HEADER TRANSFERASE 20-MAY-16 5K41 TITLE STRUCTURE OF MYCOBACTERIUM THERMORESISTIBILE TREHALOSE-6-PHOSPHATE TITLE 2 SYNTHASE IN A COMPLEX WITH ADP-GLUCOSE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM THERMORESISTIBILE; SOURCE 3 ORGANISM_TAXID: 1797; SOURCE 4 ATCC: 19527; SOURCE 5 GENE: RMCT_1906; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OTSA TREHALOSE-6-PHOSPHATE SYNTHASE, TREHALOSE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.MENDES,N.VERMA,M.BLASZCZYK,T.L.BLUNDELL REVDAT 4 10-JAN-24 5K41 1 REMARK REVDAT 3 22-JAN-20 5K41 1 JRNL REVDAT 2 13-SEP-17 5K41 1 REMARK REVDAT 1 21-JUN-17 5K41 0 JRNL AUTH V.MENDES,M.ACEBRON-GARCIA-DE-EULATE,N.VERMA,M.BLASZCZYK, JRNL AUTH 2 M.V.B.DIAS,T.L.BLUNDELL JRNL TITL MYCOBACTERIAL OTSA STRUCTURES UNVEIL SUBSTRATE PREFERENCE JRNL TITL 2 MECHANISM AND ALLOSTERIC REGULATION BY 2-OXOGLUTARATE AND JRNL TITL 3 2-PHOSPHOGLYCERATE. JRNL REF MBIO V. 10 2019 JRNL REFN ESSN 2150-7511 JRNL PMID 31772052 JRNL DOI 10.1128/MBIO.02272-19 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.09 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 59634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.165 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2850 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 90.1881 - 5.3495 1.00 3052 160 0.1576 0.1666 REMARK 3 2 5.3495 - 4.2461 1.00 2936 130 0.1299 0.1260 REMARK 3 3 4.2461 - 3.7093 1.00 2893 134 0.1358 0.1455 REMARK 3 4 3.7093 - 3.3702 1.00 2892 121 0.1501 0.1772 REMARK 3 5 3.3702 - 3.1286 1.00 2858 155 0.1650 0.2037 REMARK 3 6 3.1286 - 2.9441 1.00 2842 142 0.1738 0.2177 REMARK 3 7 2.9441 - 2.7967 1.00 2823 160 0.1686 0.1750 REMARK 3 8 2.7967 - 2.6749 1.00 2825 143 0.1763 0.2303 REMARK 3 9 2.6749 - 2.5719 1.00 2833 140 0.1729 0.2201 REMARK 3 10 2.5719 - 2.4832 1.00 2821 149 0.1728 0.2050 REMARK 3 11 2.4832 - 2.4055 1.00 2807 135 0.1716 0.2144 REMARK 3 12 2.4055 - 2.3368 1.00 2847 137 0.1769 0.2510 REMARK 3 13 2.3368 - 2.2752 1.00 2777 155 0.1712 0.2255 REMARK 3 14 2.2752 - 2.2197 1.00 2822 136 0.1877 0.2030 REMARK 3 15 2.2197 - 2.1693 1.00 2776 144 0.1901 0.2445 REMARK 3 16 2.1693 - 2.1231 0.99 2816 130 0.1994 0.2361 REMARK 3 17 2.1231 - 2.0806 0.99 2778 159 0.2171 0.2702 REMARK 3 18 2.0806 - 2.0414 1.00 2790 138 0.2381 0.2533 REMARK 3 19 2.0414 - 2.0049 1.00 2803 136 0.2496 0.2894 REMARK 3 20 2.0049 - 1.9709 1.00 2793 146 0.2820 0.3125 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.360 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3829 REMARK 3 ANGLE : 1.042 5215 REMARK 3 CHIRALITY : 0.042 581 REMARK 3 PLANARITY : 0.004 676 REMARK 3 DIHEDRAL : 14.109 1408 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4782 123.3539 249.6232 REMARK 3 T TENSOR REMARK 3 T11: 0.3826 T22: 0.6860 REMARK 3 T33: 0.3024 T12: 0.1929 REMARK 3 T13: -0.0138 T23: -0.0345 REMARK 3 L TENSOR REMARK 3 L11: 2.1296 L22: 1.3736 REMARK 3 L33: 1.5943 L12: 0.0168 REMARK 3 L13: 0.2355 L23: 0.3810 REMARK 3 S TENSOR REMARK 3 S11: -0.0753 S12: 0.1475 S13: 0.2445 REMARK 3 S21: -0.1538 S22: -0.0643 S23: 0.3155 REMARK 3 S31: -0.4884 S32: -0.9265 S33: 0.1043 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.4125 113.6188 234.1945 REMARK 3 T TENSOR REMARK 3 T11: 0.2796 T22: 0.2446 REMARK 3 T33: 0.1878 T12: -0.0089 REMARK 3 T13: -0.0014 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.1867 L22: 0.8590 REMARK 3 L33: 2.3660 L12: 0.2373 REMARK 3 L13: -0.4041 L23: -0.0617 REMARK 3 S TENSOR REMARK 3 S11: -0.0660 S12: 0.1160 S13: 0.0071 REMARK 3 S21: -0.0837 S22: 0.0191 S23: 0.0940 REMARK 3 S31: 0.0727 S32: -0.4203 S33: 0.0440 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K41 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221692. