HEADER TRANSFERASE 18-MAY-16 5K27 TITLE CRYSTAL STRUCTURE OF ANCESTRAL PROTEIN ANCMT OF ADP-DEPENDENT SUGAR TITLE 2 KINASES FAMILY. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANCMT; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.146, 2.7.1.147; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET-28A KEYWDS ANCESTRAL PROTEIN RECONSTRUCTION, ADP-DEPENDENT SUGAR KINASES FAMILY, KEYWDS 2 GLUCOKINASE, PHOSPHOFRUCTOKINASE, BIFUNCIONAL ENZYMES, ENZYME KEYWDS 3 EVOLUTION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CASTRO-FERNANDEZ,A.HERRERA-MORANDE,R.ZAMORA,F.MERINO,H.M.PEREIRA, AUTHOR 2 J.BRANDAO-NETO,R.GARRATT,V.GUIXE REVDAT 3 27-SEP-23 5K27 1 REMARK REVDAT 2 04-JUL-18 5K27 1 JRNL REVDAT 1 24-MAY-17 5K27 0 JRNL AUTH V.CASTRO-FERNANDEZ,A.HERRERA-MORANDE,R.ZAMORA,F.MERINO, JRNL AUTH 2 F.GONZALEZ-ORDENES,F.PADILLA-SALINAS,H.M.PEREIRA, JRNL AUTH 3 J.BRANDAO-NETO,R.C.GARRATT,V.GUIXE JRNL TITL RECONSTRUCTED ANCESTRAL ENZYMES REVEAL THAT NEGATIVE JRNL TITL 2 SELECTION DROVE THE EVOLUTION OF SUBSTRATE SPECIFICITY IN JRNL TITL 3 ADP-DEPENDENT KINASES. JRNL REF J. BIOL. CHEM. V. 292 21218 2017 JRNL REFN ESSN 1083-351X JRNL PMID 29273585 JRNL DOI 10.1074/JBC.AAC117.001147 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 53.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 32980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 53.4310 - 5.9044 0.96 2738 140 0.1835 0.2215 REMARK 3 2 5.9044 - 4.6874 0.99 2674 132 0.1957 0.1777 REMARK 3 3 4.6874 - 4.0951 1.00 2629 151 0.1639 0.2044 REMARK 3 4 4.0951 - 3.7208 0.98 2592 140 0.1975 0.2452 REMARK 3 5 3.7208 - 3.4542 1.00 2600 141 0.2293 0.2618 REMARK 3 6 3.4542 - 3.2505 1.00 2621 118 0.2511 0.3190 REMARK 3 7 3.2505 - 3.0878 1.00 2600 144 0.2640 0.3444 REMARK 3 8 3.0878 - 2.9534 1.00 2592 147 0.2745 0.3425 REMARK 3 9 2.9534 - 2.8397 1.00 2583 126 0.2880 0.3692 REMARK 3 10 2.8397 - 2.7417 1.00 2579 153 0.2846 0.4161 REMARK 3 11 2.7417 - 2.6560 0.98 2523 131 0.2871 0.3147 REMARK 3 12 2.6560 - 2.5800 1.00 2592 134 0.3040 0.4097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6956 REMARK 3 ANGLE : 1.009 9451 REMARK 3 CHIRALITY : 0.066 1132 REMARK 3 PLANARITY : 0.005 1185 REMARK 3 DIHEDRAL : 20.696 2507 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K27 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS OCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33041 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 53.