HEADER HYDROLASE 23-MAY-16 5K5D TITLE STRUCTURE OF THE C2221 FORM OF PNOB8-LIKE PARB-N DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PARB DOMAIN PROTEIN NUCLEASE; COMPND 3 CHAIN: B, A, C; COMPND 4 FRAGMENT: UNP RESIDUES 1-298; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 555311; SOURCE 4 STRAIN: 98/2; SOURCE 5 GENE: SSOL_1539; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PARB-N, PNOB8, PARTITION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHUMACHER REVDAT 3 15-NOV-23 5K5D 1 REMARK REVDAT 2 27-SEP-23 5K5D 1 REMARK REVDAT 1 15-JUN-16 5K5D 0 JRNL AUTH M.A.SCHUMACHER,N.K.TONTHAT,J.LEE,F.A.RODRIGUEZ-CASTNEDA, JRNL AUTH 2 N.B.CHINNAM,A.K.KALLIOMAA-SANFORD,I.W.NG,M.T.BARGE,P.L.SHAW, JRNL AUTH 3 D.BARILLA JRNL TITL STRUCTURES OF ARCHAEAL DNA SEGREGATION MACHINERY REVEAL JRNL TITL 2 BACTERIAL AND EUKARYOTIC LINKAGES. JRNL REF SCIENCE V. 349 1120 2015 JRNL REFN ESSN 1095-9203 JRNL PMID 26339031 JRNL DOI 10.1126/SCIENCE.AAA9046 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.6.4_486 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 38446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1151 - 5.2758 0.94 3780 208 0.2087 0.2385 REMARK 3 2 5.2758 - 4.1885 0.97 3729 204 0.1818 0.2201 REMARK 3 3 4.1885 - 3.6593 0.98 3750 206 0.1995 0.2265 REMARK 3 4 3.6593 - 3.3248 0.98 3719 204 0.2258 0.2818 REMARK 3 5 3.3248 - 3.0866 0.99 3723 205 0.2343 0.2710 REMARK 3 6 3.0866 - 2.9046 0.99 3748 205 0.2380 0.3084 REMARK 3 7 2.9046 - 2.7592 0.99 3729 205 0.2671 0.3237 REMARK 3 8 2.7592 - 2.6391 0.99 3731 204 0.2914 0.3439 REMARK 3 9 2.6391 - 2.5375 0.94 3505 192 0.3256 0.3488 REMARK 3 10 2.5375 - 2.4499 0.80 3032 167 0.3497 0.4159 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 61.84 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.47020 REMARK 3 B22 (A**2) : -6.51230 REMARK 3 B33 (A**2) : 4.04200 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6379 REMARK 3 ANGLE : 0.629 8554 REMARK 3 CHIRALITY : 0.043 957 REMARK 3 PLANARITY : 0.002 1092 REMARK 3 DIHEDRAL : 16.042 2561 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K5D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38446 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 46.107 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.39000 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5K5A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350,, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 