HEADER TRANSFERASE 23-MAY-16 5K5C TITLE STRUCTURE OF MYCOBACTERIUM THERMORESISTIBILE TREHALOSE-6-PHOSPHATE TITLE 2 SYNTHASE IN A COMPLEX WITH TREHALOSE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM THERMORESISTIBILE; SOURCE 3 ORGANISM_TAXID: 1797; SOURCE 4 ATCC: 19527; SOURCE 5 GENE: RMCT_1906, OTSA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS OTSA TREHALOSE-6-PHOSPHATE SYNTHASE, TREHALOSE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.MENDES,N.VERMA,M.BLASZCZYK,T.L.BLUNDELL REVDAT 5 10-JAN-24 5K5C 1 HETSYN REVDAT 4 29-JUL-20 5K5C 1 COMPND REMARK HET HETNAM REVDAT 4 2 1 HETSYN FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 22-JAN-20 5K5C 1 JRNL REVDAT 2 13-SEP-17 5K5C 1 REMARK REVDAT 1 07-JUN-17 5K5C 0 JRNL AUTH V.MENDES,M.ACEBRON-GARCIA-DE-EULATE,N.VERMA,M.BLASZCZYK, JRNL AUTH 2 M.V.B.DIAS,T.L.BLUNDELL JRNL TITL MYCOBACTERIAL OTSA STRUCTURES UNVEIL SUBSTRATE PREFERENCE JRNL TITL 2 MECHANISM AND ALLOSTERIC REGULATION BY 2-OXOGLUTARATE AND JRNL TITL 3 2-PHOSPHOGLYCERATE. JRNL REF MBIO V. 10 2019 JRNL REFN ESSN 2150-7511 JRNL PMID 31772052 JRNL DOI 10.1128/MBIO.02272-19 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 72668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.5882 - 5.4719 1.00 2869 154 0.1442 0.1510 REMARK 3 2 5.4719 - 4.3447 1.00 2740 147 0.1147 0.1314 REMARK 3 3 4.3447 - 3.7959 1.00 2731 124 0.1149 0.1317 REMARK 3 4 3.7959 - 3.4490 1.00 2689 140 0.1337 0.1623 REMARK 3 5 3.4490 - 3.2019 1.00 2687 131 0.1564 0.1744 REMARK 3 6 3.2019 - 3.0132 1.00 2685 122 0.1641 0.1997 REMARK 3 7 3.0132 - 2.8623 1.00 2657 135 0.1641 0.1853 REMARK 3 8 2.8623 - 2.7378 1.00 2685 137 0.1692 0.2405 REMARK 3 9 2.7378 - 2.6324 1.00 2638 154 0.1633 0.1914 REMARK 3 10 2.6324 - 2.5416 1.00 2637 134 0.1599 0.1923 REMARK 3 11 2.5416 - 2.4621 1.00 2663 140 0.1593 0.1844 REMARK 3 12 2.4621 - 2.3917 1.00 2641 142 0.1556 0.1839 REMARK 3 13 2.3917 - 2.3288 1.00 2637 135 0.1544 0.1720 REMARK 3 14 2.3288 - 2.2720 1.00 2645 134 0.1432 0.1822 REMARK 3 15 2.2720 - 2.2203 1.00 2639 134 0.1472 0.1894 REMARK 3 16 2.2203 - 2.1731 1.00 2599 154 0.1525 0.1664 REMARK 3 17 2.1731 - 2.1296 1.00 2665 119 0.1531 0.1841 REMARK 3 18 2.1296 - 2.0894 1.00 2610 153 0.1632 0.1855 REMARK 3 19 2.0894 - 2.0521 1.00 2605 148 0.1764 0.1907 REMARK 3 20 2.0521 - 2.0173 1.00 2620 144 0.1814 0.2010 REMARK 3 21 2.0173 - 1.9848 1.00 2637 150 0.1879 0.2032 REMARK 3 22 1.9848 - 1.9542 1.00 2626 112 0.2039 0.2532 REMARK 3 23 1.9542 - 1.9255 1.00 2608 148 0.2160 0.2381 REMARK 3 24 1.9255 - 1.8984 1.00 2599 135 0.2322 0.2652 REMARK 3 25 1.8984 - 1.8727 1.00 2626 131 0.2516 0.2867 REMARK 3 26 1.8727 - 1.8484 1.00 2635 138 0.2909 0.3187 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3864 REMARK 3 ANGLE : 1.028 5256 REMARK 3 CHIRALITY : 0.043 586 REMARK 3 PLANARITY : 0.004 684 REMARK 3 DIHEDRAL : 14.022 1442 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 155.3639 122.9399 44.6332 REMARK 3 T TENSOR REMARK 3 T11: 0.2571 T22: 0.4993 REMARK 3 T33: 0.2950 T12: 0.1364 REMARK 3 T13: -0.0227 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 1.9774 L22: 1.3477 REMARK 3 L33: 1.9605 L12: -0.0726 REMARK 3 L13: 0.3983 L23: 0.2823 REMARK 3 S TENSOR REMARK 3 S11: -0.1358 S12: 0.0604 S13: 0.2777 REMARK 3 S21: -0.1115 S22: -0.0086 S23: 