HEADER OXIDOREDUCTASE 20-MAY-16 5K3X TITLE CRYSTAL STRUCTURE OF THE SULFITE DEHYDROGENASE, SORT R78K MUTANT FROM TITLE 2 SINORHIZOBIUM MELILOTI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SULFITE OXIDASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI; SOURCE 4 ORGANISM_TAXID: 266834; SOURCE 5 STRAIN: 1021; SOURCE 6 GENE: SMC04049; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TP1000; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PPROEX HTB KEYWDS SULFITE DEHYDROGENASE, ELECTRON TRANSFER, SUOX-FOLD, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.LEE,A.MCGRATH,M.MAHER REVDAT 4 27-SEP-23 5K3X 1 REMARK REVDAT 3 08-NOV-17 5K3X 1 JRNL REVDAT 2 25-OCT-17 5K3X 1 JRNL REVDAT 1 24-MAY-17 5K3X 0 JRNL AUTH J.C.HSIAO,A.P.MCGRATH,L.KIELMANN,P.KALIMUTHU,F.DARAIN, JRNL AUTH 2 P.V.BERNHARDT,J.HARMER,M.LEE,K.MEYERS,M.J.MAHER,U.KAPPLER JRNL TITL THE CENTRAL ACTIVE SITE ARGININE IN SULFITE OXIDIZING JRNL TITL 2 ENZYMES ALTERS KINETIC PROPERTIES BY CONTROLLING ELECTRON JRNL TITL 3 TRANSFER AND REDOX INTERACTIONS. JRNL REF BIOCHIM. BIOPHYS. ACTA V.1859 19 2017 JRNL REFN ISSN 0006-3002 JRNL PMID 28986298 JRNL DOI 10.1016/J.BBABIO.2017.10.001 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 72.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 97033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5110 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7060 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2680 REMARK 3 BIN FREE R VALUE SET COUNT : 358 REMARK 3 BIN FREE R VALUE : 0.2530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5147 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 813 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.40000 REMARK 3 B22 (A**2) : -0.51000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.074 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.735 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.959 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5551 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5319 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7613 ; 1.501 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12310 ; 0.920 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 754 ; 5.952 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 219 ;38.052 ;24.703 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 914 ;11.297 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;14.966 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 865 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6367 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1190 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2823 ; 0.976 ; 1.546 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2822 ; 0.973 ; 1.545 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3544 ; 1.578 ; 2.313 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3545 ; 1.579 ; 2.314 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2728 ; 1.656 ; 1.727 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2728 ; 1.656 ; 1.727 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4036 ; 2.657 ; 2.510 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6870 ; 5.692 ;14.117 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6368 ; 4.936 ;12.867 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5K3X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 102224 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 72.