HEADER TRANSPORT PROTEIN 19-MAY-16 5K2Y TITLE CRYSTAL STRUCTURE OF M. TUBERCULOSIS USPC (MONOCLINIC CRYSTAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE PERIPLASMIC SUGAR-BINDING LIPOPROTEIN USPC; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-TERMINALLY TRUNCATED USPC FROM MYCOBACTERIUM COMPND 6 TUBERCULOSIS WITH C-TERMINAL HEXA-HISTIDINE TAG FROM PET23B PLASMID SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: USPC, RV2318; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET23B KEYWDS MYCOBACTERIUM TUBERCULOSIS, ABC TRANSPORTER, SOLUTE BINDING PROTEIN, KEYWDS 2 TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.FUTTERER,E.FULLAM,G.S.BESRA REVDAT 3 08-MAY-24 5K2Y 1 REMARK REVDAT 2 06-JUL-16 5K2Y 1 JRNL REVDAT 1 01-JUN-16 5K2Y 0 JRNL AUTH E.FULLAM,I.PROKES,K.FUTTERER,G.S.BESRA JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF THE SOLUTE-BINDING JRNL TITL 2 PROTEIN USPC FROM MYCOBACTERIUM TUBERCULOSIS THAT IS JRNL TITL 3 SPECIFIC FOR AMINO SUGARS. JRNL REF OPEN BIOLOGY V. 6 2016 JRNL REFN ESSN 2046-2441 JRNL PMID 27335320 JRNL DOI 10.1098/RSOB.160105 REMARK 2 REMARK 2 RESOLUTION. 2.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 87.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 29276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1551 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.41 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.47 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2049 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 106 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5878 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 52 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.514 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.288 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.234 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.395 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6036 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8275 ; 1.744 ; 1.925 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 798 ; 6.614 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;36.694 ;23.684 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 744 ;15.507 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;21.550 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 909 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4833 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3198 ; 1.031 ; 2.127 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3994 ; 1.818 ; 3.187 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2838 ; 0.984 ; 2.111 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 39 438 B 39 438 994 0.150 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 39 A 438 REMARK 3 ORIGIN FOR THE GROUP (A): 13.3100 0.3790 13.8010 REMARK 3 T TENSOR REMARK 3 T11: 0.0779 T22: 0.0943 REMARK 3 T33: 0.1134 T12: -0.0274 REMARK 3 T13: -0.0133 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.5295 