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96862 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59763 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 102.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.68900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.3 REMARK 200 STARTING MODEL: 5JIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CHES PH 10, 0.7M SODIUM POTASSIUM REMARK 280 TARTRATE, 10% V/V ETHYLENE GLYCOL., VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.70600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 63.70600 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.81000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.70600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.40500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.70600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 154.21500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.70600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 154.21500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.70600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.40500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 63.70600 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 63.70600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 102.81000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.70600 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.70600 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 102.81000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.70600 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 154.21500 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.70600 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 51.40500 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.70600 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 51.40500 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.70600 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 154.21500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.70600 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.70600 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 102.81000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -63.70600 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 63.70600 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 514.05000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 127.41200 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 254.82400 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 191.11800 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 191.11800 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 514.05000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 878 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 926 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 GLU A 24 REMARK 465 ARG A 25 REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 ASP A 28 REMARK 465 GLY A 29 REMARK 465 THR A 30 REMARK 465 THR A 31 REMARK 465 THR A 478 REMARK 465 GLY A 479 REMARK 465 ASP A 480 REMARK 465 ALA A 481 REMARK 465 ASP A 482 REMARK 465 ALA A 483 REMARK 465 VAL A 484 REMARK 465 PRO A 485 REMARK 465 VAL A 486 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 LEU A 23 CG CD1 CD2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 51 NE CZ NH1 NH2 REMARK 470 ILE A 61 CD1 REMARK 470 ASP A 65 CG OD1 OD2 REMARK 470 ARG A 80 CD NE CZ NH1 NH2 REMARK 470 ARG A 136 CZ NH1 NH2 REMARK 470 GLN A 234 CD OE1 NE2 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 90 -64.35 -96.92 REMARK 500 HIS A 103 51.69 -94.08 REMARK 500 VAL A 105 48.31 39.25 REMARK 500 ASP A 144 178.49 77.24 REMARK 500 MET A 387 -62.86 -133.17 REMARK 500 ASN A 388 100.70 81.86 REMARK 500 ARG A 398 57.27 -92.11 REMARK 500 PHE A 410 30.64 -93.77 REMARK 500 LEU A 417 47.40 -106.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADQ A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 DBREF1 5K41 A 1 486 UNP A0A117IMA6_MYCTH DBREF2 5K41 A A0A117IMA6 1 486 SEQADV 5K41 SER A 0 UNP A0A117IMA EXPRESSION TAG SEQRES 1 A 487 SER MET ALA ASP ARG GLY ASP SER GLY ASP SER ASP PHE SEQRES 2 A 487 VAL VAL VAL ALA ASN ARG LEU PRO ILE ASP LEU GLU ARG SEQRES 3 A 487 ALA PRO ASP GLY THR THR SER TRP LYS ARG SER PRO GLY SEQRES 4 A 487 GLY LEU VAL THR ALA LEU GLU PRO LEU LEU ARG ARG ARG SEQRES 5 A 487 ARG GLY ALA TRP ILE GLY TRP PRO GLY ILE PRO ASP SER SEQRES 6 A 487 ASP GLU ASP PRO ILE VAL ASP GLY ASP LEU VAL LEU TYR SEQRES 7 A 487 PRO VAL ARG LEU SER ALA ASP ASP VAL ALA GLN TYR TYR SEQRES 8 A 487 GLU GLY PHE SER ASN ALA THR LEU TRP PRO LEU TYR HIS SEQRES 9 A 487 ASP VAL ILE VAL LYS PRO ILE TYR ASN ARG GLN TRP TRP SEQRES 10 A 487 GLU ARG TYR VAL GLU VAL ASN ARG ARG PHE ALA GLU ALA SEQRES 11 A 487 THR SER ARG ALA ALA ALA ARG GLY ALA THR VAL TRP VAL SEQRES 12 A 487 GLN ASP TYR GLN LEU GLN LEU VAL PRO LYS MET LEU ARG SEQRES 13 A 487 GLU LEU ARG PRO ASP LEU THR ILE GLY PHE PHE LEU HIS SEQRES 14 A 487 ILE PRO PHE PRO PRO VAL GLU LEU PHE MET GLN LEU PRO SEQRES 15 A 487 TRP ARG THR GLU ILE THR ASP GLY LEU LEU GLY ALA ASP SEQRES 16 A 487 LEU VAL GLY PHE HIS LEU PRO GLY GLY ALA GLN ASN PHE SEQRES 17 A 487 LEU PHE LEU ALA ARG ARG LEU VAL GLY ALA ASN THR SER SEQRES 18 A 487 ARG ALA SER VAL GLY VAL ARG SER LYS PHE GLY GLU VAL SEQRES 19 A 487 GLN ILE GLY SER ARG THR VAL LYS VAL GLY ALA PHE PRO SEQRES 20 A 487 ILE SER ILE ASP SER ALA ASP LEU ASP ARG GLN ALA ARG SEQRES 21 A 487 GLN ARG SER ILE ARG GLN ARG ALA ARG GLN ILE ARG ALA SEQRES 22 A 487 GLU LEU GLY ASN PRO ARG ARG ILE LEU LEU GLY VAL ASP SEQRES 23 A 487 ARG LEU ASP TYR THR LYS GLY ILE ASP VAL ARG LEU GLN SEQRES 24 A 487 ALA PHE ALA GLU LEU LEU ALA GLU GLY ARG VAL ASN ARG SEQRES 25 A 487 GLU ASP THR VAL PHE VAL GLN LEU ALA THR PRO SER ARG SEQRES 26 A 487 GLU ARG VAL GLU ALA TYR ARG LEU LEU ARG ASP ASP ILE SEQRES 27 A 487 GLU ARG GLN VAL GLY HIS ILE ASN GLY GLU TYR GLY GLU SEQRES 28 A 487 VAL GLY HIS PRO VAL VAL HIS TYR LEU HIS ARG PRO VAL SEQRES 29 A 487 PRO ARG GLU GLU LEU ILE ALA PHE PHE VAL ALA ALA ASP SEQRES 30 A 487 VAL MET LEU VAL THR PRO LEU ARG ASP GLY MET ASN LEU SEQRES 31 A 487 VAL ALA LYS GLU TYR VAL ALA CYS ARG SER ASP LEU GLY SEQRES 32 A 487 GLY ALA LEU VAL LEU SER GLU PHE THR GLY ALA ALA ALA SEQRES 33 A 487 GLU LEU GLY GLN ALA TYR LEU VAL ASN PRO HIS ASN LEU SEQRES 34 A 487 ASP HIS VAL LYS ASP THR MET VAL ALA ALA LEU ASN GLN SEQRES 35 A 487 THR PRO GLU GLU GLY ARG ARG ARG MET ARG ALA LEU ARG SEQRES 36 A 487 ARG GLN