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 1.05700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PW9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PCB BUFFER PH 7, 25% PEG1500, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.73500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.81000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.86000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.81000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.73500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.86000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 31 REMARK 465 LYS A 32 REMARK 465 GLU A 33 REMARK 465 THR A 34 REMARK 465 LYS A 35 REMARK 465 PRO A 36 REMARK 465 LEU A 37 REMARK 465 PRO A 38 REMARK 465 ASP A 39 REMARK 465 TYR A 40 REMARK 465 VAL A 41 REMARK 465 ALA A 42 REMARK 465 TRP A 43 REMARK 465 LYS A 44 REMARK 465 ASP A 45 REMARK 465 ALA A 46 REMARK 465 ASP A 47 REMARK 465 ALA A 48 REMARK 465 LEU A 49 REMARK 465 ILE A 50 REMARK 465 VAL A 51 REMARK 465 HIS A 52 REMARK 465 SER A 53 REMARK 465 ASP A 54 REMARK 465 LYS A 55 REMARK 465 THR A 56 REMARK 465 SER B 31 REMARK 465 LYS B 32 REMARK 465 GLU B 33 REMARK 465 THR B 34 REMARK 465 LYS B 35 REMARK 465 PRO B 36 REMARK 465 LEU B 37 REMARK 465 PRO B 38 REMARK 465 ASP B 39 REMARK 465 TYR B 40 REMARK 465 VAL B 41 REMARK 465 ALA B 42 REMARK 465 TRP B 43 REMARK 465 LYS B 44 REMARK 465 ASP B 45 REMARK 465 ALA B 46 REMARK 465 ASP B 47 REMARK 465 ALA B 48 REMARK 465 LEU B 49 REMARK 465 ILE B 50 REMARK 465 VAL B 51 REMARK 465 HIS B 52 REMARK 465 SER B 53 REMARK 465 ASP B 54 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 57 CG CD1 CD2 REMARK 470 LYS A 103 CD CE NZ REMARK 470 LYS A 144 CD CE NZ REMARK 470 LYS A 275 CG CD CE NZ REMARK 470 LYS A 300 CE NZ REMARK 470 LYS B 55 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 MOM1 MSS B 401 O HOH B 566 2.10 REMARK 500 MOM1 MSS A 401 O HOH A 517 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 61 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG B 61 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 68 -64.49 71.85 REMARK 500 ILE A 68 -66.68 73.59 REMARK 500 THR A 151 -89.14 -100.45 REMARK 500 ALA A 154 57.52 -92.98 REMARK 500 TRP A 284 -98.61 -113.77 REMARK 500 GLU A 297 -43.27 -149.86 REMARK 500 ASN A 387 22.52 -145.67 REMARK 500 ILE B 68 -65.12 74.23 REMARK 500 ILE B 68 -63.68 73.09 REMARK 500 THR B 151 -89.57 -97.67 REMARK 500 ALA B 154 55.70 -92.42 REMARK 500 TRP B 284 -99.76 -116.82 REMARK 500 GLU B 297 -52.74 -150.77 REMARK 500 ASN B 387 21.40 -145.