L22: 0.8127 REMARK 3 L33: 0.2463 L12: -0.4234 REMARK 3 L13: 0.1131 L23: -0.0183 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: -0.0319 S13: -0.0002 REMARK 3 S21: -0.0138 S22: 0.0176 S23: -0.0352 REMARK 3 S31: 0.0132 S32: 0.0326 S33: -0.0509 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 39 B 438 REMARK 3 ORIGIN FOR THE GROUP (A): 55.7290 13.2670 29.3990 REMARK 3 T TENSOR REMARK 3 T11: 0.0294 T22: 0.2297 REMARK 3 T33: 0.1419 T12: -0.0182 REMARK 3 T13: 0.0072 T23: -0.0551 REMARK 3 L TENSOR REMARK 3 L11: 0.2045 L22: 1.2167 REMARK 3 L33: 1.6997 L12: 0.4531 REMARK 3 L13: 0.5025 L23: 0.8928 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: 0.1160 S13: -0.0801 REMARK 3 S21: -0.1189 S22: 0.2303 S23: -0.0897 REMARK 3 S31: -0.1437 S32: 0.3015 S33: -0.1726 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 5K2Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30838 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.410 REMARK 200 RESOLUTION RANGE LOW (A) : 87.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : 0.11300 REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.66400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PRECIPITANT MIX: 25% V/V MPD; 25% PEG REMARK 280 1000; 25% W/V PEG 3350 HALOGEN MIX: 0.3M SODIUM FLUORIDE; 0.3M REMARK 280 SODIUM BROMIDE; 0.3M SODIUM IODIDE BUFFER: 1.0 M IMIDAZOLE; MES REMARK 280 MONOHYDRATE (ACID), PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.17500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 439 REMARK 465 ARG A 440 REMARK 465 LYS A 441 REMARK 465 LEU A 442 REMARK 465 ALA A 443 REMARK 465 ALA A 444 REMARK 465 ALA A 445 REMARK 465 LEU A 446 REMARK 465 GLU A 447 REMARK 465 HIS A 448 REMARK 465 HIS A 449 REMARK 465 HIS A 450 REMARK 465 HIS A 451 REMARK 465 HIS A 452 REMARK 465 HIS A 453 REMARK 465 GLN B 439 REMARK 465 ARG B 440 REMARK 465 LYS B 441 REMARK 465 LEU B 442 REMARK 465 ALA B 443 REMARK 465 ALA B 444 REMARK 465 ALA B 445 REMARK 465 LEU B 446 REMARK 465 GLU B 447 REMARK 465 HIS B 448 REMARK 465 HIS B 449 REMARK 465 HIS B 450 REMARK 465 HIS B 451 REMARK 465 HIS B 452 REMARK 465 HIS B 453 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 ARG A 71 NE CZ NH1 NH2 REMARK 470 GLU A 82 CD OE1 OE2 REMARK 470 ARG A 85 CD NE CZ NH1 NH2 REMARK 470 ASN A 169 CG OD1 ND2 REMARK 470 ARG A 194 CZ NH1 NH2 REMARK 470 ARG A 204 CZ NH1 NH2 REMARK 470 ARG A 207 NE CZ NH1 NH2 REMARK 470 LYS A 237 CE NZ REMARK 470 ASP A 270 CG OD1 OD2 REMARK 470 LYS A 333 CG CD CE NZ REMARK 470 ARG A 356 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 428 NE CZ NH1 NH2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 SER B 64 OG REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 ARG B 71 CG CD NE CZ NH1 NH2 REMARK 470 PHE B 81 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 85 CG CD NE CZ NH1 NH2 REMARK 470 SER B 92 OG REMARK 470 ASN B 101 CG OD1 ND2 REMARK 470 LYS B 115 CG CD CE NZ REMARK 470 GLN B 117 CG CD OE1 NE2 REMARK 470 THR B 118 OG1 CG2 REMARK 