HEADER HYDROLASE 19-MAY-16 5K32 TITLE PDE4D CRYSTAL STRUCTURE IN COMPLEX WITH SMALL MOLECULE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-SPECIFIC 3',5'-CYCLIC PHOSPHODIESTERASE 4D; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 88-411; COMPND 5 SYNONYM: DPDE3,PDE43; COMPND 6 EC: 3.1.4.53; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE4D, DPDE3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS PHOSPHODIESTERASES, INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR V.SEGARRA,B.HERNANDEZ,R.ROBERTS,J.GRACIA,M.SOLER,I.BONIN,J.AYMAMI REVDAT 4 10-JAN-24 5K32 1 REMARK LINK REVDAT 3 04-APR-18 5K32 1 JRNL REVDAT 2 21-MAR-18 5K32 1 JRNL REMARK REVDAT 1 29-MAR-17 5K32 0 JRNL AUTH R.S.ROBERTS,S.SEVILLA,M.FERRER,J.TALTAVULL,B.HERNANDEZ, JRNL AUTH 2 V.SEGARRA,J.GRACIA,M.D.LEHNER,A.GAVALDA,M.ANDRES,J.CABEDO, JRNL AUTH 3 D.VILELLA,P.EICHHORN,E.CALAMA,C.CARCASONA,M.MIRALPEIX JRNL TITL 4-AMINO-7,8-DIHYDRO-1,6-NAPHTHYRIDIN-5(6 H)-ONES AS INHALED JRNL TITL 2 PHOSPHODIESTERASE TYPE 4 (PDE4) INHIBITORS: STRUCTURAL JRNL TITL 3 BIOLOGY AND STRUCTURE-ACTIVITY RELATIONSHIPS. JRNL REF J. MED. CHEM. V. 61 2472 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29502405 JRNL DOI 10.1021/ACS.JMEDCHEM.7B01751 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 49055 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2627 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3560 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5207 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 184 REMARK 3 SOLVENT ATOMS : 471 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.93000 REMARK 3 B22 (A**2) : -0.06000 REMARK 3 B33 (A**2) : -1.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.218 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.129 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.932 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.860 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5485 ; 0.022 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7385 ; 1.848 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 643 ; 6.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 270 ;35.862 ;25.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 950 ;15.870 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;13.720 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 838 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4062 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2724 ; 0.219 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3687 ; 0.296 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 427 ; 0.191 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.106 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 39 ; 0.259 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.237 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3387 ; 1.190 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5248 ; 1.695 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2436 ; 2.849 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2133 ; 3.757 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5K32 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 245085 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 1.