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 907 DISTANCE = 6.51 ANGSTROMS REMARK 525 HOH B 906 DISTANCE = 6.95 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MSS A 401 MOM1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 127 SG REMARK 620 2 MSS A 401 S1' 146.1 REMARK 620 3 MSS A 401 S2' 91.9 82.5 REMARK 620 4 MSS A 401 OM1 104.5 108.9 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MSS B 401 MOM1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 127 SG REMARK 620 2 MSS B 401 S1' 145.8 REMARK 620 3 MSS B 401 S2' 90.9 82.2 REMARK 620 4 MSS B 401 OM1 105.5 108.5 108.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MSS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MSS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 403 DBREF 5K3X A 32 399 UNP Q92M24 Q92M24_RHIME 32 399 DBREF 5K3X B 32 399 UNP Q92M24 Q92M24_RHIME 32 399 SEQADV 5K3X SER A 31 UNP Q92M24 EXPRESSION TAG SEQADV 5K3X LYS A 78 UNP Q92M24 ARG 78 CONFLICT SEQADV 5K3X SER B 31 UNP Q92M24 EXPRESSION TAG SEQADV 5K3X LYS B 78 UNP Q92M24 ARG 78 CONFLICT SEQRES 1 A 369 SER LYS GLU THR LYS PRO LEU PRO ASP TYR VAL ALA TRP SEQRES 2 A 369 LYS ASP ALA ASP ALA LEU ILE VAL HIS SER ASP LYS THR SEQRES 3 A 369 LEU GLU THR LYS ARG SER GLU PHE GLY THR SER ILE ILE SEQRES 4 A 369 THR PRO GLU GLU LYS LEU TYR ILE LYS ASN ASN VAL ASN SEQRES 5 A 369 THR PRO PRO GLU SER ILE LEU ALA ASP ARG ASP GLY TRP SEQRES 6 A 369 LYS VAL GLU ILE SER GLY VAL LYS GLU PRO ARG THR LEU SEQRES 7 A 369 THR VAL ALA GLU LEU LYS THR LEU GLY LEU VAL THR ALA SEQRES 8 A 369 ALA THR VAL LEU GLN CYS SER GLY ASN GLY ARG LYS TYR SEQRES 9 A 369 PHE LYS ASP GLN LEU THR GLY ASP GLN LYS MET SER GLY SEQRES 10 A 369 THR PRO TRP THR VAL GLY ALA ALA GLY CYS VAL ILE TRP SEQRES 11 A 369 SER GLY VAL PRO LEU LYS ALA VAL VAL ASP ALA LEU GLY SEQRES 12 A 369 GLY PRO ALA GLU GLY ALA ARG PHE ILE THR GLY THR GLY SEQRES 13 A 369 GLY GLU GLU LEU PRO ALA GLY LEU ASP PRO LYS LEU LEU SEQRES 14 A 369 VAL VAL GLU ARG SER VAL PRO ILE SER ASN LEU ASP ASN SEQRES 15 A 369 VAL ILE LEU ALA TRP GLU MET ASN GLY ARG PRO LEU SER SEQRES 16 A 369 LEU ALA HIS GLY GLY PRO LEU ARG MET VAL VAL PRO GLY SEQRES 17 A 369 TYR SER GLY VAL ASN ASN ILE LYS TYR VAL LYS ALA VAL SEQRES 18 A 369 ALA MET THR GLU VAL GLU THR ASP ALA LYS ILE GLN LYS SEQRES 19 A 369 THR SER TYR ARG VAL HIS ALA LEU GLY GLU LYS GLY SER SEQRES 20 A 369 PRO ASP GLN PRO SER VAL TRP GLU GLN PRO VAL LYS SER SEQRES 21 A 369 TRP ILE THR THR PRO HIS GLU ALA ALA LYS ALA GLY GLN SEQRES 22 A 369 VAL GLN ILE ALA GLY VAL ALA PHE GLY GLY MET ASN ALA SEQRES 23 A 369 CYS LYS SER VAL GLU VAL SER VAL ASP GLY GLY GLN THR SEQRES 24 A 369 TRP GLN GLU ALA GLU PHE ILE GLY PRO ASP LEU GLY ARG SEQRES 25 A 369 PHE ALA TRP ARG VAL PHE ALA LEU SER ALA ASP LEU ALA SEQRES 26 A 369 ARG GLY THR TYR THR LEU VAL SER ARG ALA THR ASP THR SEQRES 27 A 369 GLU GLY ASN VAL GLN PRO GLU GLU THR GLU MET ASN GLY SEQRES 28 A 369 ALA GLY TYR GLY HIS ASN GLY TRP ARG ALA PRO ALA VAL SEQRES 29 A 369 LYS LEU THR VAL ALA SEQRES 1 B 369 SER LYS GLU THR LYS PRO LEU PRO ASP TYR VAL ALA TRP SEQRES 2 B 369 LYS ASP ALA ASP ALA LEU ILE VAL HIS SER ASP LYS THR SEQRES 3 B 369 LEU GLU THR LYS ARG SER GLU PHE GLY THR SER ILE ILE SEQRES 4 B 369 THR PRO GLU GLU LYS LEU TYR ILE LYS ASN ASN VAL ASN SEQRES 5 B 369 THR PRO PRO GLU SER ILE LEU ALA ASP ARG ASP GLY TRP SEQRES 6 B 369 LYS VAL GLU ILE SER GLY VAL LYS GLU PRO ARG THR LEU