470 ASP B 119 CG OD1 OD2 REMARK 470 ASP B 192 CG OD1 OD2 REMARK 470 ARG B 194 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 204 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 205 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 207 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 233 CG CD OE1 NE2 REMARK 470 LYS B 237 CG CD CE NZ REMARK 470 ASP B 270 CG OD1 OD2 REMARK 470 GLN B 278 CG CD OE1 NE2 REMARK 470 VAL B 297 CG1 CG2 REMARK 470 ARG B 299 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 300 CG OD1 OD2 REMARK 470 LEU B 302 CG CD1 CD2 REMARK 470 HIS B 304 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 333 CG CD CE NZ REMARK 470 ASP B 336 CG OD1 OD2 REMARK 470 ARG B 339 NE CZ NH1 NH2 REMARK 470 VAL B 382 CG1 CG2 REMARK 470 ASN B 390 CG OD1 ND2 REMARK 470 ARG B 393 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 410 CG CD OE1 OE2 REMARK 470 GLU B 415 CD OE1 OE2 REMARK 470 ARG B 420 NE CZ NH1 NH2 REMARK 470 THR B 425 OG1 CG2 REMARK 470 ARG B 428 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 174 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 202 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG A 205 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 205 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 250 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 259 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 ARG A 317 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 44 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 PRO B 66 C - N - CA ANGL. DEV. = 14.7 DEGREES REMARK 500 PRO B 66 N - CA - C ANGL. DEV. = 16.5 DEGREES REMARK 500 ARG B 174 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 117 65.12 -107.46 REMARK 500 ALA A 146 -161.71 66.56 REMARK 500 SER A 173 147.76 -171.86 REMARK 500 ASN A 215 75.25 -66.39 REMARK 500 ILE A 220 -87.30 -118.04 REMARK 500 PRO B 66 -54.34 -26.99 REMARK 500 ASP B 67 -59.04 128.25 REMARK 500 TYR B 80 -62.34 -27.35 REMARK 500 GLN B 117 46.55 -108.24 REMARK 500 ALA B 120 -5.22 -54.36 REMARK 500 GLN B 142 -57.52 -128.08 REMARK 500 ALA B 146 -160.46 62.17 REMARK 500 ASN B 215 73.51 -65.63 REMARK 500 ILE B 220 -85.23 -115.82 REMARK 500 ALA B 239 13.72 -147.74 REMARK 500 ASP B 270 -56.57 81.54 REMARK 500 ALA B 281 3.74 -69.38 REMARK 500 TYR B 292 -14.23 -44.42 REMARK 500 ASN B 390 1.88 -59.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K2X RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF M. TUBERCULOSIS USPC (TETRAGONAL CRYSTAL FORM) DBREF 5K2Y A 39 440 UNP P71894 P71894_MYCTU 39 440 DBREF 5K2Y B 39 440 UNP P71894 P71894_MYCTU 39 440 SEQADV 5K2Y LYS A 441 UNP P71894 EXPRESSION TAG SEQADV 5K2Y LEU A 442 UNP P71894 EXPRESSION TAG SEQADV 5K2Y ALA A 443 UNP P71894 EXPRESSION TAG SEQADV 5K2Y ALA A 444 UNP P71894 EXPRESSION TAG SEQADV 5K2Y ALA A 445 UNP P71894 EXPRESSION TAG SEQADV 5K2Y LEU A 446 UNP P71894 EXPRESSION TAG SEQADV 5K2Y GLU A 447 UNP P71894 EXPRESSION TAG SEQADV 5K2Y HIS A 448 UNP P71894 