153.60000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 153.60000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.51500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.35000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.51500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.35000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 153.60000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.51500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.35000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 153.60000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.51500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.35000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 GLU B 132 REMARK 465 SER B 133 REMARK 465 LYS B 134 REMARK 465 ILE B 135 REMARK 465 VAL B 136 REMARK 465 SER B 137 REMARK 465 HIS B 138 REMARK 465 ALA B 139 REMARK 465 THR B 140 REMARK 465 GLN B 141 REMARK 465 PHE B 142 REMARK 465 SER B 143 REMARK 465 ALA B 144 REMARK 465 THR B 145 REMARK 465 GLU B 146 REMARK 465 SER B 147 REMARK 465 LYS B 148 REMARK 465 GLN B 149 REMARK 465 ILE B 150 REMARK 465 LYS B 270 REMARK 465 GLN B 271 REMARK 465 TYR B 272 REMARK 465 THR B 273 REMARK 465 THR B 274 REMARK 465 GLU B 275 REMARK 465 ARG B 276 REMARK 465 ALA B 277 REMARK 465 ILE B 278 REMARK 465 SER B 279 REMARK 465 VAL B 280 REMARK 465 LYS B 281 REMARK 465 GLN B 282 REMARK 465 LYS B 283 REMARK 465 GLU B 284 REMARK 465 ALA B 285 REMARK 465 LEU B 286 REMARK 465 LYS B 287 REMARK 465 ARG B 288 REMARK 465 GLY B 289 REMARK 465 GLY B 290 REMARK 465 LYS B 291 REMARK 465 VAL B 292 REMARK 465 LYS B 293 REMARK 465 LYS B 294 REMARK 465 SER B 295 REMARK 465 SER B 296 REMARK 465 LYS B 297 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 GLU A 132 REMARK 465 SER A 133 REMARK 465 LYS A 134 REMARK 465 ILE A 135 REMARK 465 VAL A 136 REMARK 465 SER A 137 REMARK 465 HIS A 138 REMARK 465 ALA A 139 REMARK 465 THR A 140 REMARK 465 GLN A 141 REMARK 465 PHE A 142 REMARK 465 SER A 143 REMARK 465 ALA A 144 REMARK 465 THR A 145 REMARK 465 GLU A 146 REMARK 465 SER A 147 REMARK 465 LYS A 148 REMARK 465 LYS A 270 REMARK 465 GLN A 271 REMARK 465 TYR A 272 REMARK 465 THR A 273 REMARK 465 THR A 274 REMARK 465 GLU A 275 REMARK 465 ARG A 276 REMARK 465 ALA A 277 REMARK 465 ILE A 278 REMARK 465 SER A 279 REMARK 465 VAL A 280 REMARK 465 LYS A 281 REMARK 465 GLN A 282 REMARK 465 LYS A 283 REMARK 465 GLU A 284 REMARK 465 ALA A 285 REMARK 465 LEU A 286 REMARK 465 LYS A 287 REMARK 465 ARG A 288 