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.85300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 1U2X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 % (W/V) PEG 3350, 0.2 M NAI PROTEIN REMARK 280 8 MG/ML, 20 MM F6P, 30 MM MGCL2, 25 MM HEPES PH 7.8, 20 MM AMP., REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.38650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 66.17700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 66.17700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.19325 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 66.17700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 66.17700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 87.57975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 66.17700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.17700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 29.19325 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 66.17700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.17700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 87.57975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.38650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 GLN B -2 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 GLU B 194 REMARK 465 ASN B 195 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 LYS A 123 CD CE NZ REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 ASN A 140 CG OD1 ND2 REMARK 470 LYS A 142 CG CD CE NZ REMARK 470 ASN A 155 CG OD1 ND2 REMARK 470 LYS A 171 CG CD CE NZ REMARK 470 LYS A 173 CG CD CE NZ REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 ASN A 195 CG OD1 ND2 REMARK 470 LEU A 196 CG CD1 CD2 REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 GLN A 266 CG CD OE1 NE2 REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 GLU A 315 CG CD OE1 OE2 REMARK 470 LYS A 347 CG CD CE NZ REMARK 470 GLU A 354 CG CD OE1 OE2 REMARK 470 LYS A 357 CG CD CE NZ REMARK 470 LYS A 358 CG CD CE NZ REMARK 470 ASP A 375 CG OD1 OD2 REMARK 470 LYS A 377 CG CD CE NZ REMARK 470 LYS A 383 CG CD CE NZ REMARK 470 LYS A 387 CG CD CE NZ REMARK 470 LYS A 392 CG CD CE NZ REMARK 470 GLU A 395 CG CD OE1 OE2 REMARK 470 GLU A 399 CG CD OE1 OE2 REMARK 470 GLU A 402 CG CD OE1 OE2 REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 LYS A 408 CG CD CE NZ REMARK 470 LYS A 410 CG CD CE NZ REMARK 470 ASP A 412 CG OD1 OD2 REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 LYS A 427 CG CD CE NZ REMARK 470 VAL A 430 CG1 CG2 REMARK 470 LYS A 449 CG CD CE NZ REMARK 470 GLU B 2 CG CD OE1 OE2 REMARK 470 ASP B 3 CG OD1 OD2 REMARK 470 LYS B 5 CG CD CE NZ REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 LYS B 24 CG CD CE NZ REMARK 470 GLU B 25 CG CD OE1 OE2 REMARK 470 GLU B 26 CD OE1 OE2 REMARK 