EXPRESSION TAG SEQADV 5K2Y HIS A 449 UNP P71894 EXPRESSION TAG SEQADV 5K2Y HIS A 450 UNP P71894 EXPRESSION TAG SEQADV 5K2Y HIS A 451 UNP P71894 EXPRESSION TAG SEQADV 5K2Y HIS A 452 UNP P71894 EXPRESSION TAG SEQADV 5K2Y HIS A 453 UNP P71894 EXPRESSION TAG SEQADV 5K2Y LYS B 441 UNP P71894 EXPRESSION TAG SEQADV 5K2Y LEU B 442 UNP P71894 EXPRESSION TAG SEQADV 5K2Y ALA B 443 UNP P71894 EXPRESSION TAG SEQADV 5K2Y ALA B 444 UNP P71894 EXPRESSION TAG SEQADV 5K2Y ALA B 445 UNP P71894 EXPRESSION TAG SEQADV 5K2Y LEU B 446 UNP P71894 EXPRESSION TAG SEQADV 5K2Y GLU B 447 UNP P71894 EXPRESSION TAG SEQADV 5K2Y HIS B 448 UNP P71894 EXPRESSION TAG SEQADV 5K2Y HIS B 449 UNP P71894 EXPRESSION TAG SEQADV 5K2Y HIS B 450 UNP P71894 EXPRESSION TAG SEQADV 5K2Y HIS B 451 UNP P71894 EXPRESSION TAG SEQADV 5K2Y HIS B 452 UNP P71894 EXPRESSION TAG SEQADV 5K2Y HIS B 453 UNP P71894 EXPRESSION TAG SEQRES 1 A 415 ILE VAL VAL THR VAL ARG LEU TRP ASP GLU PRO ILE ALA SEQRES 2 A 415 ALA ALA TYR ARG GLN SER PHE ALA ALA PHE THR ARG SER SEQRES 3 A 415 HIS PRO ASP ILE GLU VAL ARG THR ASN LEU VAL ALA TYR SEQRES 4 A 415 SER THR TYR PHE GLU THR LEU ARG THR ASP VAL ALA GLY SEQRES 5 A 415 GLY SER ALA ASP ASP ILE PHE TRP LEU SER ASN ALA TYR SEQRES 6 A 415 PHE ALA ALA TYR ALA ASP SER GLY ARG LEU MET LYS ILE SEQRES 7 A 415 GLN THR ASP ALA ALA ASP TRP GLU PRO ALA VAL VAL ASP SEQRES 8 A 415 GLN PHE THR ARG SER GLY VAL LEU TRP GLY VAL PRO GLN SEQRES 9 A 415 LEU THR ASP ALA GLY ILE ALA VAL PHE TYR ASN ALA ASP SEQRES 10 A 415 LEU LEU ALA ALA ALA GLY VAL ASP PRO THR GLN VAL ASP SEQRES 11 A 415 ASN LEU ARG TRP SER ARG GLY ASP ASP ASP THR LEU ARG SEQRES 12 A 415 PRO MET LEU ALA ARG LEU THR VAL ASP ALA ASP GLY ARG SEQRES 13 A 415 THR ALA ASN THR PRO GLY PHE ASP ALA ARG ARG VAL ARG SEQRES 14 A 415 GLN TRP GLY TYR ASN ALA ALA ASN ASP PRO GLN ALA ILE SEQRES 15 A 415 TYR LEU ASN TYR ILE GLY SER ALA GLY GLY VAL PHE GLN SEQRES 16 A 415 ARG ASP GLY LYS PHE ALA PHE ASP ASN PRO GLY ALA ILE SEQRES 17 A 415 GLU ALA PHE ARG TYR LEU VAL GLY LEU ILE ASN ASP ASP SEQRES 18 A 415 HIS VAL ALA PRO PRO ALA SER ASP THR ASN ASP ASN GLY SEQRES 19 A 415 ASP PHE SER ARG ASN GLN PHE LEU ALA GLY LYS MET ALA SEQRES 20 A 415 LEU PHE GLN SER GLY THR TYR SER LEU ALA PRO VAL ALA SEQRES 21 A 415 ARG ASP ALA LEU PHE HIS TRP GLY VAL ALA MET LEU PRO SEQRES 22 A 415 ALA GLY PRO ALA GLY ARG VAL SER VAL THR ASN GLY ILE SEQRES 23 A 415 ALA ALA ALA GLY ASN SER ALA SER LYS HIS PRO ASP ALA SEQRES 24 A 415 VAL ARG GLN VAL LEU ALA TRP MET GLY SER THR GLU GLY SEQRES 25 A 415 ASN SER TYR LEU GLY ARG HIS GLY ALA ALA ILE PRO ALA SEQRES 26 A 415 VAL LEU SER ALA GLN PRO VAL TYR PHE ASP TYR TRP SER SEQRES 27 A 415 ALA ARG GLY VAL ASP VAL THR PRO PHE PHE ALA VAL LEU SEQRES 28 A 415 ASN GLY PRO ARG ILE ALA ALA PRO GLY GLY ALA GLY PHE SEQRES 29 A 415 ALA ALA GLY GLN GLN ALA LEU GLU PRO TYR PHE ASP GLU SEQRES 30 A 415 MET PHE LEU GLY ARG GLY ASP VAL THR THR THR LEU ARG SEQRES 31 A 415 GLN ALA GLN ALA ALA ALA ASN ALA ALA THR GLN ARG LYS