REMARK 465 GLY A 289 REMARK 465 GLY A 290 REMARK 465 LYS A 291 REMARK 465 VAL A 292 REMARK 465 LYS A 293 REMARK 465 LYS A 294 REMARK 465 SER A 295 REMARK 465 SER A 296 REMARK 465 LYS A 297 REMARK 465 GLY C -2 REMARK 465 SER C -1 REMARK 465 HIS C 0 REMARK 465 PRO C 27 REMARK 465 SER C 28 REMARK 465 GLU C 132 REMARK 465 SER C 133 REMARK 465 LYS C 134 REMARK 465 ILE C 135 REMARK 465 VAL C 136 REMARK 465 SER C 137 REMARK 465 HIS C 138 REMARK 465 ALA C 139 REMARK 465 THR C 140 REMARK 465 GLN C 141 REMARK 465 PHE C 142 REMARK 465 SER C 143 REMARK 465 ALA C 144 REMARK 465 THR C 145 REMARK 465 GLU C 146 REMARK 465 SER C 147 REMARK 465 LYS C 148 REMARK 465 GLN C 149 REMARK 465 LYS C 270 REMARK 465 GLN C 271 REMARK 465 TYR C 272 REMARK 465 THR C 273 REMARK 465 THR C 274 REMARK 465 GLU C 275 REMARK 465 ARG C 276 REMARK 465 ALA C 277 REMARK 465 ILE C 278 REMARK 465 SER C 279 REMARK 465 VAL C 280 REMARK 465 LYS C 281 REMARK 465 GLN C 282 REMARK 465 LYS C 283 REMARK 465 GLU C 284 REMARK 465 ALA C 285 REMARK 465 LEU C 286 REMARK 465 LYS C 287 REMARK 465 ARG C 288 REMARK 465 GLY C 289 REMARK 465 GLY C 290 REMARK 465 LYS C 291 REMARK 465 VAL C 292 REMARK 465 LYS C 293 REMARK 465 LYS C 294 REMARK 465 SER C 295 REMARK 465 SER C 296 REMARK 465 LYS C 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MSE B 25 -74.13 -59.73 REMARK 500 SER B 43 -156.57 64.27 REMARK 500 ILE B 45 -64.36 -91.24 REMARK 500 ASN B 98 -37.21 -136.66 REMARK 500 ASP B 178 55.18 -148.02 REMARK 500 LYS B 179 38.47 -75.11 REMARK 500 GLU B 180 -0.46 -145.46 REMARK 500 ASN B 181 17.99 56.81 REMARK 500 SER A 43 -150.94 57.76 REMARK 500 ASP A 80 59.84 -90.10 REMARK 500 GLU A 86 54.29 -106.24 REMARK 500 ASN A 98 -33.61 -133.44 REMARK 500 LYS A 129 43.26 -107.86 REMARK 500 THR A 130 -52.55 -155.86 REMARK 500 ASP A 160 36.37 -78.66 REMARK 500 ASP A 161 -2.08 -148.61 REMARK 500 ASP A 178 63.66 -155.34 REMARK 500 THR C 2 -13.26 67.81 REMARK 500 ASN C 30 -70.13 -115.59 REMARK 500 ARG C 32 -73.06 -62.56 REMARK 500 SER C 43 -171.39 74.66 REMARK 500 ARG C 101 89.17 -69.59 REMARK 500 TYR C 211 -64.41 -135.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CIT C 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K5A RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 PROTEIN HAD DEGRADED WITHIN ITS C-TERMINAL DOMAIN DURING REMARK 999 CRYSTALLIZATION DBREF 5K5D B 1 297 UNP D0KSP7 D0KSP7_SULS9 1 298 DBREF 5K5D A 1 297 UNP D0KSP7 D0KSP7_SULS9 1 298 DBREF 5K5D C 1 297 UNP D0KSP7 D0KSP7_SULS9 