0.2667 REMARK 3 S31: -0.3796 S32: -0.7931 S33: 0.1027 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): 173.2448 113.5666 29.0699 REMARK 3 T TENSOR REMARK 3 T11: 0.2084 T22: 0.1772 REMARK 3 T33: 0.1990 T12: 0.0073 REMARK 3 T13: -0.0079 T23: -0.0233 REMARK 3 L TENSOR REMARK 3 L11: 1.1506 L22: 0.8513 REMARK 3 L33: 1.8696 L12: 0.2703 REMARK 3 L13: -0.3846 L23: -0.1998 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: 0.0468 S13: 0.0593 REMARK 3 S21: -0.0828 S22: 0.0046 S23: 0.0606 REMARK 3 S31: 0.0274 S32: -0.3318 S33: 0.0158 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K5C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221701. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 10 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96862 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.2.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72774 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.848 REMARK 200 RESOLUTION RANGE LOW (A) : 103.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 0.80000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.3 REMARK 200 STARTING MODEL: 5JIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M CHES PH 10 0.7M SODIUM POTASSIUM REMARK 280 TARTRATE 10% V/V ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.65900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 63.65900 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.69350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 63.65900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.84675 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 63.65900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 155.54025 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 63.65900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 155.54025 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.65900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.84675 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 63.65900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 63.65900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 103.69350 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 63.65900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 63.65900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 103.69350 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 63.65900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 155.54025 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 63.65900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 51.84675 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 63.65900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 51.84675 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 63.65900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 155.54025 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 63.65900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 63.65900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 103.69350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 63.65900 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 -63.65900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 103.69350 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 381.95400 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 