SEQRES 32 A 415 LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 415 ILE VAL VAL THR VAL ARG LEU TRP ASP GLU PRO ILE ALA SEQRES 2 B 415 ALA ALA TYR ARG GLN SER PHE ALA ALA PHE THR ARG SER SEQRES 3 B 415 HIS PRO ASP ILE GLU VAL ARG THR ASN LEU VAL ALA TYR SEQRES 4 B 415 SER THR TYR PHE GLU THR LEU ARG THR ASP VAL ALA GLY SEQRES 5 B 415 GLY SER ALA ASP ASP ILE PHE TRP LEU SER ASN ALA TYR SEQRES 6 B 415 PHE ALA ALA TYR ALA ASP SER GLY ARG LEU MET LYS ILE SEQRES 7 B 415 GLN THR ASP ALA ALA ASP TRP GLU PRO ALA VAL VAL ASP SEQRES 8 B 415 GLN PHE THR ARG SER GLY VAL LEU TRP GLY VAL PRO GLN SEQRES 9 B 415 LEU THR ASP ALA GLY ILE ALA VAL PHE TYR ASN ALA ASP SEQRES 10 B 415 LEU LEU ALA ALA ALA GLY VAL ASP PRO THR GLN VAL ASP SEQRES 11 B 415 ASN LEU ARG TRP SER ARG GLY ASP ASP ASP THR LEU ARG SEQRES 12 B 415 PRO MET LEU ALA ARG LEU THR VAL ASP ALA ASP GLY ARG SEQRES 13 B 415 THR ALA ASN THR PRO GLY PHE ASP ALA ARG ARG VAL ARG SEQRES 14 B 415 GLN TRP GLY TYR ASN ALA ALA ASN ASP PRO GLN ALA ILE SEQRES 15 B 415 TYR LEU ASN TYR ILE GLY SER ALA GLY GLY VAL PHE GLN SEQRES 16 B 415 ARG ASP GLY LYS PHE ALA PHE ASP ASN PRO GLY ALA ILE SEQRES 17 B 415 GLU ALA PHE ARG TYR LEU VAL GLY LEU ILE ASN ASP ASP SEQRES 18 B 415 HIS VAL ALA PRO PRO ALA SER ASP THR ASN ASP ASN GLY SEQRES 19 B 415 ASP PHE SER ARG ASN GLN PHE LEU ALA GLY LYS MET ALA SEQRES 20 B 415 LEU PHE GLN SER GLY THR TYR SER LEU ALA PRO VAL ALA SEQRES 21 B 415 ARG ASP ALA LEU PHE HIS TRP GLY VAL ALA MET LEU PRO SEQRES 22 B 415 ALA GLY PRO ALA GLY ARG VAL SER VAL THR ASN GLY ILE SEQRES 23 B 415 ALA ALA ALA GLY ASN SER ALA SER LYS HIS PRO ASP ALA SEQRES 24 B 415 VAL ARG GLN VAL LEU ALA TRP MET GLY SER THR GLU GLY SEQRES 25 B 415 ASN SER TYR LEU GLY ARG HIS GLY ALA ALA ILE PRO ALA SEQRES 26 B 415 VAL LEU SER ALA GLN PRO VAL TYR PHE ASP TYR TRP SER SEQRES 27 B 415 ALA ARG GLY VAL ASP VAL THR PRO PHE PHE ALA VAL LEU SEQRES 28 B 415 ASN GLY PRO ARG ILE ALA ALA PRO GLY GLY ALA GLY PHE SEQRES 29 B 415 ALA ALA GLY GLN GLN ALA LEU GLU PRO TYR PHE ASP GLU SEQRES 30 B 415 MET PHE LEU GLY ARG GLY ASP VAL THR THR THR LEU ARG SEQRES 31 B 415 GLN ALA GLN ALA ALA ALA ASN ALA ALA THR GLN ARG LYS SEQRES 32 B 415 LEU ALA ALA ALA LEU GLU HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *52(H2 O) HELIX 1 AA1 ASP A 47 HIS A 65 1 19 HELIX 2 AA2 ALA A 76 SER A 78 5 3 HELIX 3 AA3 THR A 79 GLY A 90 1 12 HELIX 4 AA4 TYR A 103 SER A 110 1 8 HELIX 5 AA5 GLU A 124 PHE A 131 1 8 HELIX 6 AA6 ALA A 154 ALA A 160 1 7 HELIX 7 AA7 ASP A 163 ASP A 168 1 6 HELIX 8 AA8 THR A 179 LEU A 187 1 9 HELIX 9 AA9 ASP A 202 ARG A 204 5 3 HELIX 10 AB1 ILE A 220 ALA A 228 1 9 HELIX 11 AB2 ASN A 242 ASP A 258 1 17 HELIX 12 AB3 PRO A 264 ASN A 269 1 6 HELIX 13 AB4 ASP A 273 ALA A 281 1 9 HELIX 14 AB5 GLY A 290 TYR A 292 5 3 HELIX 15 AB6 SER A 293 ALA A 301 1 9 HELIX 16 AB7 HIS A 334 GLY A 346 1 13 HELIX 17 AB8 SER A 347 ARG A 356 1 10 HELIX 18 AB9 VAL A 364 ALA A 367 5 4 HELIX 19 AC1 GLN A 368 ARG A 378 1 11 HELIX 20 AC2 VAL A 382 