HEADER HYDROLASE 19-MAY-16 5K3E TITLE CRYSTAL STRUCTURE OF THE FLUOROACETATE DEHALOGENASE RPA1163 - TITLE 2 ASP110ASN/GLYCOLATE - COCRYSTALLIZED COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLUOROACETATE DEHALOGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.8.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS (STRAIN ATCC BAA-98 SOURCE 3 / CGA009); SOURCE 4 ORGANISM_TAXID: 258594; SOURCE 5 STRAIN: ATCC BAA-98 / CGA009; SOURCE 6 GENE: RPA1163; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HOMODIMER, HYDROLASE, DEHALOGENASE EXPDTA X-RAY DIFFRACTION AUTHOR P.MEHRABI,T.H.KIM,S.R.PROSSER,E.F.PAI REVDAT 3 15-NOV-23 5K3E 1 ATOM REVDAT 2 27-SEP-23 5K3E 1 REMARK REVDAT 1 01-FEB-17 5K3E 0 JRNL AUTH T.H.KIM,P.MEHRABI,Z.REN,A.SLJOKA,C.ING,A.BEZGINOV,L.YE, JRNL AUTH 2 R.POMES,R.S.PROSSER,E.F.PAI JRNL TITL THE ROLE OF DIMER ASYMMETRY AND PROTOMER DYNAMICS IN ENZYME JRNL TITL 2 CATALYSIS. JRNL REF SCIENCE V. 355 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 28104837 JRNL DOI 10.1126/SCIENCE.AAG2355 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 78608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3942 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7774 - 4.6567 0.98 2715 139 0.1533 0.1560 REMARK 3 2 4.6567 - 3.7041 1.00 2735 138 0.1275 0.1404 REMARK 3 3 3.7041 - 3.2382 1.00 2724 140 0.1512 0.1818 REMARK 3 4 3.2382 - 2.9432 1.00 2703 156 0.1609 0.2094 REMARK 3 5 2.9432 - 2.7328 1.00 2706 149 0.1780 0.2148 REMARK 3 6 2.7328 - 2.5721 1.00 2705 142 0.1678 0.2051 REMARK 3 7 2.5721 - 2.4435 1.00 2664 170 0.1627 0.2034 REMARK 3 8 2.4435 - 2.3373 1.00 2678 159 0.1633 0.2015 REMARK 3 9 2.3373 - 2.2474 1.00 2699 155 0.1683 0.2077 REMARK 3 10 2.2474 - 2.1700 1.00 2710 135 0.1618 0.2178 REMARK 3 11 2.1700 - 2.1022 1.00 2673 149 0.1635 0.1937 REMARK 3 12 2.1022 - 2.0422 1.00 2727 142 0.1682 0.2233 REMARK 3 13 2.0422 - 1.9885 1.00 2650 144 0.1648 0.1908 REMARK 3 14 1.9885 - 1.9400 1.00 2739 131 0.1681 0.2302 REMARK 3 15 1.9400 - 1.8959 1.00 2683 132 0.1632 0.2127 REMARK 3 16 1.8959 - 1.8556 1.00 2701 139 0.1622 0.2301 REMARK 3 17 1.8556 - 1.8185 1.00 2681 134 0.1608 0.2024 REMARK 3 18 1.8185 - 1.7842 1.00 2718 148 0.1701 0.2414 REMARK 3 19 1.7842 - 1.7524 1.00 2683 128 0.1709 0.2012 REMARK 3 20 1.7524 - 1.7227 1.00 2727 129 0.1803 0.2520 REMARK 3 21 1.7227 - 1.6949 1.00 2703 130 0.1725 0.2414 REMARK 3 22 1.6949 - 1.6689 1.00 2645 143 0.1827 0.2276 REMARK 3 23 1.6689 - 