254.63600 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 318.29500 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 318.29500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 103.69350 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 886 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 942 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 ASP A 6 REMARK 465 SER A 7 REMARK 465 GLU A 24 REMARK 465 ARG A 25 REMARK 465 ALA A 26 REMARK 465 PRO A 27 REMARK 465 ASP A 28 REMARK 465 GLY A 29 REMARK 465 THR A 30 REMARK 465 THR A 31 REMARK 465 SER A 32 REMARK 465 THR A 478 REMARK 465 GLY A 479 REMARK 465 ASP A 480 REMARK 465 ALA A 481 REMARK 465 ASP A 482 REMARK 465 ALA A 483 REMARK 465 VAL A 484 REMARK 465 PRO A 485 REMARK 465 VAL A 486 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 9 CG OD1 OD2 REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 50 CD NE CZ NH1 NH2 REMARK 470 ARG A 80 NE CZ NH1 NH2 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 325 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 90 -64.82 -98.10 REMARK 500 THR A 97 -65.22 -109.94 REMARK 500 HIS A 103 48.75 -98.73 REMARK 500 VAL A 105 49.00 36.26 REMARK 500 ASP A 144 178.82 78.85 REMARK 500 HIS A 353 85.17 -152.45 REMARK 500 MET A 387 -62.93 -132.62 REMARK 500 ASN A 388 99.86 82.19 REMARK 500 PHE A 410 32.22 -91.49 REMARK 500 LEU A 417 48.59 -106.87 REMARK 500 REMARK 500 REMARK: NULL DBREF1 5K5C A 1 486 UNP A0A117IMA6_MYCTH DBREF2 5K5C A A0A117IMA6 1 486 SEQADV 5K5C SER A 0 UNP A0A117IMA EXPRESSION TAG SEQRES 1 A 487 SER MET ALA ASP ARG GLY ASP SER GLY ASP SER ASP PHE SEQRES 2 A 487 VAL VAL VAL ALA ASN ARG LEU PRO ILE ASP LEU GLU ARG SEQRES 3 A 487 ALA PRO ASP GLY THR THR SER TRP LYS ARG SER PRO GLY SEQRES 4 A 487 GLY LEU VAL THR ALA LEU GLU PRO LEU LEU ARG ARG ARG SEQRES 5 A 487 ARG GLY ALA TRP ILE GLY TRP PRO GLY ILE PRO ASP SER SEQRES 6 A 487 ASP GLU ASP PRO ILE VAL ASP GLY ASP LEU VAL LEU TYR SEQRES 7 A 487 PRO VAL ARG LEU SER ALA ASP ASP VAL ALA GLN TYR TYR SEQRES 8 A 487 GLU GLY PHE SER ASN ALA THR LEU TRP PRO LEU TYR HIS SEQRES 9 A 487 ASP VAL ILE VAL LYS PRO ILE TYR ASN ARG GLN TRP TRP SEQRES 10 A 487 GLU ARG TYR VAL GLU VAL ASN ARG ARG PHE ALA GLU ALA SEQRES 11 A 487 THR SER ARG ALA ALA ALA ARG GLY ALA THR VAL TRP VAL SEQRES 12 A 487 GLN ASP TYR GLN LEU GLN LEU VAL PRO LYS MET LEU ARG SEQRES 13 A 487 GLU LEU ARG PRO ASP LEU THR ILE GLY PHE PHE LEU HIS SEQRES 14 A 487 ILE PRO PHE PRO PRO VAL GLU LEU PHE MET GLN LEU PRO SEQRES 15 A 487 TRP ARG THR GLU ILE THR ASP GLY LEU LEU GLY ALA ASP SEQRES 16 A 487 LEU VAL GLY PHE HIS LEU PRO GLY GLY ALA GLN ASN PHE SEQRES 17 A 487 LEU PHE LEU ALA ARG ARG LEU VAL GLY ALA ASN THR SER SEQRES 18 A 487 ARG ALA SER VAL GLY VAL ARG SER LYS PHE GLY GLU VAL SEQRES 19 A 487 GLN ILE GLY SER ARG THR VAL LYS VAL GLY ALA PHE PRO SEQRES 20 A 487 ILE SER ILE ASP SER ALA ASP LEU ASP ARG GLN ALA ARG SEQRES 21 A 487 GLN ARG SER ILE ARG GLN ARG ALA ARG GLN ILE ARG ALA SEQRES 22 A 487 GLU LEU GLY ASN PRO ARG ARG ILE LEU LEU GLY VAL ASP SEQRES 23 A 487 ARG LEU ASP TYR THR LYS GLY ILE ASP VAL ARG LEU GLN SEQRES 24 A 487 ALA PHE ALA GLU LEU LEU ALA GLU GLY ARG VAL ASN ARG SEQRES 25 A 487 GLU ASP THR VAL PHE VAL GLN LEU ALA THR PRO SER ARG SEQRES 26 A 487 GLU ARG