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1TB7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 19% PEG 3350, 36 % ETHYLENE GLYCOL AND REMARK 280 10 % ISOPROPANOL AS A PRECIPITANT, PH 7.5, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.98350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.92250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.86950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.92250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.98350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.86950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8300 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 87 REMARK 465 PRO A 356 REMARK 465 MET A 357 REMARK 465 SER B 295 REMARK 465 GLY B 296 REMARK 465 PRO B 356 REMARK 465 MET B 357 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 411 O REMARK 470 PRO B 411 O REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 254 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 401 O HOH A 1101 1.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL B 202 CB VAL B 202 CG1 0.138 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 319 CB - CG - CD1 ANGL. DEV. = -13.0 DEGREES REMARK 500 ASP B 201 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 225 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 261 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ASP B 334 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 161 -168.33 -125.91 REMARK 500 ASN A 216 46.42 38.66 REMARK 500 ASP A 225 -2.01 55.27 REMARK 500 LYS A 291 -85.49 -97.63 REMARK 500 VAL A 292 133.80 79.60 REMARK 500 GLU A 349 -84.52 -37.05 REMARK 500 ARG A 350 3.01 -47.07 REMARK 500 ASN A 362 27.33 -163.64 REMARK 500 ILE A 376 -55.63 -120.74 REMARK 500 HIS A 389 126.26 -37.66 REMARK 500 SER B 227 55.95 37.25 REMARK 500 ASP B 301 -82.37 125.55 REMARK 500 GLU B 349 8.88 -60.38 REMARK 500 ARG B 350 -5.08 -141.26 REMARK 500 ILE B 376 -58.23 -127.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1335 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A1336 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B1335 DISTANCE = 5.91 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 164 NE2 REMARK 620 2 HIS A 200 NE2 88.2 REMARK 620 3 ASP A 201 OD2 83.8 85.1 REMARK 620 4 ASP A 318 OD1 90.9 90.8 173.3 REMARK 620 5 HOH A1154 O 91.4 176.6 98.3 85.8 REMARK 620 6 HOH A1214 O 171.1 96.9 89.4 96.3 83.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 201 OD1 REMARK 620 2 HOH A1141 O 85.9 REMARK 620 3 HOH A1169 O 170.2 86.7 REMARK 620 4 HOH A1200 O 97.5 96.3 76.8 REMARK 620 5 HOH A1214 O 95.5 90.7 91.1 165.6 REMARK 620 6 HOH A1218 O 100.7 172.9 86.9 85.2 86.