1.6443 1.00 2704 144 0.1803 0.2092 REMARK 3 24 1.6443 - 1.6212 1.00 2655 138 0.1837 0.2199 REMARK 3 25 1.6212 - 1.5993 1.00 2713 146 0.1858 0.2562 REMARK 3 26 1.5993 - 1.5785 1.00 2686 150 0.2026 0.2531 REMARK 3 27 1.5785 - 1.5588 0.90 2407 122 0.2881 0.3009 REMARK 3 28 1.5588 - 1.5400 0.79 2132 110 0.4487 0.4436 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 4856 REMARK 3 ANGLE : 1.791 6620 REMARK 3 CHIRALITY : 0.084 678 REMARK 3 PLANARITY : 0.011 871 REMARK 3 DIHEDRAL : 13.743 1743 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-D REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78608 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 19.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.02400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.17000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3R3U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350 19-22%, 200MM CALCIUM REMARK 280 CHLORIDE, 100MM TRIS HCL PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.49500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASP A 3 REMARK 465 ALA A 257 REMARK 465 ALA A 258 REMARK 465 ALA A 301 REMARK 465 PRO A 302 REMARK 465 GLY A 303 REMARK 465 SER A 304 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 ASP B 3 REMARK 465 SER B 256 REMARK 465 ALA B 257 REMARK 465 ALA B 258 REMARK 465 ALA B 301 REMARK 465 PRO B 302 REMARK 465 GLY B 303 REMARK 465 SER B 304 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 ARG A 296 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 253 CG1 CG2 CD1 REMARK 470 GLN B 289 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 544 O HOH A 772 1.98 REMARK 500 CL CL B 401 O HOH B 654 2.13 REMARK 500 O SER A 251 O HOH A 501 2.13 REMARK 500 O HOH B 532 O HOH B 763 2.14 REMARK 500 O HOH B 510 O HOH B 748 2.15 REMARK 500 O HOH B 649 O HOH B 698 2.16 REMARK 500 O HOH B 675 O HOH B 759 2.16 REMARK 500 O HOH A 503 O HOH A 692 2.19 REMARK 500 O GLY A 172 O HOH A 502 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 563 O HOH B 759 1556 2.05 REMARK 500 O HOH A 816 O HOH A 827 2557 2.16 REMARK 500 O HOH A 822 O HOH B 638 1656 2.18 REMARK 500 O HOH A 588 O HOH B 759 1556 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 46 CA - CB - CG ANGL. DEV. = -19.1 DEGREES REMARK 500 ARG A 114 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 LEU A 247 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 MET B 46 CA - CB - CG