HEADER HYDROLASE/TRANSPORTER PROTEIN/PROTEIN BI18-MAY-16 5K25 TITLE CRYSTAL STRUCTURE OF HUMAN PHOSPHATASE PRL-2 IN COMPLEX WITH THE ADP- TITLE 2 BOUND BATEMAN DOMAIN OF HUMAN MAGNESIUM TRANSPORTER CNNM3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN TYROSINE PHOSPHATASE TYPE IVA 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HU-PP-1,OV-1,PTP(CAAXII),PROTEIN-TYROSINE PHOSPHATASE 4A2, COMPND 5 PROTEIN-TYROSINE PHOSPHATASE OF REGENERATING LIVER 2,PRL-2; COMPND 6 EC: 3.1.3.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: METAL TRANSPORTER CNNM3; COMPND 10 CHAIN: C; COMPND 11 SYNONYM: ANCIENT CONSERVED DOMAIN-CONTAINING PROTEIN 3,CYCLIN-M3; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTP4A2, PRL2, PTPCAAX2, BM-008; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PDEST17; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: CNNM3, ACDP3; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PDEST15 KEYWDS COMPLEX, PHOSPHATASE, MAGNESIUM TRANSPORTER, PROTEIN BINDING, KEYWDS 2 HYDROLASE, HYDROLASE-TRANSPORTER PROTEIN-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.GULEREZ,G.KOZLOV,K.GEHRING REVDAT 2 03-OCT-18 5K25 1 JRNL REMARK REVDAT 1 12-OCT-16 5K25 0 JRNL AUTH H.ZHANG,G.KOZLOV,X.LI,H.WU,I.GULEREZ,K.GEHRING JRNL TITL PRL3 PHOSPHATASE ACTIVE SITE IS REQUIRED FOR BINDING THE JRNL TITL 2 PUTATIVE MAGNESIUM TRANSPORTER CNNM3. JRNL REF SCI REP V. 7 48 2017 JRNL REFN ESSN 2045-2322 JRNL PMID 28246390 JRNL DOI 10.1038/S41598-017-00147-2 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 10010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.232 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 503 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.06 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 716 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3920 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2418 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 3 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 92.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : 0.80000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.418 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.435 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.359 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.085 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2500 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3408 ; 0.839 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 390 ; 0.046 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1894 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1226 ; 2.126 ; 9.144 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1529 ; 3.746 ;13.710 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1273 ; 2.104 ; 9.290 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3071 ; 7.703 ;91.285 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220226. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9179 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10010 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.47600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.54 M SODIUM CITRATE, 0.1 M SODIUM REMARK 280 ACETATE, 10 MM ATP, 2.5 MM AMP, PH 5.0, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 26.07600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.20050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.15250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 26.07600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.20050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.15250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 26.07600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.20050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.15250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 26.07600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.20050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.15250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -52.15200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 602 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 603 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 SER A -21 REMARK 465 TYR A -20 REMARK 465 TYR A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 LEU A -12 REMARK 465 GLU A -11 REMARK 465 SER A -10 REMARK 465 THR A -9 REMARK 465 SER A -8 REMARK 465 LEU A -7 REMARK 465 TYR A -6 REMARK 465 LYS A -5 REMARK 465 LYS A -4 REMARK 465 ALA A -3 REMARK 465 GLY A -2 REMARK 465 ARG A 156 REMARK 465 PHE A 157 REMARK 465 ARG A 158 REMARK 465 ASP A 159 REMARK 465 THR A 160 REMARK 465 ASN A 161 REMARK 465 GLY A 162 REMARK 465 HIS A 163 REMARK 465 CYS A 164 REMARK 465 CYS A 165 REMARK 465 VAL A 166 REMARK 465 GLN A 167 REMARK 465 SER C 447 REMARK 465 GLU C 448 REMARK 465 ILE C 449 REMARK 465 LEU C 450 REMARK 465 ASP C 451 REMARK 465 GLU C 452 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 GLU A 124 CG CD OE1 OE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 GLN C 297 CG CD OE1 NE2 REMARK 470 LYS C 366 CG CD CE NZ REMARK 470 ARG C 408 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 0 -6.84 75.22 REMARK 500 TYR A 11 123.79 -176.75 REMARK 500 GLU A 12 -114.00 47.21 REMARK 500 CYS A 101 -167.50 -120.08 REMARK 500 LYS A 152 -85.96 -74.09 REMARK 500 GLU C 315 -37.93 -38.85 REMARK 500 ASN C 358 77.68 -109.84 REMARK 500 GLU C 374 62.71 39.23 REMARK 500 CYS C 376 85.82 -37.10 REMARK 500 ASN C 387 96.42 -63.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PRO A 4 ALA A 5 -143.79 REMARK 500 PRO A 22 THR A 23 144.77 REMARK 500 THR A 49 TYR A 50 139.99 REMARK 500 GLY A 120 MET A 121 -141.42 REMARK 500 GLY A 136 ALA A 137 -138.00 REMARK 500 LYS A 152 MET A 153 82.15 REMARK 500 MET A 153 ARG A 154 -147.06 REMARK 500 ARG A 154 LEU A 155 148.46 REMARK 500 GLN C 297 GLY C 298 113.82 REMARK 500 GLU C 353 GLU C 354 -61.81 REMARK 500 LEU C 368 ALA C 369 -147.37 REMARK 500 GLU C 374 ASP C 375 137.84 REMARK 500 ASP C 375 CYS C 376 -97.93 REMARK 500 TYR C 386 ASN C 387 137.65 REMARK 500 ASN C 387 HIS C 388 145.75 REMARK 500 ASP C 396 THR C 397 -149.03 REMARK 500 ARG C 408 GLY C 409 -134.81 REMARK 500 GLN C 417 LYS C 418 149.14 REMARK 500 GLU C 422 GLY C 423 -138.03 REMARK 500 ILE C 445 ARG C 446 147.