470 ASP B 27 CG OD1 OD2 REMARK 470 ILE B 28 CD1 REMARK 470 GLN B 29 CG CD OE1 NE2 REMARK 470 LYS B 30 CE NZ REMARK 470 GLU B 33 CG CD OE1 OE2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 GLU B 38 CG CD OE1 OE2 REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 GLU B 53 CG CD OE1 OE2 REMARK 470 LYS B 66 CG CD CE NZ REMARK 470 LYS B 69 CG CD CE NZ REMARK 470 ASN B 77 CG OD1 ND2 REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 LEU B 80 CG CD1 CD2 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 LYS B 113 CG CD CE NZ REMARK 470 LEU B 120 CG CD1 CD2 REMARK 470 LYS B 123 CG CD CE NZ REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 ILE B 137 CG1 CG2 CD1 REMARK 470 VAL B 138 CG1 CG2 REMARK 470 ASN B 140 CG OD1 ND2 REMARK 470 LYS B 142 CG CD CE NZ REMARK 470 LYS B 146 CG CD CE NZ REMARK 470 LYS B 147 CG CD CE NZ REMARK 470 LYS B 153 CG CD CE NZ REMARK 470 ASP B 154 CG OD1 OD2 REMARK 470 ASP B 156 CG OD1 OD2 REMARK 470 ILE B 158 CG1 CG2 CD1 REMARK 470 LYS B 167 CG CD CE NZ REMARK 470 LYS B 171 CG CD CE NZ REMARK 470 PHE B 172 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 173 CG CD CE NZ REMARK 470 GLU B 177 CG CD OE1 OE2 REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 ILE B 180 CG1 CG2 CD1 REMARK 470 ARG B 186 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 196 CG CD1 CD2 REMARK 470 ILE B 199 CG1 CG2 CD1 REMARK 470 LYS B 202 CG CD CE NZ REMARK 470 LYS B 206 CE NZ REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 ILE B 212 CG1 CG2 CD1 REMARK 470 GLU B 214 CG CD OE1 OE2 REMARK 470 LYS B 230 CG CD CE NZ REMARK 470 LYS B 235 CG CD CE NZ REMARK 470 GLU B 238 CG CD OE1 OE2 REMARK 470 LYS B 242 CG CD CE NZ REMARK 470 ARG B 243 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 246 CG CD OE1 OE2 REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 LYS B 254 CG CD CE NZ REMARK 470 ASP B 255 CG OD1 OD2 REMARK 470 GLN B 266 CG CD OE1 NE2 REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 LYS B 272 CG CD CE NZ REMARK 470 VAL B 275 CG1 CG2 REMARK 470 VAL B 282 CG1 CG2 REMARK 470 GLU B 289 CG CD OE1 OE2 REMARK 470 GLU B 302 CG CD OE1 OE2 REMARK 470 GLU B 303 CG CD OE1 OE2 REMARK 470 GLU B 306 CG CD OE1 OE2 REMARK 470 LEU B 309 CG CD1 CD2 REMARK 470 LYS B 310 CD CE NZ REMARK 470 ILE B 314 CG1 CG2 CD1 REMARK 470 GLU B 315 CG CD OE1 OE2 REMARK 470 GLU B 319 CG CD OE1 OE2 REMARK 470 ASP B 326 CG OD1 OD2 REMARK 470 LYS B 327 CG CD CE NZ REMARK 470 ASN B 329 CG OD1 ND2 REMARK 470 LYS B 346 CD CE NZ REMARK 470 LYS B 347 CG CD CE NZ REMARK 470 ASP B 348 CG OD1 OD2 REMARK 470 LYS B 357 CG CD CE NZ REMARK 470 LYS B 