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 164 NE2 REMARK 620 2 HIS B 200 NE2 88.0 REMARK 620 3 ASP B 201 OD2 87.3 92.3 REMARK 620 4 ASP B 318 OD1 89.1 84.8 175.5 REMARK 620 5 HOH B1150 O 177.9 90.0 92.1 91.4 REMARK 620 6 HOH B1186 O 90.2 174.0 93.3 89.4 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 201 OD1 REMARK 620 2 HOH B1147 O 162.2 REMARK 620 3 HOH B1150 O 101.2 96.0 REMARK 620 4 HOH B1162 O 81.0 81.6 176.7 REMARK 620 5 HOH B1178 O 88.9 84.9 96.9 80.6 REMARK 620 6 HOH B1238 O 93.6 88.6 96.5 85.7 165.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6Q2 A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1015 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1016 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1017 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1018 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1019 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6Q2 B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1012 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1013 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1014 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1015 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1016 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1018 REMARK 800 REMARK 800 SITE_IDENTIFIER: AG1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1019 DBREF 5K32 A 88 411 UNP Q08499 PDE4D_HUMAN 88 411 DBREF 5K32 B 88 411 UNP Q08499 PDE4D_HUMAN 88 411 SEQADV 5K32 ALA A 87 UNP Q08499 EXPRESSION TAG SEQADV 5K32 ALA B 87 UNP Q08499 EXPRESSION TAG SEQRES 1 A 325 ALA GLN GLU ASP VAL LEU ALA LYS GLU LEU GLU ASP VAL SEQRES 2 A 325 ASN LYS TRP GLY LEU HIS VAL PHE ARG ILE ALA GLU LEU SEQRES 3 A 325 SER GLY ASN ARG PRO LEU THR VAL ILE MET HIS THR ILE SEQRES 4 A 325 PHE GLN GLU ARG ASP LEU LEU LYS THR PHE LYS ILE PRO SEQRES 5 A 325 VAL ASP THR LEU ILE THR TYR LEU MET THR LEU GLU ASP SEQRES 6 A 325 HIS TYR HIS ALA ASP VAL ALA TYR HIS ASN ASN ILE HIS SEQRES 7 A 325 ALA ALA ASP VAL VAL GLN SER THR HIS VAL LEU LEU SER SEQRES 8 A 325 THR PRO ALA LEU GLU ALA VAL PHE THR ASP LEU GLU ILE SEQRES 9 A 325 LEU ALA ALA ILE PHE ALA SER ALA ILE HIS ASP VAL ASP SEQRES 10 A 325 HIS PRO GLY VAL SER ASN GLN PHE LEU ILE ASN THR ASN SEQRES 11 A 325 SER GLU LEU ALA LEU MET TYR ASN ASP SER SER VAL LEU SEQRES 12 A 325 GLU ASN HIS HIS LEU ALA VAL GLY PHE LYS LEU LEU GLN SEQRES 13 A 325 GLU GLU ASN CYS ASP ILE PHE GLN ASN LEU THR LYS LYS SEQRES 14 A 325 GLN ARG GLN SER LEU ARG LYS MET VAL ILE ASP ILE VAL SEQRES 15 A 325 LEU ALA THR ASP MET SER LYS HIS MET ASN LEU LEU ALA SEQRES 16 A 325 ASP LEU LYS THR MET VAL GLU THR LYS LYS VAL THR SER SEQRES 17 A 325 SER GLY VAL LEU LEU LEU ASP ASN TYR SER ASP ARG ILE SEQRES 18 A 325 GLN VAL LEU GLN ASN MET VAL HIS CYS ALA ASP LEU SER SEQRES 19 A 325 ASN PRO THR LYS PRO LEU GLN LEU TYR ARG GLN TRP THR