ANGL. DEV. = -16.5 DEGREES REMARK 500 ARG B 86 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 41 61.30 -101.75 REMARK 500 ASN A 110 -130.55 56.66 REMARK 500 SER A 123 58.58 -142.55 REMARK 500 ASP A 173 65.12 -154.12 REMARK 500 TYR A 224 -96.42 -121.73 REMARK 500 ASN B 110 -133.45 55.96 REMARK 500 ILE B 153 53.25 -116.49 REMARK 500 ASP B 173 71.20 -153.40 REMARK 500 TYR B 224 -92.87 -123.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K3A RELATED DB: PDB REMARK 900 RELATED ID: 5K3B RELATED DB: PDB REMARK 900 RELATED ID: 5K3C RELATED DB: PDB REMARK 900 RELATED ID: 5K3D RELATED DB: PDB REMARK 900 RELATED ID: 5K3F RELATED DB: PDB DBREF 5K3E A 1 302 UNP Q6NAM1 DEHA_RHOPA 1 302 DBREF 5K3E B 1 302 UNP Q6NAM1 DEHA_RHOPA 1 302 SEQADV 5K3E GLY A -1 UNP Q6NAM1 EXPRESSION TAG SEQADV 5K3E HIS A 0 UNP Q6NAM1 EXPRESSION TAG SEQADV 5K3E ASN A 110 UNP Q6NAM1 ASP 110 ENGINEERED MUTATION SEQADV 5K3E GLY A 303 UNP Q6NAM1 EXPRESSION TAG SEQADV 5K3E SER A 304 UNP Q6NAM1 EXPRESSION TAG SEQADV 5K3E GLY B -1 UNP Q6NAM1 EXPRESSION TAG SEQADV 5K3E HIS B 0 UNP Q6NAM1 EXPRESSION TAG SEQADV 5K3E ASN B 110 UNP Q6NAM1 ASP 110 ENGINEERED MUTATION SEQADV 5K3E GLY B 303 UNP Q6NAM1 EXPRESSION TAG SEQADV 5K3E SER B 304 UNP Q6NAM1 EXPRESSION TAG SEQRES 1 A 306 GLY HIS MET PRO ASP LEU ALA ASP LEU PHE PRO GLY PHE SEQRES 2 A 306 GLY SER GLU TRP ILE ASN THR SER SER GLY ARG ILE PHE SEQRES 3 A 306 ALA ARG VAL GLY GLY ASP GLY PRO PRO LEU LEU LEU LEU SEQRES 4 A 306 HIS GLY PHE PRO GLN THR HIS VAL MET TRP HIS ARG VAL SEQRES 5 A 306 ALA PRO LYS LEU ALA GLU ARG PHE LYS VAL ILE VAL ALA SEQRES 6 A 306 ASP LEU PRO GLY TYR GLY TRP SER ASP MET PRO GLU SER SEQRES 7 A 306 ASP GLU GLN HIS THR PRO TYR THR LYS ARG ALA MET ALA SEQRES 8 A 306 LYS GLN LEU ILE GLU ALA MET GLU GLN LEU GLY HIS VAL SEQRES 9 A 306 HIS PHE ALA LEU ALA GLY HIS ASN ARG GLY ALA ARG VAL SEQRES 10 A 306 SER TYR ARG LEU ALA LEU ASP SER PRO GLY ARG LEU SER SEQRES 11 A 306 LYS LEU ALA VAL LEU ASP ILE LEU PRO THR TYR GLU TYR SEQRES 12 A 306 TRP GLN ARG MET ASN ARG ALA TYR ALA LEU LYS ILE TYR SEQRES 13 A 306 HIS TRP SER PHE LEU ALA GLN PRO ALA PRO LEU PRO GLU SEQRES 14 A 306 ASN LEU LEU GLY GLY ASP PRO ASP PHE TYR VAL LYS ALA SEQRES 15 A 306 LYS LEU ALA SER TRP THR ARG ALA GLY ASP LEU SER ALA SEQRES 16 A 306 PHE ASP PRO ARG ALA VAL GLU HIS TYR ARG ILE ALA PHE SEQRES 17 A 306 ALA ASP PRO MET ARG ARG HIS VAL MET CYS GLU ASP TYR SEQRES 18 A 306 ARG ALA GLY ALA TYR ALA ASP PHE GLU HIS ASP