377 CG CD CE NZ REMARK 470 LYS B 383 CG CD CE NZ REMARK 470 LYS B 387 CG CD CE NZ REMARK 470 ILE B 400 CG1 CG2 CD1 REMARK 470 LYS B 403 CG CD CE NZ REMARK 470 LYS B 405 CG CD CE NZ REMARK 470 LYS B 410 CG CD CE NZ REMARK 470 ASP B 412 CG OD1 OD2 REMARK 470 GLU B 424 CG CD OE1 OE2 REMARK 470 LYS B 427 CG CD CE NZ REMARK 470 THR B 429 OG1 CG2 REMARK 470 LYS B 449 CG CD CE NZ REMARK 470 LYS B 450 CG CD CE NZ REMARK 470 LYS B 451 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N PRO A 70 ND2 ASN A 185 2.05 REMARK 500 OH TYR A 22 OE1 GLU A 92 2.07 REMARK 500 N ASP A 233 O HOH A 601 2.08 REMARK 500 OD2 ASP A 326 OH TYR A 413 2.09 REMARK 500 O HOH A 629 O HOH A 633 2.10 REMARK 500 NZ LYS B 273 O HOH B 601 2.13 REMARK 500 O HOH B 601 O HOH B 605 2.13 REMARK 500 O GLU B 331 O HOH B 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 5 -18.07 -46.30 REMARK 500 ASN A 155 -1.47 79.10 REMARK 500 GLU A 194 -61.52 -138.49 REMARK 500 ASP A 233 9.22 -69.13 REMARK 500 LYS B 450 2.08 -64.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 502 DBREF 5K27 A -20 451 PDB 5K27 5K27 -20 451 DBREF 5K27 B -20 451 PDB 5K27 5K27 -20 451 SEQRES 1 A 472 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 472 GLU ASN LEU TYR PHE GLN GLY HIS MET GLU ASP ILE LYS SEQRES 3 A 472 LYS ILE SER ILE PHE LEU ALA TYR ASN VAL ASN VAL ASP SEQRES 4 A 472 ALA ILE LYS TYR LEU LYS GLU GLU ASP ILE GLN LYS LEU SEQRES 5 A 472 ILE GLU GLU PHE GLY GLU GLU GLU ILE ILE GLU LYS ILE SEQRES 6 A 472 GLU GLU TYR PRO ARG LYS ILE LYS GLU PRO LEU ASP PHE SEQRES 7 A 472 VAL ALA ARG LEU ILE HIS ALA ILE LYS THR GLY LYS PRO SEQRES 8 A 472 ALA GLU VAL PRO LEU ASP ASN GLU GLU LEU ASN LYS TRP SEQRES 9 A 472 PHE ASP SER LEU PHE LYS TYR ASP GLU GLU ARG MET GLY SEQRES 10 A 472 GLY GLN VAL GLY ILE ILE ALA ASN LEU LEU ALA ILE LEU SEQRES 11 A 472 ASP LEU LYS LYS VAL ILE ALA TYR SER PRO LEU LEU SER SEQRES 12 A 472 LYS LYS GLN ALA GLU MET PHE ASN ASN ASP LEU LEU TYR SEQRES 13 A 472 PRO ILE VAL GLU ASN GLY LYS LEU VAL LEU LYS LYS PRO SEQRES 14 A 472 ILE GLU ALA TYR LYS ASP ASN ASP PRO ILE LYS ILE ASN SEQRES 15 A 472 ARG ILE PHE GLU PHE LYS GLU GLY ILE LYS PHE LYS LEU SEQRES 16 A 472 GLY ASP GLU LYS ILE ILE ALA PRO GLN ALA ASN ARG PHE SEQRES 17 A 472 ILE VAL ALA SER ARG PRO GLU ASN LEU ALA ARG ILE GLU SEQRES 18 A 472 ILE LYS GLU ASP LEU LYS LYS TYR LEU PRO GLU ILE GLY SEQRES 19 A 472 GLU MET VAL ASP CYS ALA ILE LEU SER GLY TYR GLN GLY SEQRES 20 A 472 ILE LYS GLU LYS TYR SER ASP GLY LYS THR ALA GLU TYR SEQRES 21 A 472 TYR PHE LYS ARG ALA LYS GLU ASP ILE LYS LEU LEU LYS SEQRES 22 A 472 LYS LYS ASP ILE LYS VAL HIS LEU GLU PHE