SEQRES 20 A 325 ASP ARG ILE MET GLU GLU PHE PHE ARG GLN GLY ASP ARG SEQRES 21 A 325 GLU ARG GLU ARG GLY MET GLU ILE SER PRO MET CYS ASP SEQRES 22 A 325 LYS HIS ASN ALA SER VAL GLU LYS SER GLN VAL GLY PHE SEQRES 23 A 325 ILE ASP TYR ILE VAL HIS PRO LEU TRP GLU THR TRP ALA SEQRES 24 A 325 ASP LEU VAL HIS PRO ASP ALA GLN ASP ILE LEU ASP THR SEQRES 25 A 325 LEU GLU ASP ASN ARG GLU TRP TYR GLN SER THR ILE PRO SEQRES 1 B 325 ALA GLN GLU ASP VAL LEU ALA LYS GLU LEU GLU ASP VAL SEQRES 2 B 325 ASN LYS TRP GLY LEU HIS VAL PHE ARG ILE ALA GLU LEU SEQRES 3 B 325 SER GLY ASN ARG PRO LEU THR VAL ILE MET HIS THR ILE SEQRES 4 B 325 PHE GLN GLU ARG ASP LEU LEU LYS THR PHE LYS ILE PRO SEQRES 5 B 325 VAL ASP THR LEU ILE THR TYR LEU MET THR LEU GLU ASP SEQRES 6 B 325 HIS TYR HIS ALA ASP VAL ALA TYR HIS ASN ASN ILE HIS SEQRES 7 B 325 ALA ALA ASP VAL VAL GLN SER THR HIS VAL LEU LEU SER SEQRES 8 B 325 THR PRO ALA LEU GLU ALA VAL PHE THR ASP LEU GLU ILE SEQRES 9 B 325 LEU ALA ALA ILE PHE ALA SER ALA ILE HIS ASP VAL ASP SEQRES 10 B 325 HIS PRO GLY VAL SER ASN GLN PHE LEU ILE ASN THR ASN SEQRES 11 B 325 SER GLU LEU ALA LEU MET TYR ASN ASP SER SER VAL LEU SEQRES 12 B 325 GLU ASN HIS HIS LEU ALA VAL GLY PHE LYS LEU LEU GLN SEQRES 13 B 325 GLU GLU ASN CYS ASP ILE PHE GLN ASN LEU THR LYS LYS SEQRES 14 B 325 GLN ARG GLN SER LEU ARG LYS MET VAL ILE ASP ILE VAL SEQRES 15 B 325 LEU ALA THR ASP MET SER LYS HIS MET ASN LEU LEU ALA SEQRES 16 B 325 ASP LEU LYS THR MET VAL GLU THR LYS LYS VAL THR SER SEQRES 17 B 325 SER GLY VAL LEU LEU LEU ASP ASN TYR SER ASP ARG ILE SEQRES 18 B 325 GLN VAL LEU GLN ASN MET VAL HIS CYS ALA ASP LEU SER SEQRES 19 B 325 ASN PRO THR LYS PRO LEU GLN LEU TYR ARG GLN TRP THR SEQRES 20 B 325 ASP ARG ILE MET GLU GLU PHE PHE ARG GLN GLY ASP ARG SEQRES 21 B 325 GLU ARG GLU ARG GLY MET GLU ILE SER PRO MET CYS ASP SEQRES 22 B 325 LYS HIS ASN ALA SER VAL GLU LYS SER GLN VAL GLY PHE SEQRES 23 B 325 ILE ASP TYR ILE VAL HIS PRO LEU TRP GLU THR TRP ALA SEQRES 24 B 325 ASP LEU VAL HIS PRO ASP ALA GLN ASP ILE LEU ASP THR SEQRES 25 B 325 LEU GLU ASP ASN ARG GLU TRP TYR GLN SER THR ILE PRO HET ZN A1001 1 HET MG A1002 1 HET 6Q2 A1003 26 HET EDO A1004 4 HET EDO A1005 4 HET EDO A1006 4 HET EDO A1007 4 HET EDO A1008 4 HET EDO A1009 4 HET EDO A1010 4 HET EDO A1011 4 HET EDO A1012 4 HET EDO A1013 4 HET EDO A1014 4 HET EDO A1015 4 HET EDO A1016 4 HET EDO A1017 4 HET EDO A1018 4 HET EDO A1019 4 HET ZN B1001 1 HET MG B1002 1 HET 6Q2 B1003 26 HET EDO B1004 4 HET EDO B1005 4 HET EDO B1006 4 HET EDO B1007 4 HET EDO B1008 4 HET EDO B1009 4 HET EDO B1010 4 HET EDO B1011 4 HET EDO B1012 4 HET EDO B1013 4 HET EDO B1014 4 HET EDO B1015 4 HET EDO B1016 4 HET EDO B1017 4 HET EDO B1018 4 HET EDO B1019 4 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM 6Q2 4-[(3-METHOXYPHENYL)AMINO]-2-PHENYL-7,8-DIHYDRO-1,6- HETNAM 2 6Q2 NAPHTHYRIDIN-5(6H)-ONE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 6Q2 2(C21 