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K22 RELATED DB: PDB REMARK 900 RELATED ID: 5K23 RELATED DB: PDB REMARK 900 RELATED ID: 5K24 RELATED DB: PDB DBREF 5K25 A 1 167 UNP Q12974 TP4A2_HUMAN 1 167 DBREF 5K25 C 309 452 UNP Q8NE01 CNNM3_HUMAN 309 452 SEQADV 5K25 MET A -22 UNP Q12974 INITIATING METHIONINE SEQADV 5K25 SER A -21 UNP Q12974 EXPRESSION TAG SEQADV 5K25 TYR A -20 UNP Q12974 EXPRESSION TAG SEQADV 5K25 TYR A -19 UNP Q12974 EXPRESSION TAG SEQADV 5K25 HIS A -18 UNP Q12974 EXPRESSION TAG SEQADV 5K25 HIS A -17 UNP Q12974 EXPRESSION TAG SEQADV 5K25 HIS A -16 UNP Q12974 EXPRESSION TAG SEQADV 5K25 HIS A -15 UNP Q12974 EXPRESSION TAG SEQADV 5K25 HIS A -14 UNP Q12974 EXPRESSION TAG SEQADV 5K25 HIS A -13 UNP Q12974 EXPRESSION TAG SEQADV 5K25 LEU A -12 UNP Q12974 EXPRESSION TAG SEQADV 5K25 GLU A -11 UNP Q12974 EXPRESSION TAG SEQADV 5K25 SER A -10 UNP Q12974 EXPRESSION TAG SEQADV 5K25 THR A -9 UNP Q12974 EXPRESSION TAG SEQADV 5K25 SER A -8 UNP Q12974 EXPRESSION TAG SEQADV 5K25 LEU A -7 UNP Q12974 EXPRESSION TAG SEQADV 5K25 TYR A -6 UNP Q12974 EXPRESSION TAG SEQADV 5K25 LYS A -5 UNP Q12974 EXPRESSION TAG SEQADV 5K25 LYS A -4 UNP Q12974 EXPRESSION TAG SEQADV 5K25 ALA A -3 UNP Q12974 EXPRESSION TAG SEQADV 5K25 GLY A -2 UNP Q12974 EXPRESSION TAG SEQADV 5K25 PHE A -1 UNP Q12974 EXPRESSION TAG SEQADV 5K25 ALA A 0 UNP Q12974 EXPRESSION TAG SEQADV 5K25 GLN C 297 UNP Q8NE01 EXPRESSION TAG SEQADV 5K25 GLY C 298 UNP Q8NE01 EXPRESSION TAG SEQADV 5K25 PRO C 299 UNP Q8NE01 EXPRESSION TAG SEQADV 5K25 LEU C 300 UNP Q8NE01 EXPRESSION TAG SEQADV 5K25 ASN C 301 UNP Q8NE01 EXPRESSION TAG SEQADV 5K25 MET C 302 UNP Q8NE01 EXPRESSION TAG SEQADV 5K25 ILE C 303 UNP Q8NE01 EXPRESSION TAG SEQADV 5K25 GLN C 304 UNP Q8NE01 EXPRESSION TAG SEQADV 5K25 GLY C 305 UNP Q8NE01 EXPRESSION TAG SEQADV 5K25 VAL C 306 UNP Q8NE01 EXPRESSION TAG SEQADV 5K25 LEU C 307 UNP Q8NE01 EXPRESSION TAG SEQADV 5K25 GLU C 308 UNP Q8NE01 EXPRESSION TAG SEQRES 1 A 190 MET SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER SEQRES 2 A 190 THR SER LEU TYR LYS LYS ALA GLY PHE ALA MET ASN ARG SEQRES 3 A 190 PRO ALA PRO VAL GLU ILE SER TYR GLU ASN MET ARG PHE SEQRES 4 A 190 LEU ILE THR HIS ASN PRO THR ASN ALA THR LEU ASN LYS SEQRES 5 A 190 PHE THR GLU GLU LEU LYS LYS TYR GLY VAL THR THR LEU SEQRES 6 A 190 VAL ARG VAL CYS ASP ALA THR TYR ASP LYS ALA PRO VAL SEQRES 7 A 190 GLU LYS GLU GLY ILE HIS VAL LEU ASP TRP PRO PHE ASP SEQRES 8 A 190 ASP GLY ALA PRO PRO PRO ASN GLN ILE VAL ASP ASP TRP SEQRES 9 A 190 LEU ASN LEU LEU LYS THR LYS PHE ARG