ALA SER ILE SEQRES 23 A 472 GLN ASN ILE LYS ILE ARG LYS LYS VAL VAL ASP TYR ILE SEQRES 24 A 472 LEU PRO ASN VAL ASP SER VAL GLY MET ASP GLU THR GLU SEQRES 25 A 472 ILE ALA ASN ILE LEU ASN ILE LEU GLY TYR GLU GLU LEU SEQRES 26 A 472 SER GLU LYS ILE LEU LYS ASP SER LYS ILE GLU ASP VAL SEQRES 27 A 472 ILE GLU GLY ALA LYS ILE LEU LEU ASP LYS PHE ASN LEU SEQRES 28 A 472 GLU VAL VAL GLN VAL HIS THR ILE TYR TYR ILE LEU PHE SEQRES 29 A 472 ILE SER LYS LYS ASP ASN PRO LEU SER LYS GLU GLU LEU SEQRES 30 A 472 LYS LYS THR LEU GLU PHE ALA THR ILE LEU ALA ALA THR SEQRES 31 A 472 LYS ALA LYS LEU GLY ASP ILE LYS ASN ILE GLU ASP LEU SEQRES 32 A 472 LYS VAL GLY LEU LYS VAL PRO HIS ASN LYS TYR GLY GLU SEQRES 33 A 472 LEU LEU LYS GLU ILE VAL GLU LYS LEU LYS LYS LYS LYS SEQRES 34 A 472 LYS LYS GLU ASP TYR LYS ILE VAL LEU ILE PRO SER ARG SEQRES 35 A 472 PHE VAL GLU ASN PRO LYS SER THR VAL GLY LEU GLY ASP SEQRES 36 A 472 THR ILE SER THR GLY ALA PHE VAL SER TYR VAL SER LEU SEQRES 37 A 472 LEU LYS LYS LYS SEQRES 1 B 472 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 472 GLU ASN LEU TYR PHE GLN GLY HIS MET GLU ASP ILE LYS SEQRES 3 B 472 LYS ILE SER ILE PHE LEU ALA TYR ASN VAL ASN VAL ASP SEQRES 4 B 472 ALA ILE LYS TYR LEU LYS GLU GLU ASP ILE GLN LYS LEU SEQRES 5 B 472 ILE GLU GLU PHE GLY GLU GLU GLU ILE ILE GLU LYS ILE SEQRES 6 B 472 GLU GLU TYR PRO ARG LYS ILE LYS GLU PRO LEU ASP PHE SEQRES 7 B 472 VAL ALA ARG LEU ILE HIS ALA ILE LYS THR GLY LYS PRO SEQRES 8 B 472 ALA GLU VAL PRO LEU ASP ASN GLU GLU LEU ASN LYS TRP SEQRES 9 B 472 PHE ASP SER LEU PHE LYS TYR ASP GLU GLU ARG MET GLY SEQRES 10 B 472 GLY GLN VAL GLY ILE ILE ALA ASN LEU LEU ALA ILE LEU SEQRES 11 B 472 ASP LEU LYS LYS VAL ILE ALA TYR SER PRO LEU LEU SER SEQRES 12 B 472 LYS LYS GLN ALA GLU MET PHE ASN ASN ASP LEU LEU TYR SEQRES 13 B 472 PRO ILE VAL GLU ASN GLY LYS LEU VAL LEU LYS LYS PRO SEQRES 14 B 472 ILE GLU ALA TYR LYS ASP ASN ASP PRO ILE LYS ILE ASN SEQRES 15 B 472 ARG ILE PHE GLU PHE LYS GLU GLY ILE LYS PHE LYS LEU SEQRES 16 B 472 GLY ASP GLU LYS ILE ILE ALA PRO GLN ALA ASN ARG PHE SEQRES 17 B 472 ILE VAL ALA SER ARG PRO GLU ASN LEU ALA ARG ILE GLU SEQRES 18 B 472 ILE LYS GLU ASP LEU LYS LYS TYR LEU PRO GLU ILE GLY SEQRES 19 B 472 GLU MET VAL ASP CYS ALA ILE LEU SER GLY TYR GLN GLY SEQRES 20 B 472 ILE LYS GLU LYS TYR SER ASP GLY LYS THR ALA GLU TYR SEQRES 21 B 472 TYR PHE LYS ARG ALA LYS GLU ASP ILE LYS LEU LEU LYS SEQRES 22 B 472 LYS LYS ASP ILE LYS VAL HIS LEU GLU PHE ALA SER ILE SEQRES 23 B 472 GLN ASN ILE LYS ILE ARG LYS LYS VAL VAL ASP TYR ILE SEQRES 24 B 472 LEU PRO ASN VAL ASP SER VAL GLY MET ASP