H19 N3 O2) FORMUL 6 EDO 32(C2 H6 O2) FORMUL 41 HOH *471(H2 O) HELIX 1 AA1 GLN A 88 GLU A 97 1 10 HELIX 2 AA2 HIS A 105 SER A 113 1 9 HELIX 3 AA3 ARG A 116 ARG A 129 1 14 HELIX 4 AA4 ASP A 130 PHE A 135 1 6 HELIX 5 AA5 PRO A 138 HIS A 152 1 15 HELIX 6 AA6 ASN A 161 LEU A 176 1 16 HELIX 7 AA7 SER A 177 GLU A 182 5 6 HELIX 8 AA8 THR A 186 HIS A 200 1 15 HELIX 9 AA9 SER A 208 THR A 215 1 8 HELIX 10 AB1 SER A 217 ASN A 224 1 8 HELIX 11 AB2 SER A 227 LEU A 240 1 14 HELIX 12 AB3 LEU A 241 GLU A 243 5 3 HELIX 13 AB4 THR A 253 ALA A 270 1 18 HELIX 14 AB5 THR A 271 SER A 274 5 4 HELIX 15 AB6 LYS A 275 THR A 289 1 15 HELIX 16 AB7 ASN A 302 LEU A 319 1 18 HELIX 17 AB8 SER A 320 LYS A 324 5 5 HELIX 18 AB9 PRO A 325 ARG A 350 1 26 HELIX 19 AC1 ASP A 359 ALA A 363 5 5 HELIX 20 AC2 SER A 364 ILE A 376 1 13 HELIX 21 AC3 ILE A 376 HIS A 389 1 14 HELIX 22 AC4 ALA A 392 THR A 409 1 18 HELIX 23 AC5 GLN B 88 GLU B 97 1 10 HELIX 24 AC6 HIS B 105 SER B 113 1 9 HELIX 25 AC7 ARG B 116 ASP B 130 1 15 HELIX 26 AC8 ASP B 130 LYS B 136 1 7 HELIX 27 AC9 PRO B 138 HIS B 152 1 15 HELIX 28 AD1 ASN B 161 SER B 177 1 17 HELIX 29 AD2 THR B 178 GLU B 182 5 5 HELIX 30 AD3 THR B 186 HIS B 200 1 15 HELIX 31 AD4 SER B 208 THR B 215 1 8 HELIX 32 AD5 SER B 217 TYR B 223 1 7 HELIX 33 AD6 SER B 227 LEU B 240 1 14 HELIX 34 AD7 LEU B 241 GLU B 243 5 3 HELIX 35 AD8 THR B 253 ALA B 270 1 18 HELIX 36 AD9 THR B 271 SER B 274 5 4 HELIX 37 AE1 LYS B 275 THR B 289 1 15 HELIX 38 AE2 ASN B 302 LEU B 319 1 18 HELIX 39 AE3 SER B 320 LYS B 324 5 5 HELIX 40 AE4 PRO B 325 GLU B 349 1 25 HELIX 41 AE5 SER B 364 ILE B 376 1 13 HELIX 42 AE6 ILE B 376 VAL B 388 1 13 HELIX 43 AE7 ALA B 392 THR B 409 1 18 LINK NE2 HIS A 164 ZN ZN A1001 1555 1555 2.22 LINK NE2 HIS A 200 ZN ZN A1001 1555 1555 2.31 LINK OD2 ASP A 201 ZN ZN A1001 1555 1555 2.05 LINK OD1 ASP A 201 MG MG A1002 1555 1555 2.10 LINK OD1 ASP A 318 ZN ZN A1001 1555 1555 2.39 LINK ZN ZN A1001 O HOH A1154 1555 1555 2.22 LINK ZN ZN A1001 O HOH A1214 1555 1555 2.23 LINK MG MG A1002 O HOH A1141 1555 1555 2.13 LINK MG MG A1002 O HOH A1169 1555 1555 2.27 LINK MG MG A1002 O HOH A1200 1555 1555 2.41 LINK MG MG A1002 O HOH A1214 1555 1555 1.88 LINK MG MG A1002 O HOH A1218 1555 1555 2.13 LINK NE2 HIS B 164 ZN ZN B1001 1555 1555 2.28 LINK NE2 HIS B 200 ZN ZN B1001 1555 1555 2.32 LINK OD2 ASP B 201 ZN ZN B1001 1555 1555 2.26 LINK OD1 ASP B 201 MG MG B1002 1555 1555 2.03 LINK OD1 ASP B 318 ZN ZN B1001 1555 1555 2.11 LINK ZN ZN B1001 O HOH B1150 1555 1555 2.07 LINK ZN ZN B1001 O HOH B1186 1555 1555 2.16 LINK MG MG B1002 O HOH B1147 1555 1555 2.31 LINK MG MG B1002 O HOH B1150 1555 1555 2.04 LINK MG MG B1002 O HOH B1162 1555 1555 2.07 LINK MG MG B1002 O HOH B1178 1555 1555 2.21 LINK MG MG B1002 O HOH B1238 1555 1555 2.12 CISPEP 1 HIS A 389 PRO A 390 0 1.14 CISPEP 2 LEU B 300 ASP B 301 0 -1.39 CISPEP 3 HIS B 389 PRO B 390 0 7.45 SITE 1 AC1 7 HIS A 164 HIS A 200 ASP A 201 ASP A 318 SITE 2 AC1 7 MG