SEQRES 7 B 369 THR VAL ALA GLU LEU LYS THR LEU GLY LEU VAL THR ALA SEQRES 8 B 369 ALA THR VAL LEU GLN CYS SER GLY ASN GLY ARG LYS TYR SEQRES 9 B 369 PHE LYS ASP GLN LEU THR GLY ASP GLN LYS MET SER GLY SEQRES 10 B 369 THR PRO TRP THR VAL GLY ALA ALA GLY CYS VAL ILE TRP SEQRES 11 B 369 SER GLY VAL PRO LEU LYS ALA VAL VAL ASP ALA LEU GLY SEQRES 12 B 369 GLY PRO ALA GLU GLY ALA ARG PHE ILE THR GLY THR GLY SEQRES 13 B 369 GLY GLU GLU LEU PRO ALA GLY LEU ASP PRO LYS LEU LEU SEQRES 14 B 369 VAL VAL GLU ARG SER VAL PRO ILE SER ASN LEU ASP ASN SEQRES 15 B 369 VAL ILE LEU ALA TRP GLU MET ASN GLY ARG PRO LEU SER SEQRES 16 B 369 LEU ALA HIS GLY GLY PRO LEU ARG MET VAL VAL PRO GLY SEQRES 17 B 369 TYR SER GLY VAL ASN ASN ILE LYS TYR VAL LYS ALA VAL SEQRES 18 B 369 ALA MET THR GLU VAL GLU THR ASP ALA LYS ILE GLN LYS SEQRES 19 B 369 THR SER TYR ARG VAL HIS ALA LEU GLY GLU LYS GLY SER SEQRES 20 B 369 PRO ASP GLN PRO SER VAL TRP GLU GLN PRO VAL LYS SER SEQRES 21 B 369 TRP ILE THR THR PRO HIS GLU ALA ALA LYS ALA GLY GLN SEQRES 22 B 369 VAL GLN ILE ALA GLY VAL ALA PHE GLY GLY MET ASN ALA SEQRES 23 B 369 CYS LYS SER VAL GLU VAL SER VAL ASP GLY GLY GLN THR SEQRES 24 B 369 TRP GLN GLU ALA GLU PHE ILE GLY PRO ASP LEU GLY ARG SEQRES 25 B 369 PHE ALA TRP ARG VAL PHE ALA LEU SER ALA ASP LEU ALA SEQRES 26 B 369 ARG GLY THR TYR THR LEU VAL SER ARG ALA THR ASP THR SEQRES 27 B 369 GLU GLY ASN VAL GLN PRO GLU GLU THR GLU MET ASN GLY SEQRES 28 B 369 ALA GLY TYR GLY HIS ASN GLY TRP ARG ALA PRO ALA VAL SEQRES 29 B 369 LYS LEU THR VAL ALA HET MSS A 401 26 HET GOL A 402 6 HET MSS B 401 26 HET GOL B 402 6 HET GOL B 403 6 HETNAM MSS (MOLYBDOPTERIN-S,S)-OXO-MOLYBDENUM HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MSS 2(C10 H12 MO N5 O7 P S2) FORMUL 4 GOL 3(C3 H8 O3) FORMUL 8 HOH *813(H2 O) HELIX 1 AA1 LYS A 60 PHE A 64 5 5 HELIX 2 AA2 PRO A 85 ALA A 90 5 6 HELIX 3 AA3 ASP A 91 GLY A 94 5 4 HELIX 4 AA4 VAL A 110 GLY A 117 1 8 HELIX 5 AA5 GLY A 131 ASP A 137 1 7 HELIX 6 AA6 LEU A 165 LEU A 172 1 8 HELIX 7 AA7 ASP A 195 LEU A 199 5 5 HELIX 8 AA8 SER A 208 LEU A 210 5 3 HELIX 9 AA9 SER A 240 ASN A 244 5 5 HELIX 10 AB1 ALA A 260 THR A 265 1 6 HELIX 11 AB2 LYS B 60 PHE B 64 5 5 HELIX 12 AB3 PRO B 85 ALA B 90 5 6 HELIX 13 AB4 ASP B 91 GLY B 94 5 4 HELIX 14 AB5 VAL B 110 GLY B 117 1 8 HELIX 15 AB6 GLY B 131 ASP B 137 1 7 HELIX 16 AB7 LEU B 165 LEU B 172 1 8 HELIX 17 AB8 ASP B 195 LEU B 199 5 5 HELIX 18 AB9 SER B 208 LEU B 210 5 3 HELIX 19 AC1 SER B 225 GLY B 229 5 5 HELIX 20 AC2 SER B 240 ASN B 244 5 5 HELIX 21 AC3 ALA B 260 THR B 265 1 6 SHEET 1 AA1 5 ARG A 106 THR A 109 0 SHEET 2 AA1 5 LYS A 96 SER A 100 -1 N VAL A 97 O LEU A 108 SHEET 3 AA1 5 VAL A 248 THR A 254 1 O VAL A 251 N GLU A 98 SHEET 4 AA1 5 PHE A 181 GLY A 186 -1 N THR A 183 O ALA A 252 SHEET 5 AA1 5 GLU A 202 PRO A 206 -1 O VAL A 205 N ILE A 182 SHEET 1 AA2 4 VAL A 119 GLN A 126 0 SHEET 2 AA2 4 ALA A 155 PRO A 164 -1 O TRP A 160 N ALA A 121 SHEET 3 AA2 4 ILE A 214 MET A 219 -1 O LEU A 215 N VAL A 163 SHEET 4 AA2 4 ARG A 222 PRO A 223 -1 O ARG A 222 N MET A 219 SHEET 1 AA3 4 VAL A 119 GLN A 126 0 SHEET 2 AA3 4 ALA A 155 PRO A 164 -1 O TRP A 160 N ALA A 121 