HEADER TRANSFERASE 20-MAY-16 5K42 TITLE STRUCTURE OF MYCOBACTERIUM THERMORESISTIBILE TREHALOSE-6-PHOSPHATE TITLE 2 SYNTHASE IN A COMPLEX WITH GDP-GLUCOSE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM THERMORESISTIBILE; SOURCE 3 ORGANISM_TAXID: 1797; SOURCE 4 ATCC: 19527; SOURCE 5 GENE: RMCT_1906; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OTSA TREHALOSE-6-PHOSPHATE SYNTHASE, TREHALOSE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.MENDES,N.VERMA,M.BLASZCZYK,T.L.BLUNDELL REVDAT 4 10-JAN-24 5K42 1 REMARK REVDAT 3 22-JAN-20 5K42 1 JRNL REVDAT 2 13-SEP-17 5K42 1 REMARK REVDAT 1 21-JUN-17 5K42 0 JRNL AUTH V.MENDES,M.ACEBRON-GARCIA-DE-EULATE,N.VERMA,M.BLASZCZYK, JRNL AUTH 2 M.V.B.DIAS,T.L.BLUNDELL JRNL TITL MYCOBACTERIAL OTSA STRUCTURES UNVEIL SUBSTRATE PREFERENCE JRNL TITL 2 MECHANISM AND ALLOSTERIC REGULATION BY 2-OXOGLUTARATE AND JRNL TITL 3 2-PHOSPHOGLYCERATE. JRNL REF MBIO V. 10 2019 JRNL REFN ESSN 2150-7511 JRNL PMID 31772052 JRNL DOI 10.1128/MBIO.02272-19 REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 64577 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3248 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.0225 - 5.4591 1.00 2894 141 0.1505 0.1759 REMARK 3 2 5.4591 - 4.3342 1.00 2753 148 0.1201 0.1528 REMARK 3 3 4.3342 - 3.7866 1.00 2720 145 0.1232 0.1217 REMARK 3 4 3.7866 - 3.4406 1.00 2695 135 0.1386 0.1777 REMARK 3 5 3.4406 - 3.1940 1.00 2711 126 0.1566 0.1830 REMARK 3 6 3.1940 - 3.0058 1.00 2696 144 0.1640 0.1982 REMARK 3 7 3.0058 - 2.8553 1.00 2636 166 0.1567 0.1764 REMARK 3 8 2.8553 - 2.7310 1.00 2664 146 0.1642 0.1981 REMARK 3 9 2.7310 - 2.6259 1.00 2674 148 0.1628 0.1938 REMARK 3 10 2.6259 - 2.5353 1.00 2638 136 0.1541 0.2125 REMARK 3 11 2.5353 - 2.4560 1.00 2653 153 0.1553 0.2009 REMARK 3 12 2.4560 - 2.3858 1.00 2687 124 0.1615 0.1758 REMARK 3 13 2.3858 - 2.3230 1.00 2608 172 0.1571 0.1952 REMARK 3 14 2.3230 - 2.2663 1.00 2670 120 0.1619 0.1819 REMARK 3 15 2.2663 - 2.2148 0.99 2628 136 0.2240 0.2565 REMARK 3 16 2.2148 - 2.1677 1.00 2642 138 0.1756 0.2164 REMARK 3 17 2.1677 - 2.1243 1.00 2649 147 0.1871 0.2026 REMARK 3 18 2.1243 - 2.0842 1.00 2646 124 0.2007 0.2462 REMARK 3 19 2.0842 - 2.0470 1.00 2619 133 0.2387 0.2725 REMARK 3 20 2.0470 - 2.0123 1.00 2634 155 0.2211 0.2674 REMARK 3 21 2.0123 - 1.9798 1.00 2644 133 0.2307 0.2823 REMARK 3 22 1.9798 - 1.9494 1.00 2636 133 0.2620 0.2682 REMARK 3 23 1.9494 - 1.9207 0.97 2532 145 0.3053 0.3642 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.760 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3836 REMARK 3 ANGLE : 1.045 5228 REMARK 3 CHIRALITY : 0.045 582 REMARK 3 PLANARITY : 0.005 678 REMARK 3 DIHEDRAL : 13.440 1416 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 155.7682 122.9892 44.6117 REMARK 3 T TENSOR REMARK 3 T11: 0.3366 T22: 0.5712 REMARK 3 T33: 0.3153 T12: 0.1715 REMARK 3 T13: -0.0394 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.3129 L22: 1.4749 REMARK 3 L33: 1.3831 L12: -0.0669 REMARK 3 L13: 0.4588 L23: 0.2841 REMARK 3 S TENSOR REMARK 3 S11: -0.1334 S12: 0.0728 S13: 0.3141 REMARK 3 S21: -0.1734 S22: -0.0363 S23: 0.3004 REMARK 3 S31: -0.4523 S32: -0.8213 S33: 0.1117 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 215 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 173.6216 113.5060 28.6715 REMARK 3 T TENSOR REMARK 3 T11: 0.2410 T22: 0.1922 REMARK 3 T33: 0.2067 T12: 0.0107 REMARK 3 T13: -0.0051 T23: -0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.6114 L22: 0.9277 REMARK 3 L33: 2.0978 L12: 0.3530 REMARK 3 L13: -0.5175 L23: -0.2091 REMARK 3 S TENSOR REMARK 3 S11: -0.0291 S12: 0.0398 S13: 0.0673 REMARK 3 S21: -0.0937 S22: -0.0011 S23: 0.0642 REMARK 3 S31: 0.0559 S32: -0.3612 S33: 0.0263 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K42 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221691. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96862 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64773 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 108.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.00 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : 0.99500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.3 REMARK 200 STARTING MODEL: 5JIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CHES PH 10 0.7M SODIUM POTASSIUM REMARK 280 TARTRATE 10% V/V ETHYLENE GLYCOL., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.65400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 63.65400 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.39100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.65400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.69550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.65400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 155.08650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.65400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 155.08650 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.65400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.69550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 63.65400 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 63.65400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.39100 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.65400 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.65400 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 103.39100 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.65400 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 155.08650 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.65400 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 51.69550 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.65400 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 51.69550 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.65400 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 155.08650 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.65400 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.65400 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 103.39100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 63.65400 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -63.65400 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 103.39100 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 381.92400 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 254.61600 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 318.27000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 318.27000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 103.39100 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 836 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 GLU A 24 REMARK 465 ARG A 25 REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 ASP A 28 REMARK 465 GLY A 29 REMARK 465 THR A 30 REMARK 465 THR A 31 REMARK 465 SER A 32 REMARK 465 THR A 478 REMARK 465 GLY A 479 REMARK 465 ASP A 480 REMARK 465 ALA A 481 REMARK 465 ASP A 482 REMARK 465 ALA A 483 REMARK 465 VAL A 484 REMARK 465 PRO A 485 