 501 MG MG A 503 1555 1555 2.12 LINK MG MG A 502 O HOH A 636 1555 1555 2.13 LINK MG MG A 502 O HOH A 651 1555 1555 1.88 LINK MG MG A 503 O HOH A 620 1555 1555 2.15 LINK MG MG A 503 O HOH A 643 1555 1555 1.96 LINK MG MG A 503 O HOH A 647 1555 1555 1.96 LINK MG MG A 503 O HOH A 703 1555 1555 2.36 CISPEP 1 ASP A 318 PRO A 319 0 -1.68 CISPEP 2 GLY A 403 PRO A 404 0 0.06 SITE 1 AC1 26 ARG A 330 GLU A 332 HIS A 338 LEU A 339 SITE 2 AC1 26 PHE A 342 MET A 344 GLU A 396 LEU A 397 SITE 3 AC1 26 SER A 398 SER A 399 GLY A 421 GLY A 423 SITE 4 AC1 26 ARG A 426 MG A 502 MG A 503 HOH A 604 SITE 5 AC1 26 HOH A 620 HOH A 636 HOH A 643 HOH A 647 SITE 6 AC1 26 HOH A 651 HOH A 683 HOH A 684 HOH A 696 SITE 7 AC1 26 HOH A 703 HOH A 709 SITE 1 AC2 5 GLU A 396 SER A 399 ANP A 501 HOH A 636 SITE 2 AC2 5 HOH A 651 SITE 1 AC3 5 ANP A 501 HOH A 620 HOH A 643 HOH A 647 SITE 2 AC3 5 HOH A 703 SITE 1 AC4 6 TYR A 242 LYS A 245 GLU A 249 LEU A 428 SITE 2 AC4 6 LYS A 431 HIS A 432 SITE 1 AC5 4 LEU A 309 ILE A 413 TRP A 417 HOH A 644 SITE 1 AC6 4 MET A 300 LEU A 301 ALA A 302 MET A 344 CRYST1 102.017 44.140 64.309 90.00 100.01 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009802 0.000000 0.001731 0.00000 SCALE2 0.000000 0.022655 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015790 0.00000