GLU THR GLU SEQRES 25 B 472 ILE ALA ASN ILE LEU ASN ILE LEU GLY TYR GLU GLU LEU SEQRES 26 B 472 SER GLU LYS ILE LEU LYS ASP SER LYS ILE GLU ASP VAL SEQRES 27 B 472 ILE GLU GLY ALA LYS ILE LEU LEU ASP LYS PHE ASN LEU SEQRES 28 B 472 GLU VAL VAL GLN VAL HIS THR ILE TYR TYR ILE LEU PHE SEQRES 29 B 472 ILE SER LYS LYS ASP ASN PRO LEU SER LYS GLU GLU LEU SEQRES 30 B 472 LYS LYS THR LEU GLU PHE ALA THR ILE LEU ALA ALA THR SEQRES 31 B 472 LYS ALA LYS LEU GLY ASP ILE LYS ASN ILE GLU ASP LEU SEQRES 32 B 472 LYS VAL GLY LEU LYS VAL PRO HIS ASN LYS TYR GLY GLU SEQRES 33 B 472 LEU LEU LYS GLU ILE VAL GLU LYS LEU LYS LYS LYS LYS SEQRES 34 B 472 LYS LYS GLU ASP TYR LYS ILE VAL LEU ILE PRO SER ARG SEQRES 35 B 472 PHE VAL GLU ASN PRO LYS SER THR VAL GLY LEU GLY ASP SEQRES 36 B 472 THR ILE SER THR GLY ALA PHE VAL SER TYR VAL SER LEU SEQRES 37 B 472 LEU LYS LYS LYS HET AMP A 501 46 HET IOD A 502 1 HET IOD A 503 1 HET IOD A 504 1 HET IOD A 505 1 HET AMP B 501 23 HET IOD B 502 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM IOD IODIDE ION FORMUL 3 AMP 2(C10 H14 N5 O7 P) FORMUL 4 IOD 5(I 1-) FORMUL 10 HOH *46(H2 O) HELIX 1 AA1 ASP A 3 LYS A 6 5 4 HELIX 2 AA2 LYS A 24 GLY A 36 1 13 HELIX 3 AA3 GLY A 36 TYR A 47 1 12 HELIX 4 AA4 GLU A 53 GLY A 68 1 16 HELIX 5 AA5 ASN A 77 GLU A 79 5 3 HELIX 6 AA6 LEU A 80 PHE A 88 1 9 HELIX 7 AA7 GLY A 97 LEU A 109 1 13 HELIX 8 AA8 SER A 122 GLU A 127 1 6 HELIX 9 AA9 LYS A 147 ALA A 151 5 5 HELIX 10 AB1 LYS A 202 LYS A 207 1 6 HELIX 11 AB2 TYR A 208 MET A 215 1 8 HELIX 12 AB3 GLY A 223 ILE A 227 5 5 HELIX 13 AB4 THR A 236 LYS A 252 1 17 HELIX 14 AB5 ASN A 267 ILE A 278 1 12 HELIX 15 AB6 LEU A 279 VAL A 282 5 4 HELIX 16 AB7 ASP A 288 GLY A 300 1 13 HELIX 17 AB8 TYR A 301 SER A 312 1 12 HELIX 18 AB9 LYS A 313 PHE A 328 1 16 HELIX 19 AC1 SER A 352 GLY A 374 1 23 HELIX 20 AC2 ASN A 378 GLU A 380 5 3 HELIX 21 AC3 ASP A 381 LYS A 387 1 7 HELIX 22 AC4 ASN A 391 LYS A 408 1 18 HELIX 23 AC5 GLY A 431 LYS A 451 1 21 HELIX 24 AC6 ASP B 3 LYS B 6 5 4 HELIX 25 AC7 LYS B 24 PHE B 35 1 12 HELIX 26 AC8 GLY B 36 TYR B 47 1 12 HELIX 27 AC9 GLU B 53 GLY B 68 1 16 HELIX 28 AD1 ASN B 77 GLU B 79 5 3 HELIX 29 AD2 LEU B 80 PHE B 88 1 9 HELIX 30 AD3 GLY B 97 LEU B 109 1 13 HELIX 31 AD4 SER B 122 GLU B 127 1 6 HELIX 32 AD5 LYS B 147 ALA B 151 5 5 HELIX 33 AD6 LEU B 205 LYS B 207 5 3 HELIX 34 AD7 TYR B 208 VAL B 216 1 9 HELIX 35 AD8 GLY B 223 ILE B 227 5 5 HELIX 36 AD9 THR B 236 LYS B 252 1 17 HELIX 37 AE1 ASN B 267 ILE B 278 1 12 HELIX 38 AE2 LEU B 279 VAL B 282 5 4 HELIX 39 AE3 GLU B 289 GLY B 300 1 12 HELIX 40 AE4 TYR B 301 ASP B 311 1 11 HELIX 41 AE5 LYS B 