REMARK 465 VAL A 486 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 LEU A 23 CG CD1 CD2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 ARG A 35 NE CZ NH1 NH2 REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 50 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 51 NE CZ NH1 NH2 REMARK 470 ARG A 52 CZ NH1 NH2 REMARK 470 ILE A 61 CD1 REMARK 470 ARG A 80 NE CZ NH1 NH2 REMARK 470 GLU A 121 CD OE1 OE2 REMARK 470 ARG A 136 CD NE CZ NH1 NH2 REMARK 470 LYS A 241 NZ REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 325 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 677 O HOH A 677 10875 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 90 -64.30 -100.70 REMARK 500 THR A 97 -65.56 -108.16 REMARK 500 HIS A 103 49.95 -98.58 REMARK 500 VAL A 105 50.28 35.52 REMARK 500 ASP A 144 175.80 78.46 REMARK 500 MET A 387 -63.40 -133.38 REMARK 500 ASN A 388 101.17 84.23 REMARK 500 ARG A 398 59.06 -92.26 REMARK 500 LEU A 417 49.61 -109.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NHE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 508 DBREF1 5K42 A 1 486 UNP A0A117IMA6_MYCTH DBREF2 5K42 A A0A117IMA6 1 486 SEQADV 5K42 SER A 0 UNP A0A117IMA EXPRESSION TAG SEQRES 1 A 487 SER MET ALA ASP ARG GLY ASP SER GLY ASP SER ASP PHE SEQRES 2 A 487 VAL VAL VAL ALA ASN ARG LEU PRO ILE ASP LEU GLU ARG SEQRES 3 A 487 ALA PRO ASP GLY THR THR SER TRP LYS ARG SER PRO GLY SEQRES 4 A 487 GLY LEU VAL THR ALA LEU GLU PRO LEU LEU ARG ARG ARG SEQRES 5 A 487 ARG GLY ALA TRP ILE GLY TRP PRO GLY ILE PRO ASP SER SEQRES 6 A 487 ASP GLU ASP PRO ILE VAL ASP GLY ASP LEU VAL LEU TYR SEQRES 7 A 487 PRO VAL ARG LEU SER ALA ASP ASP VAL ALA GLN TYR TYR SEQRES 8 A 487 GLU GLY PHE SER ASN ALA THR LEU TRP PRO LEU TYR HIS SEQRES 9 A 487 ASP VAL ILE VAL LYS PRO ILE TYR ASN ARG GLN TRP TRP SEQRES 10 A 487 GLU ARG TYR VAL GLU VAL ASN ARG ARG PHE ALA GLU ALA SEQRES 11 A 487 THR SER ARG ALA ALA ALA ARG GLY ALA THR VAL TRP VAL SEQRES 12 A 487 GLN ASP TYR GLN LEU GLN LEU VAL PRO LYS MET LEU ARG SEQRES 13 A 487 GLU LEU ARG PRO ASP LEU THR ILE GLY PHE PHE LEU HIS SEQRES 14 A 487 ILE PRO PHE PRO PRO VAL GLU LEU PHE MET GLN LEU PRO SEQRES 15 A 487 TRP ARG THR GLU ILE THR ASP GLY LEU LEU GLY ALA ASP SEQRES 16 A 487 LEU VAL GLY PHE HIS LEU PRO GLY GLY ALA GLN ASN PHE SEQRES 17 A 487 LEU PHE LEU ALA ARG ARG LEU VAL GLY ALA ASN THR SER SEQRES 18 A 487 ARG ALA SER VAL GLY VAL ARG SER LYS PHE GLY GLU VAL SEQRES 19 A 487 GLN ILE GLY SER ARG THR VAL LYS VAL GLY ALA PHE PRO SEQRES 20 A 487 ILE SER ILE ASP SER ALA ASP LEU ASP ARG GLN ALA ARG SEQRES 21 A 487 GLN ARG SER ILE ARG GLN ARG ALA ARG GLN ILE ARG ALA SEQRES 22 A 487 GLU LEU GLY ASN PRO ARG ARG ILE LEU LEU GLY VAL ASP SEQRES 23 A 487 ARG LEU ASP TYR THR LYS GLY ILE ASP VAL ARG LEU GLN SEQRES 24 A 487 ALA PHE ALA GLU LEU LEU ALA GLU GLY ARG VAL ASN ARG SEQRES 25 A 487 GLU ASP THR VAL PHE VAL GLN LEU ALA THR PRO SER ARG SEQRES 26 A 487 GLU ARG VAL GLU ALA TYR ARG LEU LEU ARG ASP ASP ILE SEQRES 27 A 487 GLU ARG GLN VAL GLY HIS ILE ASN GLY GLU TYR GLY GLU SEQRES 28 A 487 VAL GLY HIS PRO VAL VAL HIS TYR LEU HIS ARG PRO VAL SEQRES 29 A 487 PRO ARG GLU GLU LEU ILE ALA PHE PHE VAL ALA ALA ASP SEQRES 30 A 487 VAL MET LEU VAL THR PRO LEU ARG ASP GLY MET ASN LEU SEQRES 31 A 487 VAL ALA LYS GLU TYR VAL ALA CYS ARG SER ASP LEU GLY SEQRES 32 A 487 GLY ALA LEU VAL LEU SER GLU PHE THR GLY ALA ALA ALA SEQRES 33 A 487 GLU LEU GLY GLN ALA TYR LEU VAL ASN PRO HIS ASN LEU SEQRES 34 A 487 ASP HIS VAL LYS ASP THR MET VAL ALA ALA LEU ASN GLN