GLU GLU PRO GLY SEQRES 10 A 190 CYS CYS VAL ALA VAL HIS CYS VAL ALA GLY LEU GLY ARG SEQRES 11 A 190 ALA PRO VAL LEU VAL ALA LEU ALA LEU ILE GLU CYS GLY SEQRES 12 A 190 MET LYS TYR GLU ASP ALA VAL GLN PHE ILE ARG GLN LYS SEQRES 13 A 190 ARG ARG GLY ALA PHE ASN SER LYS GLN LEU LEU TYR LEU SEQRES 14 A 190 GLU LYS TYR ARG PRO LYS MET ARG LEU ARG PHE ARG ASP SEQRES 15 A 190 THR ASN GLY HIS CYS CYS VAL GLN SEQRES 1 C 156 GLN GLY PRO LEU ASN MET ILE GLN GLY VAL LEU GLU LEU SEQRES 2 C 156 ARG CYS ARG THR VAL GLU ASP VAL LEU THR PRO LEU GLU SEQRES 3 C 156 ASP CYS PHE MET LEU ASP ALA SER THR VAL LEU ASP PHE SEQRES 4 C 156 GLY VAL LEU ALA SER ILE MET GLN SER GLY HIS THR ARG SEQRES 5 C 156 ILE PRO VAL TYR GLU GLU GLU ARG SER ASN ILE VAL ASP SEQRES 6 C 156 MET LEU TYR LEU LYS ASP LEU ALA PHE VAL ASP PRO GLU SEQRES 7 C 156 ASP CYS THR PRO LEU SER THR ILE THR ARG PHE TYR ASN SEQRES 8 C 156 HIS PRO LEU HIS PHE VAL PHE ASN ASP THR LYS LEU ASP SEQRES 9 C 156 ALA VAL LEU GLU GLU PHE LYS ARG GLY LYS SER HIS LEU SEQRES 10 C 156 ALA ILE VAL GLN LYS VAL ASN ASN GLU GLY GLU GLY ASP SEQRES 11 C 156 PRO PHE TYR GLU VAL LEU GLY LEU VAL THR LEU GLU ASP SEQRES 12 C 156 VAL ILE GLU GLU ILE ILE ARG SER GLU ILE LEU ASP GLU HET ADP C 501 27 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 HOH *3(H2 O) HELIX 1 AA1 THR A 23 ALA A 25 5 3 HELIX 2 AA2 THR A 26 GLY A 38 1 13 HELIX 3 AA3 LYS A 52 GLU A 58 1 7 HELIX 4 AA4 PRO A 74 GLU A 92 1 19 HELIX 5 AA5 GLY A 106 GLU A 118 1 13 HELIX 6 AA6 LYS A 122 ARG A 134 1 13 HELIX 7 AA7 ASN A 139 LYS A 148 1 10 HELIX 8 AA8 GLY C 298 GLU C 308 1 11 HELIX 9 AA9 THR C 313 VAL C 317 5 5 HELIX 10 AB1 GLU C 322 CYS C 324 5 3 HELIX 11 AB2 ASP C 334 GLY C 345 1 12 HELIX 12 AB3 LYS C 366 ALA C 369 5 4 HELIX 13 AB4 PRO C 378 ARG C 384 1 7 HELIX 14 AB5 LYS C 398 GLY C 409 1 12 HELIX 15 AB6 LEU C 437 ARG C 446 1 10 SHEET 1 AA1 5 MET A 1 ASN A 2 0 SHEET 2 AA1 5 PHE C 392 PHE C 394 -1 O PHE C 392 N ASN A 2 SHEET 3 AA1 5 LEU C 413 LYS C 418 1 O ILE C 415 N VAL C 393 SHEET 4 AA1 5 GLU C 430 THR C 436 -1 O GLU C 430 N LYS C 418 SHEET 5 AA1 5 THR C 319 PRO C 320 -1 N THR C 319 O LEU C 434 SHEET 1 AA2 5 VAL A 7 TYR A 11 0 SHEET 2 AA2 5 MET A 14 THR A 19 -1 O ILE A 18 N VAL A 7 SHEET 3 AA2 5 CYS A 96 HIS A 100 1 O VAL A 99 N LEU A 17 SHEET 4 AA2 5 VAL A 39 ARG A 44 1 N THR A 41 O ALA A 98 SHEET 5 AA2 5 HIS A 61 ASP A 64 1 O HIS A 61 N LEU A 42 SHEET 1 AA3 3 LEU C 327 ASP C 328 0 SHEET 2 AA3 3 ARG C 348 TYR C 352 1 O PRO C 350 N LEU C 327 SHEET 3 AA3 3 ILE C 359 TYR C 364 -1 O VAL C 360 N VAL C 351 SSBOND 1 CYS A 46 CYS A 101 1555 1555 2.03 SITE 1 AC1 14 THR C 319 ASP C 323 CYS C 324 PHE C 325 SITE 2 AC1 14 GLY C 345 HIS C 346 THR C 347 ARG C 348 SITE 3 AC1 14 PRO C 350 HIS C 412 LEU C 434 THR C 436 SITE 4 AC1 14 GLU C 438 ASP C 439 CRYST1 52.152 124.401 164.305 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019175 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006086 0.00000