LYS ILE SEQRES 19 A 306 ASP VAL GLU ALA GLY ASN LYS ILE PRO VAL PRO MET LEU SEQRES 20 A 306 ALA LEU TRP GLY ALA SER GLY ILE ALA GLN SER ALA ALA SEQRES 21 A 306 THR PRO LEU ASP VAL TRP ARG LYS TRP ALA SER ASP VAL SEQRES 22 A 306 GLN GLY ALA PRO ILE GLU SER GLY HIS PHE LEU PRO GLU SEQRES 23 A 306 GLU ALA PRO ASP GLN THR ALA GLU ALA LEU VAL ARG PHE SEQRES 24 A 306 PHE SER ALA ALA PRO GLY SER SEQRES 1 B 306 GLY HIS MET PRO ASP LEU ALA ASP LEU PHE PRO GLY PHE SEQRES 2 B 306 GLY SER GLU TRP ILE ASN THR SER SER GLY ARG ILE PHE SEQRES 3 B 306 ALA ARG VAL GLY GLY ASP GLY PRO PRO LEU LEU LEU LEU SEQRES 4 B 306 HIS GLY PHE PRO GLN THR HIS VAL MET TRP HIS ARG VAL SEQRES 5 B 306 ALA PRO LYS LEU ALA GLU ARG PHE LYS VAL ILE VAL ALA SEQRES 6 B 306 ASP LEU PRO GLY TYR GLY TRP SER ASP MET PRO GLU SER SEQRES 7 B 306 ASP GLU GLN HIS THR PRO TYR THR LYS ARG ALA MET ALA SEQRES 8 B 306 LYS GLN LEU ILE GLU ALA MET GLU GLN LEU GLY HIS VAL SEQRES 9 B 306 HIS PHE ALA LEU ALA GLY HIS ASN ARG GLY ALA ARG VAL SEQRES 10 B 306 SER TYR ARG LEU ALA LEU ASP SER PRO GLY ARG LEU SER SEQRES 11 B 306 LYS LEU ALA VAL LEU ASP ILE LEU PRO THR TYR GLU TYR SEQRES 12 B 306 TRP GLN ARG MET ASN ARG ALA TYR ALA LEU LYS ILE TYR SEQRES 13 B 306 HIS TRP SER PHE LEU ALA GLN PRO ALA PRO LEU PRO GLU SEQRES 14 B 306 ASN LEU LEU GLY GLY ASP PRO ASP PHE TYR VAL LYS ALA SEQRES 15 B 306 LYS LEU ALA SER TRP THR ARG ALA GLY ASP LEU SER ALA SEQRES 16 B 306 PHE ASP PRO ARG ALA VAL GLU HIS TYR ARG ILE ALA PHE SEQRES 17 B 306 ALA ASP PRO MET ARG ARG HIS VAL MET CYS GLU ASP TYR SEQRES 18 B 306 ARG ALA GLY ALA TYR ALA ASP PHE GLU HIS ASP LYS ILE SEQRES 19 B 306 ASP VAL GLU ALA GLY ASN LYS ILE PRO VAL PRO MET LEU SEQRES 20 B 306 ALA LEU TRP GLY ALA SER GLY ILE ALA GLN SER ALA ALA SEQRES 21 B 306 THR PRO LEU ASP VAL TRP ARG LYS TRP ALA SER ASP VAL SEQRES 22 B 306 GLN GLY ALA PRO ILE GLU SER GLY HIS PHE LEU PRO GLU SEQRES 23 B 306 GLU ALA PRO ASP GLN THR ALA GLU ALA LEU VAL ARG PHE SEQRES 24 B 306 PHE SER ALA ALA PRO GLY SER HET GOA A 401 5 HET CL A 402 1 HET CL B 401 1 HETNAM GOA GLYCOLIC ACID HETNAM CL CHLORIDE ION HETSYN GOA HYDROXYACETIC ACID; HYDROXYETHANOIC ACID FORMUL 3 GOA C2 H4 O3 FORMUL 4 CL 2(CL 1-) FORMUL 6 HOH *648(H2 O) HELIX 1 AA1 THR A 43 HIS A 48 5 6 HELIX 2 AA2 VAL A 50 ALA A 55 1 6 HELIX 3 AA3 HIS A 80 TYR A 83 5 4 HELIX 4 AA4 THR A 84 LEU A 99 1 16 HELIX 5 AA5 ASN A 110 SER A 123 1 14 HELIX 6 AA6 PRO A 137 ARG A 144 1 8 HELIX 7 AA7 ASN A 146 