SEQRES 35 A 487 THR PRO GLU GLU GLY ARG ARG ARG MET ARG ALA LEU ARG SEQRES 36 A 487 ARG GLN VAL LEU ALA HIS ASP VAL ASP LEU TRP ALA ARG SEQRES 37 A 487 SER PHE LEU ASP ALA LEU ALA SER THR ARG THR GLY ASP SEQRES 38 A 487 ALA ASP ALA VAL PRO VAL HET GDG A 501 39 HET NHE A 502 13 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HETNAM GDG GDP-ALPHA-D-GLUCOSE HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN GDG GDP-ALPHA-D-GLUCOSE HETSYN NHE N-CYCLOHEXYLTAURINE; CHES HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GDG C16 H25 N5 O16 P2 FORMUL 3 NHE C8 H17 N O3 S FORMUL 4 EDO 6(C2 H6 O2) FORMUL 10 HOH *307(H2 O) HELIX 1 AA1 GLY A 38 LEU A 44 1 7 HELIX 2 AA2 LEU A 44 ARG A 49 1 6 HELIX 3 AA3 SER A 82 TYR A 90 1 9 HELIX 4 AA4 GLY A 92 THR A 97 1 6 HELIX 5 AA5 THR A 97 HIS A 103 1 7 HELIX 6 AA6 ASN A 112 ALA A 133 1 22 HELIX 7 AA7 TYR A 145 GLN A 148 5 4 HELIX 8 AA8 LEU A 149 ARG A 158 1 10 HELIX 9 AA9 PRO A 173 MET A 178 1 6 HELIX 10 AB1 TRP A 182 LEU A 191 1 10 HELIX 11 AB2 LEU A 200 LEU A 214 1 15 HELIX 12 AB3 ASP A 250 ARG A 259 1 10 HELIX 13 AB4 GLN A 260 LEU A 274 1 15 HELIX 14 AB5 ASP A 288 LYS A 291 5 4 HELIX 15 AB6 GLY A 292 GLU A 306 1 15 HELIX 16 AB7 VAL A 327 GLY A 349 1 23 HELIX 17 AB8 PRO A 364 ALA A 375 1 12 HELIX 18 AB9 ASN A 388 ARG A 398 1 11 HELIX 19 AC1 THR A 411 GLU A 416 5 6 HELIX 20 AC2 ASN A 427 ASN A 440 1 14 HELIX 21 AC3 THR A 442 HIS A 460 1 19 HELIX 22 AC4 ASP A 461 SER A 475 1 15 SHEET 1 AA110 ILE A 69 VAL A 70 0 SHEET 2 AA110 VAL A 75 PRO A 78 -1 O LEU A 76 N ILE A 69 SHEET 3 AA110 GLY A 53 TRP A 58 1 N TRP A 55 O TYR A 77 SHEET 4 AA110 SER A 10 ARG A 18 1 N VAL A 14 O ILE A 56 SHEET 5 AA110 ALA A 134 GLN A 143 1 O GLN A 143 N VAL A 15 SHEET 6 AA110 THR A 162 PHE A 166 1 O THR A 162 N VAL A 140 SHEET 7 AA110 LEU A 195 PHE A 198 1 O GLY A 197 N PHE A 165 SHEET 8 AA110 ARG A 238 ALA A 244 1 O LYS A 241 N VAL A 196 SHEET 9 AA110 GLY A 231 ILE A 235 -1 N VAL A 233 O VAL A 240 SHEET 10 AA110 ASN A 218 THR A 219 -1 N ASN A 218 O GLN A 234 SHEET 1 AA2 2 ILE A 21 ASP A 22 0 SHEET 2 AA2 2 LYS A 34 ARG A 35 -1 O LYS A 34 N ASP A 22 SHEET 1 AA3 6 VAL A 356 HIS A 360 0 SHEET 2 AA3 6 THR A 314 THR A 321 1 N ALA A 320 O LEU A 359 SHEET 3 AA3 6 ARG A 279 ARG A 286 1 N LEU A 281 O VAL A 317 SHEET 4 AA3 6 VAL A 377 VAL A 380 1 O LEU A 379 N LEU A 282 SHEET 5 AA3 6 LEU A 405 SER A 408 1 O VAL A 406 N MET A 378 SHEET 6 AA3 6 TYR A 421 VAL A 423 1 O TYR A 421 N LEU A 405 SITE 1 AC1 19 TRP A 99 HIS A 168 HIS A 199 ILE A 247 SITE 2 AC1 19 ARG A 286 LYS A 291 THR A 321 PRO A 362 SITE 3 AC1 19 VAL A 363 ARG A 365 LEU A 368 ASP A 385 SITE 4 AC1 19 GLY A 386 MET A 387 ASN A 388 LEU A 389 SITE 5 AC1 19 GLU A 393 HOH A 639 HOH A 713 SITE 1 AC2 9 GLU A 175 MET A 178 ARG A 183 ARG A 213 SITE 2 AC2 9 ARG A 384 GLU A 409 PHE A 410 EDO A 508 SITE 3 AC2 9 HOH A 708 SITE 1 AC3 5 GLN A 298 ALA A 301 ARG A 339 GLN A 340 SITE 2 AC3 5 HIS A 343 SITE 1 AC4 6 ALA A 258 ARG A 264 CYS A 397 SER A 399 SITE 2 AC4 6 ASP A 400 HOH A 617 SITE 1 AC5 4 HIS A 357 TYR A 358 LEU A 359 HOH A 601 SITE 1 AC6 8 ARG A 213 LEU A 214 GLU A 444 ARG A 447 SITE 2 AC6 8 ARG A 448 ARG A 451 HOH A 763 HOH A 789 SITE 1 AC7 2 GLU A 185 HOH A 796 SITE 1 AC8 8 LEU A 200 ARG A 213 GLU A 409 THR A 411 SITE 2 AC8 8 NHE A 502 HOH A 675 HOH A 708 HOH A 800 CRYST1 127.308 127.308 206.782 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007855 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007855 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004836 0.00000