VAL A 388 1 7 HELIX 21 AC3 LEU A 389 GLY A 391 5 3 HELIX 22 AC4 GLY A 401 LEU A 418 1 18 HELIX 23 AC5 ASP A 422 THR A 438 1 17 HELIX 24 AC6 ASP B 47 HIS B 65 1 19 HELIX 25 AC7 ALA B 76 GLY B 90 1 15 HELIX 26 AC8 TYR B 103 SER B 110 1 8 HELIX 27 AC9 ASP B 119 TRP B 123 5 5 HELIX 28 AD1 GLU B 124 PHE B 131 1 8 HELIX 29 AD2 ALA B 154 ALA B 160 1 7 HELIX 30 AD3 ASP B 163 LEU B 170 5 8 HELIX 31 AD4 THR B 179 LEU B 187 1 9 HELIX 32 AD5 ASP B 202 ARG B 204 5 3 HELIX 33 AD6 ILE B 220 ALA B 228 1 9 HELIX 34 AD7 ASN B 242 ASP B 258 1 17 HELIX 35 AD8 PRO B 264 THR B 268 5 5 HELIX 36 AD9 ASP B 273 ALA B 281 1 9 HELIX 37 AE1 GLY B 290 TYR B 292 5 3 HELIX 38 AE2 SER B 293 ALA B 301 1 9 HELIX 39 AE3 HIS B 334 SER B 347 1 14 HELIX 40 AE4 SER B 347 TYR B 353 1 7 HELIX 41 AE5 VAL B 364 ALA B 367 5 4 HELIX 42 AE6 GLN B 368 ARG B 378 1 11 HELIX 43 AE7 THR B 383 VAL B 388 1 6 HELIX 44 AE8 LEU B 389 GLY B 391 5 3 HELIX 45 AE9 GLY B 401 LEU B 418 1 18 HELIX 46 AF1 ASP B 422 THR B 438 1 17 SHEET 1 AA1 6 GLU A 69 LEU A 74 0 SHEET 2 AA1 6 VAL A 40 LEU A 45 1 N VAL A 43 O ARG A 71 SHEET 3 AA1 6 ILE A 96 LEU A 99 1 O ILE A 96 N ARG A 44 SHEET 4 AA1 6 GLY A 323 GLY A 328 -1 O ALA A 327 N PHE A 97 SHEET 5 AA1 6 VAL A 140 THR A 144 -1 N VAL A 140 O ALA A 326 SHEET 6 AA1 6 ILE A 361 PRO A 362 -1 O ILE A 361 N THR A 144 SHEET 1 AA2 2 THR A 132 ARG A 133 0 SHEET 2 AA2 2 VAL A 136 LEU A 137 -1 O VAL A 136 N ARG A 133 SHEET 1 AA3 3 LEU A 286 SER A 289 0 SHEET 2 AA3 3 ALA A 149 ASN A 153 -1 N PHE A 151 O PHE A 287 SHEET 3 AA3 3 TRP A 305 MET A 309 -1 O ALA A 308 N VAL A 150 SHEET 1 AA4 2 VAL A 189 ASP A 190 0 SHEET 2 AA4 2 VAL A 206 GLN A 208 -1 O ARG A 207 N VAL A 189 SHEET 1 AA5 2 GLN A 233 ARG A 234 0 SHEET 2 AA5 2 LYS A 237 PHE A 238 -1 O LYS A 237 N ARG A 234 SHEET 1 AA6 2 SER A 319 THR A 321 0 SHEET 2 AA6 2 ARG A 393 ALA A 395 1 O ILE A 394 N SER A 319 SHEET 1 AA7 6 GLU B 69 LEU B 74 0 SHEET 2 AA7 6 VAL B 40 LEU B 45 1 N VAL B 43 O ARG B 71 SHEET 3 AA7 6 ILE B 96 LEU B 99 1 O ILE B 96 N ARG B 44 SHEET 4 AA7 6 GLY B 323 GLY B 328 -1 O ALA B 327 N PHE B 97 SHEET 5 AA7 6 VAL B 140 THR B 144 -1 N GLN B 142 O ILE B 324 SHEET 6 AA7 6 ILE B 361 PRO B 362 -1 O ILE B 361 N THR B 144 SHEET 1 AA8 2 THR B 132 ARG B 133 0 SHEET 2 AA8 2 VAL B 136 LEU B 137 -1 O VAL B 136 N ARG B 133 SHEET 1 AA9 3 LEU B 286 SER B 289 0 SHEET 2 AA9 3 ALA B 149 ASN B 153 -1 N PHE B 151 O PHE B 287 SHEET 3 AA9 3 TRP B 305 ALA B 308 -1 O ALA B 308 N VAL B 150 SHEET 1 AB1 2 VAL B 189 ASP B 190 0 SHEET 2 AB1 2 VAL B 206 GLN B 208 -1 O GLN B 208 N VAL B 189 SHEET 1 AB2 2 GLN B 233 ARG B 234 0 SHEET 2 AB2 2 LYS B 237 PHE B 238 -1 O LYS B 237 N ARG B 234 SHEET 1 AB3 2 SER B 319 THR B 321 0 SHEET 2 AB3 2 ARG B 393 ALA B 395 1 O ILE B 394 N SER B 319 CISPEP 1 PRO B 66 ASP B 67 0 4.28 CRYST1 86.990 52.350 87.890 90.00 90.88 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011496 0.000000 0.000177 0.00000 SCALE2 0.000000 0.019102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011379 0.00000