1 298 SEQADV 5K5D GLY B -2 UNP D0KSP7 EXPRESSION TAG SEQADV 5K5D SER B -1 UNP D0KSP7 EXPRESSION TAG SEQADV 5K5D HIS B 0 UNP D0KSP7 EXPRESSION TAG SEQADV 5K5D MSE B 25 UNP D0KSP7 LEU 25 ENGINEERED MUTATION SEQADV 5K5D MSE B 123 UNP D0KSP7 ILE 123 ENGINEERED MUTATION SEQADV 5K5D MSE B 228 UNP D0KSP7 LEU 228 ENGINEERED MUTATION SEQADV 5K5D MSE B 264 UNP D0KSP7 LEU 264 ENGINEERED MUTATION SEQADV 5K5D B UNP D0KSP7 GLU 280 DELETION SEQADV 5K5D GLY A -2 UNP D0KSP7 EXPRESSION TAG SEQADV 5K5D SER A -1 UNP D0KSP7 EXPRESSION TAG SEQADV 5K5D HIS A 0 UNP D0KSP7 EXPRESSION TAG SEQADV 5K5D MSE A 25 UNP D0KSP7 LEU 25 ENGINEERED MUTATION SEQADV 5K5D MSE A 123 UNP D0KSP7 ILE 123 ENGINEERED MUTATION SEQADV 5K5D MSE A 228 UNP D0KSP7 LEU 228 ENGINEERED MUTATION SEQADV 5K5D MSE A 264 UNP D0KSP7 LEU 264 ENGINEERED MUTATION SEQADV 5K5D A UNP D0KSP7 GLU 280 DELETION SEQADV 5K5D GLY C -2 UNP D0KSP7 EXPRESSION TAG SEQADV 5K5D SER C -1 UNP D0KSP7 EXPRESSION TAG SEQADV 5K5D HIS C 0 UNP D0KSP7 EXPRESSION TAG SEQADV 5K5D MSE C 25 UNP D0KSP7 LEU 25 ENGINEERED MUTATION SEQADV 5K5D MSE C 123 UNP D0KSP7 ILE 123 ENGINEERED MUTATION SEQADV 5K5D MSE C 228 UNP D0KSP7 LEU 228 ENGINEERED MUTATION SEQADV 5K5D MSE C 264 UNP D0KSP7 LEU 264 ENGINEERED MUTATION SEQADV 5K5D C UNP D0KSP7 GLU 280 DELETION SEQRES 1 B 300 GLY SER HIS MSE THR GLU LEU THR TYR THR GLU GLU VAL SEQRES 2 B 300 VAL SER ILE GLU LYS LEU LYS GLU ASP ASP GLU PHE LYS SEQRES 3 B 300 THR MSE VAL PRO SER ASN ASN SER ARG GLU ASP LEU GLU SEQRES 4 B 300 LYS SER LEU ARG GLU LYS SER GLN ILE PHE PRO LEU ILE SEQRES 5 B 300 ALA ASP ARG ASN TYR VAL LEU ILE ASP GLY TYR THR ARG SEQRES 6 B 300 LEU ASP ILE MSE LYS LYS LEU GLY PHE LYS GLU VAL LYS SEQRES 7 B 300 ILE LEU LYS TYR ASP PHE ASP SER GLN GLN GLU ARG ASP SEQRES 8 B 300 LYS ALA TYR GLU LEU ILE TRP THR PHE ASN GLY VAL ARG SEQRES 9 B 300 ARG GLN LEU ASP LYS ASN GLU ARG LEU ALA LEU PHE GLN SEQRES 10 B 300 LYS ILE ALA ASP ARG ILE ALA LYS MSE GLN ALA SER LYS SEQRES 11 B 300 ASN LYS THR GLU GLU SER LYS ILE VAL SER HIS ALA THR SEQRES 12 B 300 GLN PHE SER ALA THR GLU SER LYS GLN ILE GLU GLU ASN SEQRES 13 B 300 GLU GLU PHE VAL THR LEU ASP ASP GLY THR THR ILE SER SEQRES 14 B 300 ALA LEU GLU TYR GLU ARG ILE LEU LYS GLU LEU ASP LYS SEQRES 15 B 300 GLU ASN LYS ALA LEU SER GLU SER ASP LYS ARG LYS MSE SEQRES 16 B 300 ALA ILE LEU ARG ILE ASN THR PRO TRP LEU LEU LYS TYR SEQRES 17 B 300 VAL THR ASP GLN LYS TYR LYS VAL PRO LEU ASP GLN ALA SEQRES 18 B 300 PHE ARG ILE TYR THR ARG VAL