VAL LEU ALA HIS ASP VAL ASP LEU TRP ALA ARG SEQRES 37 A 487 SER PHE LEU ASP ALA LEU ALA SER THR ARG THR GLY ASP SEQRES 38 A 487 ALA ASP ALA VAL PRO VAL HET ADQ A 501 38 HET NHE A 502 13 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HETNAM ADQ ADENOSINE-5'-DIPHOSPHATE-GLUCOSE HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN ADQ ADENOSINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 ADQ ESTER HETSYN NHE N-CYCLOHEXYLTAURINE; CHES HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ADQ C16 H25 N5 O15 P2 FORMUL 3 NHE C8 H17 N O3 S FORMUL 4 EDO 5(C2 H6 O2) FORMUL 9 HOH *357(H2 O) HELIX 1 AA1 GLY A 38 LEU A 44 1 7 HELIX 2 AA2 LEU A 44 ARG A 49 1 6 HELIX 3 AA3 SER A 82 TYR A 90 1 9 HELIX 4 AA4 GLY A 92 THR A 97 1 6 HELIX 5 AA5 THR A 97 HIS A 103 1 7 HELIX 6 AA6 ASN A 112 ALA A 133 1 22 HELIX 7 AA7 TYR A 145 GLN A 148 5 4 HELIX 8 AA8 LEU A 149 ARG A 158 1 10 HELIX 9 AA9 PRO A 173 MET A 178 1 6 HELIX 10 AB1 TRP A 182 LEU A 191 1 10 HELIX 11 AB2 LEU A 200 LEU A 214 1 15 HELIX 12 AB3 ASP A 250 ARG A 259 1 10 HELIX 13 AB4 GLN A 260 LEU A 274 1 15 HELIX 14 AB5 ASP A 288 LYS A 291 5 4 HELIX 15 AB6 GLY A 292 GLU A 306 1 15 HELIX 16 AB7 VAL A 327 GLY A 349 1 23 HELIX 17 AB8 PRO A 364 ALA A 375 1 12 HELIX 18 AB9 ASN A 388 ARG A 398 1 11 HELIX 19 AC1 THR A 411 GLU A 416 5 6 HELIX 20 AC2 ASN A 427 ASN A 440 1 14 HELIX 21 AC3 THR A 442 HIS A 460 1 19 HELIX 22 AC4 ASP A 461 SER A 475 1 15 SHEET 1 AA1 9 ILE A 69 VAL A 70 0 SHEET 2 AA1 9 VAL A 75 PRO A 78 -1 O LEU A 76 N ILE A 69 SHEET 3 AA1 9 GLY A 53 TRP A 58 1 N TRP A 55 O TYR A 77 SHEET 4 AA1 9 SER A 10 ARG A 18 1 N VAL A 14 O ILE A 56 SHEET 5 AA1 9 ALA A 134 GLN A 143 1 O GLN A 143 N VAL A 15 SHEET 6 AA1 9 THR A 162 PHE A 166 1 O GLY A 164 N VAL A 140 SHEET 7 AA1 9 LEU A 195 PHE A 198 1 O GLY A 197 N PHE A 165 SHEET 8 AA1 9 ARG A 238 ALA A 244 1 O LYS A 241 N VAL A 196 SHEET 9 AA1 9 GLY A 231 ILE A 235 -1 N GLY A 231 O VAL A 242 SHEET 1 AA2 2 ILE A 21 ASP A 22 0 SHEET 2 AA2 2 LYS A 34 ARG A 35 -1 O LYS A 34 N ASP A 22 SHEET 1 AA3 6 VAL A 356 HIS A 360 0 SHEET 2 AA3 6 THR A 314 THR A 321 1 N GLN A 318 O HIS A 357 SHEET 3 AA3 6 ARG A 279 ARG A 286 1 N GLY A 283 O LEU A 319 SHEET 4 AA3 6 VAL A 377 VAL A 380 1 O LEU A 379 N LEU A 282 SHEET 5 AA3 6 LEU A 405 SER A 408 1 O VAL A 406 N MET A 378 SHEET 6 AA3 6 TYR A 421 VAL A 423 1 O TYR A 421 N LEU A 405 SITE 1 AC1 28 TRP A 99 HIS A 168 HIS A 199 ILE A 247 SITE 2 AC1 28 VAL A 284 ASP A 285 ARG A 286 LYS A 291 SITE 3 AC1 28 LEU A 319 THR A 321 ARG A 361 VAL A 363 SITE 4 AC1 28 ARG A 365 LEU A 368 ASP A 385 GLY A 386 SITE 5 AC1 28 MET A 387 ASN A 388 LEU A 389 VAL A 390 SITE 6 AC1 28 GLU A 393 HOH A 617 HOH A 641 HOH A 704 SITE 7 AC1 28 HOH A 713 HOH A 741 HOH A 823 HOH A 851 SITE 1 AC2 8 GLU A 175 MET A 178 ARG A 183 ARG A 213 SITE 2 AC2 8 ARG A 384 GLU A 409 HOH A 685 HOH A 850 SITE 1 AC3 8 LEU A 287 PRO A 322 SER A 323 GLU A 325 SITE 2 AC3 8 ARG A 334 HIS A 360 HOH A 624 HOH A 660 SITE 1 AC4 5 GLN A 298 ALA A 301 ARG A 339 GLN A 340 SITE 2 AC4 5 HIS A 343 SITE 1 AC5 6 ASN A 345 GLU A 350 PRO A 354 HIS A 357 SITE 2 AC5 6 TYR A 358 HOH A 601 SITE 1 AC6 7 ARG A 213 LEU A 214 GLU A 444 ARG A 448 SITE 2 AC6 7 ARG A 451 HOH A 765 HOH A 845 SITE 1 AC7 2 HIS A 430 ASP A 433 CRYST1 127.412 127.412 205.620 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007849 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004863 0.00000