VAL GLU ALA TYR ARG LEU LEU ARG ASP ASP ILE SEQRES 27 A 487 GLU ARG GLN VAL GLY HIS ILE ASN GLY GLU TYR GLY GLU SEQRES 28 A 487 VAL GLY HIS PRO VAL VAL HIS TYR LEU HIS ARG PRO VAL SEQRES 29 A 487 PRO ARG GLU GLU LEU ILE ALA PHE PHE VAL ALA ALA ASP SEQRES 30 A 487 VAL MET LEU VAL THR PRO LEU ARG ASP GLY MET ASN LEU SEQRES 31 A 487 VAL ALA LYS GLU TYR VAL ALA CYS ARG SER ASP LEU GLY SEQRES 32 A 487 GLY ALA LEU VAL LEU SER GLU PHE THR GLY ALA ALA ALA SEQRES 33 A 487 GLU LEU GLY GLN ALA TYR LEU VAL ASN PRO HIS ASN LEU SEQRES 34 A 487 ASP HIS VAL LYS ASP THR MET VAL ALA ALA LEU ASN GLN SEQRES 35 A 487 THR PRO GLU GLU GLY ARG ARG ARG MET ARG ALA LEU ARG SEQRES 36 A 487 ARG GLN VAL LEU ALA HIS ASP VAL ASP LEU TRP ALA ARG SEQRES 37 A 487 SER PHE LEU ASP ALA LEU ALA SER THR ARG THR GLY ASP SEQRES 38 A 487 ALA ASP ALA VAL PRO VAL HET GLC B 1 11 HET GLC B 2 12 HET NHE A 502 13 HET NHE A 503 13 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM NHE 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID HETNAM EDO 1,2-ETHANEDIOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN NHE N-CYCLOHEXYLTAURINE; CHES HETSYN EDO ETHYLENE GLYCOL FORMUL 2 GLC 2(C6 H12 O6) FORMUL 3 NHE 2(C8 H17 N O3 S) FORMUL 5 EDO 8(C2 H6 O2) FORMUL 13 HOH *371(H2 O) HELIX 1 AA1 GLY A 38 LEU A 44 1 7 HELIX 2 AA2 LEU A 44 ARG A 49 1 6 HELIX 3 AA3 SER A 82 TYR A 90 1 9 HELIX 4 AA4 GLY A 92 THR A 97 1 6 HELIX 5 AA5 THR A 97 HIS A 103 1 7 HELIX 6 AA6 ASN A 112 ALA A 133 1 22 HELIX 7 AA7 TYR A 145 GLN A 148 5 4 HELIX 8 AA8 LEU A 149 ARG A 158 1 10 HELIX 9 AA9 PRO A 173 MET A 178 1 6 HELIX 10 AB1 TRP A 182 LEU A 191 1 10 HELIX 11 AB2 LEU A 200 LEU A 214 1 15 HELIX 12 AB3 ASP A 250 ARG A 259 1 10 HELIX 13 AB4 GLN A 260 LEU A 274 1 15 HELIX 14 AB5 GLY A 292 GLU A 306 1 15 HELIX 15 AB6 VAL A 327 GLY A 349 1 23 HELIX 16 AB7 PRO A 364 ALA A 375 1 12 HELIX 17 AB8 ASN A 388 ARG A 398 1 11 HELIX 18 AB9 THR A 411 GLU A 416 5 6 HELIX 19 AC1 ASN A 427 GLN A 441 1 15 HELIX 20 AC2 THR A 442 HIS A 460 1 19 HELIX 21 AC3 ASP A 461 SER A 475 1 15 SHEET 1 AA110 ILE A 69 VAL A 70 0 SHEET 2 AA110 VAL A 75 PRO A 78 -1 O LEU A 76 N ILE A 69 SHEET 3 AA110 GLY A 53 TRP A 58 1 N TRP A 55 O TYR A 77 SHEET 4 AA110 SER A 10 ARG A 18 1 N VAL A 14 O ILE A 56 SHEET 5 AA110 ALA A 134 GLN A 143 1 O GLN A 143 N VAL A 15 SHEET 6 AA110 THR A 162 PHE A 166 1 O GLY A 164 N VAL A 140 SHEET 7 AA110 LEU A 195 PHE A 198 1 O GLY A 197 N PHE A 165 SHEET 8 AA110 ARG A 238 ALA A 244 1 O LYS A 241 N VAL A 196 SHEET 9 AA110 GLY A 231 ILE A 235 -1 N VAL A 233 O VAL A 240 SHEET 10 AA110 ASN A 218 THR A 219 -1 N ASN A 218 O GLN A 234 SHEET 1 AA2 2 ILE A 21 ASP A 22 0 SHEET 2 AA2 2 LYS A 34 ARG A 35 -1 O LYS A 34 N ASP A 22 SHEET 1 AA3 6 VAL A 356 HIS A 360 0 SHEET 2 AA3 6 THR A 314 THR A 321 1 N GLN A 318 O HIS A 357 SHEET 3 AA3 6 ARG A 279 ARG A 286 1 N GLY A 283 O LEU A 319 SHEET 4 AA3 6 VAL A 377 VAL A 380 1 O LEU A 379 N LEU A 282 SHEET 5 AA3 6 LEU A 405 SER A 408 1 O VAL A 406 N MET A 378 SHEET 6 AA3 6 TYR A 421 VAL A 423 1 O TYR A 421 N LEU A 405 LINK C1 GLC B 1 O1 GLC B 2 1555 1555 1.43 CRYST1 127.318 127.318 207.387 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007854 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007854 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004822 0.00000