LYS ASP MSE GLY ILE LEU SEQRES 19 B 300 ASP LYS LEU LYS ASP LEU ALA PRO ALA LEU ARG ASP PRO SEQRES 20 B 300 LEU ILE THR THR ARG GLU GLY ARG LYS ILE ILE LEU ASN SEQRES 21 B 300 ASP GLU TYR ARG ASP LEU MSE GLU LYS ILE ILE SER LYS SEQRES 22 B 300 GLN TYR THR THR GLU ARG ALA ILE SER VAL LYS GLN LYS SEQRES 23 B 300 GLU ALA LEU LYS ARG GLY GLY LYS VAL LYS LYS SER SER SEQRES 24 B 300 LYS SEQRES 1 A 300 GLY SER HIS MSE THR GLU LEU THR TYR THR GLU GLU VAL SEQRES 2 A 300 VAL SER ILE GLU LYS LEU LYS GLU ASP ASP GLU PHE LYS SEQRES 3 A 300 THR MSE VAL PRO SER ASN ASN SER ARG GLU ASP LEU GLU SEQRES 4 A 300 LYS SER LEU ARG GLU LYS SER GLN ILE PHE PRO LEU ILE SEQRES 5 A 300 ALA ASP ARG ASN TYR VAL LEU ILE ASP GLY TYR THR ARG SEQRES 6 A 300 LEU ASP ILE MSE LYS LYS LEU GLY PHE LYS GLU VAL LYS SEQRES 7 A 300 ILE LEU LYS TYR ASP PHE ASP SER GLN GLN GLU ARG ASP SEQRES 8 A 300 LYS ALA TYR GLU LEU ILE TRP THR PHE ASN GLY VAL ARG SEQRES 9 A 300 ARG GLN LEU ASP LYS ASN GLU ARG LEU ALA LEU PHE GLN SEQRES 10 A 300 LYS ILE ALA ASP ARG ILE ALA LYS MSE GLN ALA SER LYS SEQRES 11 A 300 ASN LYS THR GLU GLU SER LYS ILE VAL SER HIS ALA THR SEQRES 12 A 300 GLN PHE SER ALA THR GLU SER LYS GLN ILE GLU GLU ASN SEQRES 13 A 300 GLU GLU PHE VAL THR LEU ASP ASP GLY THR THR ILE SER SEQRES 14 A 300 ALA LEU GLU TYR GLU ARG ILE LEU LYS GLU LEU ASP LYS SEQRES 15 A 300 GLU ASN LYS ALA LEU SER GLU SER ASP LYS ARG LYS MSE SEQRES 16 A 300 ALA ILE LEU ARG ILE ASN THR PRO TRP LEU LEU LYS TYR SEQRES 17 A 300 VAL THR ASP GLN LYS TYR LYS VAL PRO LEU ASP GLN ALA SEQRES 18 A 300 PHE ARG ILE TYR THR ARG VAL LYS ASP MSE GLY ILE LEU SEQRES 19 A 300 ASP LYS LEU LYS ASP LEU ALA PRO ALA LEU ARG ASP PRO SEQRES 20 A 300 LEU ILE THR THR ARG GLU GLY ARG LYS ILE ILE LEU ASN SEQRES 21 A 300 ASP GLU TYR ARG ASP LEU MSE GLU LYS ILE ILE SER LYS SEQRES 22 A 300 GLN TYR THR THR GLU ARG ALA ILE SER VAL LYS GLN LYS SEQRES 23 A 300 GLU ALA LEU LYS ARG GLY GLY LYS VAL LYS LYS SER SER SEQRES 24 A 300 LYS SEQRES 1 C 300 GLY SER HIS MSE THR GLU LEU THR TYR THR GLU GLU VAL SEQRES 2 C 300 VAL SER ILE GLU LYS LEU LYS GLU ASP ASP GLU PHE LYS SEQRES 3 C 300 THR MSE VAL PRO SER ASN ASN SER ARG GLU ASP LEU GLU SEQRES 4 C 300 LYS SER LEU ARG GLU LYS SER GLN ILE PHE PRO LEU ILE SEQRES 5 C 300 ALA ASP ARG ASN TYR VAL LEU ILE ASP GLY TYR THR ARG SEQRES 6 C 300 LEU ASP ILE MSE LYS LYS LEU GLY PHE LYS GLU VAL LYS SEQRES 7 C 300 ILE LEU LYS TYR ASP PHE ASP SER GLN GLN GLU ARG ASP SEQRES 8 C 300 LYS ALA TYR GLU LEU ILE TRP