A1002 HOH A1154 HOH A1214 SITE 1 AC2 7 ASP A 201 ZN A1001 HOH A1141 HOH A1169 SITE 2 AC2 7 HOH A1200 HOH A1214 HOH A1218 SITE 1 AC3 13 TYR A 159 THR A 271 MET A 273 ASP A 318 SITE 2 AC3 13 ASN A 321 THR A 333 GLN A 369 PHE A 372 SITE 3 AC3 13 EDO A1010 EDO A1011 EDO A1013 HOH A1122 SITE 4 AC3 13 HOH A1186 SITE 1 AC4 5 LYS A 262 ILE A 265 ASP A 266 HOH A1108 SITE 2 AC4 5 ASN B 224 SITE 1 AC5 6 ASN A 209 GLN A 210 HOH A1107 HOH A1133 SITE 2 AC5 6 HOH A1162 HOH A1182 SITE 1 AC6 8 GLU A 150 TYR A 153 ASN A 162 EDO A1007 SITE 2 AC6 8 HOH A1125 HOH A1151 HOH A1314 GLN B 407 SITE 1 AC7 7 ASN A 115 ALA A 155 ASN A 161 ASN A 162 SITE 2 AC7 7 ILE A 163 EDO A1006 HOH A1151 SITE 1 AC8 5 VAL A 174 SER A 177 THR A 178 ASP A 391 SITE 2 AC8 5 HOH A1112 SITE 1 AC9 3 PHE A 238 ARG A 257 HOH A1193 SITE 1 AD1 10 HIS A 204 GLY A 206 VAL A 207 SER A 208 SITE 2 AD1 10 GLU A 339 PHE A 340 GLN A 343 6Q2 A1003 SITE 3 AD1 10 HOH A1126 HOH A1252 SITE 1 AD2 4 SER A 368 GLY A 371 PHE A 372 6Q2 A1003 SITE 1 AD3 4 HIS A 154 ASP A 203 PRO A 205 LEU A 219 SITE 1 AD4 2 MET A 273 6Q2 A1003 SITE 1 AD5 6 ALA A 183 VAL A 184 HOH A1103 GLY B 114 SITE 2 AD5 6 ASN B 115 ARG B 116 SITE 1 AD6 7 PRO A 179 ALA A 180 SER A 295 GLY A 296 SITE 2 AD6 7 HIS A 389 PRO A 390 ASP A 391 SITE 1 AD7 5 LEU A 299 ARG B 335 ARG B 342 HOH B1113 SITE 2 AD7 5 HOH B1221 SITE 1 AD8 4 GLU A 366 TRP A 405 TYR A 406 THR A 409 SITE 1 AD9 3 GLU A 111 ARG A 335 HOH A1240 SITE 1 AE1 2 LYS A 275 HOH A1188 SITE 1 AE2 7 HIS B 164 HIS B 200 ASP B 201 ASP B 318 SITE 2 AE2 7 MG B1002 HOH B1150 HOH B1186 SITE 1 AE3 7 ASP B 201 ZN B1001 HOH B1147 HOH B1150 SITE 2 AE3 7 HOH B1162 HOH B1178 HOH B1238 SITE 1 AE4 13 TYR B 159 MET B 273 ASP B 318 ASN B 321 SITE 2 AE4 13 TRP B 332 THR B 333 ILE B 336 PHE B 340 SITE 3 AE4 13 GLN B 369 PHE B 372 EDO B1012 EDO B1013 SITE 4 AE4 13 HOH B1128 SITE 1 AE5 5 PRO A 411 GLU B 366 TRP B 405 TYR B 406 SITE 2 AE5 5 HOH B1127 SITE 1 AE6 6 PHE B 238 ARG B 257 ARG B 261 EDO B1006 SITE 2 AE6 6 HOH B1119 HOH B1196 SITE 1 AE7 4 ARG B 257 GLN B 258 EDO B1005 HOH B1212 SITE 1 AE8 4 LYS B 262 ASP B 266 HOH B1102 HOH B1203 SITE 1 AE9 3 TRP A 405 ASP B 401 ASN B 402 SITE 1 AF1 2 MET B 277 LYS B 284 SITE 1 AF2 6 ASP A 151 HIS A 152 GLY B 371 ASP B 374 SITE 2 AF2 6 TYR B 375 HOH B1138 SITE 1 AF3 9 HIS B 160 HIS B 204 GLY B 206 VAL B 207 SITE 2 AF3 9 GLU B 339 PHE B 340 GLN B 343 HOH B1124 SITE 3 AF3 9 HOH B1143 SITE 1 AF4 4 SER B 368 GLY B 371 PHE B 372 6Q2 B1003 SITE 1 AF5 2 MET B 273 6Q2 B1003 SITE 1 AF6 1 LYS B 239 SITE 1 AF7 4 HIS B 154 ASP B 203 PRO B 205 LEU B 219 SITE 1 AF8 4 THR B 293 SER B 294 VAL B 297 HOH B1303 SITE 1 AF9 3 VAL A 297 LEU A 299 HOH B1142 SITE 1 AG1 4 ALA B 183 PHE B 185 ILE B 190 HOH B1116 CRYST1 59.967 79.739 163.845 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016676 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012541 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006103 0.00000