ILE A 153 1 8 HELIX 8 AA8 TYR A 154 ALA A 160 1 7 HELIX 9 AA9 PRO A 164 GLY A 171 1 8 HELIX 10 AB1 ASP A 173 TRP A 185 1 13 HELIX 11 AB2 ASP A 195 ALA A 207 1 13 HELIX 12 AB3 ASP A 208 TYR A 224 1 17 HELIX 13 AB4 TYR A 224 GLY A 237 1 14 HELIX 14 AB5 PRO A 260 ALA A 268 1 9 HELIX 15 AB6 PHE A 281 ALA A 286 1 6 HELIX 16 AB7 ALA A 286 ALA A 300 1 15 HELIX 17 AB8 THR B 43 HIS B 48 5 6 HELIX 18 AB9 VAL B 50 ALA B 55 1 6 HELIX 19 AC1 HIS B 80 TYR B 83 5 4 HELIX 20 AC2 THR B 84 LEU B 99 1 16 HELIX 21 AC3 ASN B 110 SER B 123 1 14 HELIX 22 AC4 PRO B 137 ARG B 144 1 8 HELIX 23 AC5 ASN B 146 ILE B 153 1 8 HELIX 24 AC6 TYR B 154 LEU B 159 1 6 HELIX 25 AC7 PRO B 164 GLY B 171 1 8 HELIX 26 AC8 ASP B 173 TRP B 185 1 13 HELIX 27 AC9 ASP B 195 ALA B 207 1 13 HELIX 28 AD1 ASP B 208 TYR B 224 1 17 HELIX 29 AD2 TYR B 224 GLY B 237 1 14 HELIX 30 AD3 PRO B 260 LYS B 266 1 7 HELIX 31 AD4 PHE B 281 ALA B 286 1 6 HELIX 32 AD5 ALA B 286 SER B 299 1 14 SHEET 1 AA1 8 GLY A 12 ILE A 16 0 SHEET 2 AA1 8 ILE A 23 GLY A 29 -1 O ILE A 23 N ILE A 16 SHEET 3 AA1 8 LYS A 59 ALA A 63 -1 O VAL A 62 N ARG A 26 SHEET 4 AA1 8 PRO A 33 LEU A 37 1 N LEU A 34 O ILE A 61 SHEET 5 AA1 8 PHE A 104 HIS A 109 1 O ALA A 105 N LEU A 35 SHEET 6 AA1 8 LEU A 127 LEU A 133 1 O ALA A 131 N LEU A 106 SHEET 7 AA1 8 MET A 244 GLY A 249 1 O LEU A 245 N VAL A 132 SHEET 8 AA1 8 VAL A 271 ILE A 276 1 O GLN A 272 N ALA A 246 SHEET 1 AA2 8 PHE B 11 ILE B 16 0 SHEET 2 AA2 8 ILE B 23 GLY B 29 -1 O VAL B 27 N GLY B 12 SHEET 3 AA2 8 LYS B 59 ALA B 63 -1 O VAL B 60 N GLY B 28 SHEET 4 AA2 8 PRO B 33 LEU B 37 1 N LEU B 34 O ILE B 61 SHEET 5 AA2 8 PHE B 104 HIS B 109 1 O ALA B 105 N LEU B 35 SHEET 6 AA2 8 LEU B 127 LEU B 133 1 O ALA B 131 N LEU B 106 SHEET 7 AA2 8 MET B 244 GLY B 249 1 O LEU B 245 N VAL B 132 SHEET 8 AA2 8 VAL B 271 ILE B 276 1 O ILE B 276 N TRP B 248 CISPEP 1 PHE A 40 PRO A 41 0 -2.02 CISPEP 2 ALA A 163 PRO A 164 0 3.67 CISPEP 3 PHE B 40 PRO B 41 0 -3.16 CISPEP 4 ALA B 163 PRO B 164 0 9.61 SITE 1 AC1 9 ASN A 110 ARG A 111 ARG A 114 ILE A 135 SITE 2 AC1 9 HIS A 155 TRP A 156 TYR A 219 HIS A 280 SITE 3 AC1 9 HOH A 548 SITE 1 AC2 3 ARG A 114 LEU A 136 HOH A 548 SITE 1 AC3 5 ASN B 110 ARG B 111 ARG B 114 HOH B 547 SITE 2 AC3 5 HOH B 654 CRYST1 41.880 78.990 84.980 90.00 103.23 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023878 0.000000 0.005615 0.00000 SCALE2 0.000000 0.012660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012089 0.00000