313 PHE B 328 1 16 HELIX 42 AE6 SER B 352 GLY B 374 1 23 HELIX 43 AE7 ASN B 378 GLU B 380 5 3 HELIX 44 AE8 ASP B 381 LYS B 387 1 7 HELIX 45 AE9 ASN B 391 LYS B 408 1 18 HELIX 46 AF1 LEU B 432 LYS B 450 1 19 SHEET 1 AA1 8 LYS A 113 ALA A 116 0 SHEET 2 AA1 8 SER A 8 ALA A 12 1 N ILE A 9 O ILE A 115 SHEET 3 AA1 8 CYS A 218 LEU A 221 1 O ILE A 220 N PHE A 10 SHEET 4 AA1 8 LYS A 257 GLU A 261 1 O LYS A 257 N ALA A 219 SHEET 5 AA1 8 SER A 284 MET A 287 1 O SER A 284 N LEU A 260 SHEET 6 AA1 8 VAL A 332 HIS A 336 1 O GLN A 334 N VAL A 285 SHEET 7 AA1 8 TYR A 340 LYS A 346 -1 O LEU A 342 N VAL A 335 SHEET 8 AA1 8 TYR A 413 PRO A 419 -1 O VAL A 416 N PHE A 343 SHEET 1 AA2 5 ALA A 71 VAL A 73 0 SHEET 2 AA2 5 ASN A 185 VAL A 189 1 O ILE A 188 N ALA A 71 SHEET 3 AA2 5 ILE A 160 PHE A 166 -1 N ARG A 162 O VAL A 189 SHEET 4 AA2 5 ASN A 16 TYR A 22 1 N VAL A 17 O ASN A 161 SHEET 5 AA2 5 GLU A 92 GLY A 96 -1 O ARG A 94 N ASP A 18 SHEET 1 AA3 2 TYR A 135 VAL A 138 0 SHEET 2 AA3 2 LEU A 143 LYS A 146 -1 O VAL A 144 N ILE A 137 SHEET 1 AA4 2 LYS A 171 LEU A 174 0 SHEET 2 AA4 2 GLU A 177 ILE A 180 -1 O ILE A 179 N PHE A 172 SHEET 1 AA5 8 LYS B 113 ALA B 116 0 SHEET 2 AA5 8 SER B 8 ALA B 12 1 N ILE B 9 O ILE B 115 SHEET 3 AA5 8 CYS B 218 LEU B 221 1 O CYS B 218 N PHE B 10 SHEET 4 AA5 8 LYS B 257 GLU B 261 1 O LYS B 257 N ALA B 219 SHEET 5 AA5 8 SER B 284 ASP B 288 1 O GLY B 286 N LEU B 260 SHEET 6 AA5 8 VAL B 332 HIS B 336 1 O GLN B 334 N VAL B 285 SHEET 7 AA5 8 TYR B 340 LYS B 346 -1 O ILE B 344 N VAL B 333 SHEET 8 AA5 8 TYR B 413 PRO B 419 -1 O LYS B 414 N SER B 345 SHEET 1 AA6 5 GLU B 72 VAL B 73 0 SHEET 2 AA6 5 ASN B 185 VAL B 189 1 O ILE B 188 N VAL B 73 SHEET 3 AA6 5 ILE B 160 PHE B 166 -1 N ARG B 162 O VAL B 189 SHEET 4 AA6 5 ASN B 16 LEU B 23 1 N LEU B 23 O GLU B 165 SHEET 5 AA6 5 GLU B 92 GLY B 96 -1 O GLY B 96 N ASN B 16 SHEET 1 AA7 2 TYR B 135 GLU B 139 0 SHEET 2 AA7 2 LYS B 142 LYS B 146 -1 O VAL B 144 N ILE B 137 SHEET 1 AA8 2 LYS B 171 LEU B 174 0 SHEET 2 AA8 2 GLU B 177 ILE B 180 -1 O GLU B 177 N LEU B 174 CISPEP 1 ALA A 12 TYR A 13 0 5.99 CISPEP 2 ALA B 12 TYR B 13 0 7.96 SITE 1 AC1 10 HIS A 336 THR A 337 PHE A 422 VAL A 423 SITE 2 AC1 10 PRO A 426 LEU A 432 GLY A 433 ILE A 436 SITE 3 AC1 10 HOH A 602 HOH A 626 SITE 1 AC2 1 ILE A 376 SITE 1 AC3 10 HIS B 336 THR B 337 ILE B 338 ARG B 421 SITE 2 AC3 10 PHE B 422 VAL B 423 GLY B 431 LEU B 432 SITE 3 AC3 10 GLY B 433 ILE B 436 SITE 1 AC4 2 ASP B 375 ILE B 376 CRYST1 132.354 132.354 116.773 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007555 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008564 0.00000