SHEET 3 AA3 4 ILE A 214 MET A 219 -1 O LEU A 215 N VAL A 163 SHEET 4 AA3 4 ARG A 233 VAL A 235 -1 O VAL A 235 N ILE A 214 SHEET 1 AA4 4 LYS A 289 THR A 294 0 SHEET 2 AA4 4 GLY A 302 PHE A 311 -1 O PHE A 311 N LYS A 289 SHEET 3 AA4 4 ARG A 346 LEU A 354 -1 O LEU A 350 N ILE A 306 SHEET 4 AA4 4 GLU A 334 ILE A 336 -1 N GLU A 334 O ALA A 349 SHEET 1 AA5 5 ALA A 298 ALA A 299 0 SHEET 2 AA5 5 VAL A 394 VAL A 398 1 O THR A 397 N ALA A 299 SHEET 3 AA5 5 GLY A 357 ASP A 367 -1 N LEU A 361 O VAL A 394 SHEET 4 AA5 5 CYS A 317 SER A 323 -1 N GLU A 321 O ARG A 364 SHEET 5 AA5 5 GLN A 331 GLU A 332 -1 O GLN A 331 N VAL A 322 SHEET 1 AA6 5 ARG B 106 THR B 109 0 SHEET 2 AA6 5 LYS B 96 SER B 100 -1 N VAL B 97 O LEU B 108 SHEET 3 AA6 5 VAL B 248 THR B 254 1 O VAL B 251 N GLU B 98 SHEET 4 AA6 5 PHE B 181 GLY B 186 -1 N THR B 183 O ALA B 252 SHEET 5 AA6 5 GLU B 202 PRO B 206 -1 O VAL B 205 N ILE B 182 SHEET 1 AA7 4 VAL B 119 GLN B 126 0 SHEET 2 AA7 4 ALA B 155 PRO B 164 -1 O TRP B 160 N ALA B 121 SHEET 3 AA7 4 ILE B 214 MET B 219 -1 O LEU B 215 N VAL B 163 SHEET 4 AA7 4 ARG B 222 PRO B 223 -1 O ARG B 222 N MET B 219 SHEET 1 AA8 4 VAL B 119 GLN B 126 0 SHEET 2 AA8 4 ALA B 155 PRO B 164 -1 O TRP B 160 N ALA B 121 SHEET 3 AA8 4 ILE B 214 MET B 219 -1 O LEU B 215 N VAL B 163 SHEET 4 AA8 4 ARG B 233 VAL B 235 -1 O VAL B 235 N ILE B 214 SHEET 1 AA9 4 LYS B 289 THR B 294 0 SHEET 2 AA9 4 GLY B 302 PHE B 311 -1 O PHE B 311 N LYS B 289 SHEET 3 AA9 4 ARG B 346 LEU B 354 -1 O ALA B 352 N VAL B 304 SHEET 4 AA9 4 GLU B 334 ILE B 336 -1 N ILE B 336 O VAL B 347 SHEET 1 AB1 5 ALA B 298 ALA B 299 0 SHEET 2 AB1 5 VAL B 394 VAL B 398 1 O THR B 397 N ALA B 299 SHEET 3 AB1 5 GLY B 357 ASP B 367 -1 N GLY B 357 O VAL B 398 SHEET 4 AB1 5 CYS B 317 SER B 323 -1 N GLU B 321 O ARG B 364 SHEET 5 AB1 5 GLN B 331 GLU B 332 -1 O GLN B 331 N VAL B 322 LINK SG CYS A 127 MOM1 MSS A 401 1555 1555 2.46 LINK SG CYS B 127 MOM1 MSS B 401 1555 1555 2.47 CISPEP 1 GLY A 230 PRO A 231 0 10.38 CISPEP 2 THR A 294 PRO A 295 0 -6.17 CISPEP 3 GLY B 230 PRO B 231 0 11.66 CISPEP 4 THR B 294 PRO B 295 0 -11.14 SITE 1 AC1 20 TYR A 76 ILE A 77 LYS A 78 ASN A 79 SITE 2 AC1 20 ASN A 80 LEU A 125 CYS A 127 SER A 128 SITE 3 AC1 20 GLY A 186 GLU A 188 VAL A 201 HIS A 228 SITE 4 AC1 20 ARG A 233 GLY A 241 VAL A 242 ASN A 244 SITE 5 AC1 20 LYS A 246 TYR A 247 TYR A 267 HOH A 517 SITE 1 AC2 6 GLN A 305 GLU A 334 HOH A 508 HOH A 656 SITE 2 AC2 6 GLY B 117 LEU B 118 SITE 1 AC3 21 TYR B 76 ILE B 77 LYS B 78 ASN B 79 SITE 2 AC3 21 ASN B 80 LEU B 125 CYS B 127 SER B 128 SITE 3 AC3 21 GLY B 186 GLU B 188 VAL B 201 HIS B 228 SITE 4 AC3 21 ARG B 233 SER B 240 GLY B 241 VAL B 242 SITE 5 AC3 21 ASN B 244 LYS B 246 TYR B 247 TYR B 267 SITE 6 AC3 21 HOH B 566 SITE 1 AC4 7 LYS A 318 THR A 368 THR B 56 GLU B 58 SITE 2 AC4 7 HOH B 530 HOH B 544 HOH B 663 SITE 1 AC5 8 GLY A 117 LEU A 118 GLN B 305 GLU B 334 SITE 2 AC5 8 SER B 351 HOH B 529 HOH B 600 HOH B 622 CRYST1 73.470 95.720 109.620 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013611 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010447 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009122 0.00000