THR PHE ASN GLY VAL ARG SEQRES 9 C 300 ARG GLN LEU ASP LYS ASN GLU ARG LEU ALA LEU PHE GLN SEQRES 10 C 300 LYS ILE ALA ASP ARG ILE ALA LYS MSE GLN ALA SER LYS SEQRES 11 C 300 ASN LYS THR GLU GLU SER LYS ILE VAL SER HIS ALA THR SEQRES 12 C 300 GLN PHE SER ALA THR GLU SER LYS GLN ILE GLU GLU ASN SEQRES 13 C 300 GLU GLU PHE VAL THR LEU ASP ASP GLY THR THR ILE SER SEQRES 14 C 300 ALA LEU GLU TYR GLU ARG ILE LEU LYS GLU LEU ASP LYS SEQRES 15 C 300 GLU ASN LYS ALA LEU SER GLU SER ASP LYS ARG LYS MSE SEQRES 16 C 300 ALA ILE LEU ARG ILE ASN THR PRO TRP LEU LEU LYS TYR SEQRES 17 C 300 VAL THR ASP GLN LYS TYR LYS VAL PRO LEU ASP GLN ALA SEQRES 18 C 300 PHE ARG ILE TYR THR ARG VAL LYS ASP MSE GLY ILE LEU SEQRES 19 C 300 ASP LYS LEU LYS ASP LEU ALA PRO ALA LEU ARG ASP PRO SEQRES 20 C 300 LEU ILE THR THR ARG GLU GLY ARG LYS ILE ILE LEU ASN SEQRES 21 C 300 ASP GLU TYR ARG ASP LEU MSE GLU LYS ILE ILE SER LYS SEQRES 22 C 300 GLN TYR THR THR GLU ARG ALA ILE SER VAL LYS GLN LYS SEQRES 23 C 300 GLU ALA LEU LYS ARG GLY GLY LYS VAL LYS LYS SER SER SEQRES 24 C 300 LYS MODRES 5K5D MSE B 1 MET MODIFIED RESIDUE MODRES 5K5D MSE B 66 MET MODIFIED RESIDUE MODRES 5K5D MSE B 192 MET MODIFIED RESIDUE MODRES 5K5D MSE A 1 MET MODIFIED RESIDUE MODRES 5K5D MSE A 66 MET MODIFIED RESIDUE MODRES 5K5D MSE A 192 MET MODIFIED RESIDUE MODRES 5K5D MSE C 1 MET MODIFIED RESIDUE MODRES 5K5D MSE C 66 MET MODIFIED RESIDUE MODRES 5K5D MSE C 192 MET MODIFIED RESIDUE HET MSE B 1 8 HET MSE B 25 8 HET MSE B 66 8 HET MSE B 123 8 HET MSE B 192 8 HET MSE B 228 8 HET MSE B 264 8 HET MSE A 1 8 HET MSE A 25 8 HET MSE A 66 8 HET MSE A 123 8 HET MSE A 192 8 HET MSE A 228 8 HET MSE A 264 8 HET MSE C 1 8 HET MSE C 25 8 HET MSE C 66 8 HET MSE C 123 8 HET MSE C 192 8 HET MSE C 228 8 HET MSE C 264 8 HET CIT B 301 13 HET CIT A 301 13 HET CIT C 301 13 HET CIT C 302 13 HETNAM MSE SELENOMETHIONINE HETNAM CIT CITRIC ACID FORMUL 1 MSE 21(C5 H11 N O2 SE) FORMUL 4 CIT 4(C6 H8 O7) FORMUL 8 HOH *103(H2 O) HELIX 1 AA1 GLU B 14 LEU B 16 5 3 HELIX 2 AA2 ASP B 19 MSE B 25 1 7 HELIX 3 AA3 SER B 31 SER B 43 1 13 HELIX 4 AA4 GLY B 59 LEU B 69 1 11 HELIX 5 AA5 GLU B 86 PHE B 97 1 12 HELIX 6 AA6 ASP B 105 LYS B 127 1 23 HELIX 7 AA7 ALA B 167 ASP B 178 1 12 HELIX 8 AA8 SER B 185 THR B 199 1 15 HELIX 9 AA9 THR B 199 ASP B 208 1 10 HELIX 10 AB1 PRO B 214 MSE B 228 1 15 HELIX 11 AB2 ILE B 230 ASP B 236 1 7 HELIX 12 AB3 ALA B 238 THR B 248 1 11 HELIX 13 AB4 THR B 248 ASN B 257 1 10 HELIX 14 AB5 TYR B 260 SER B 269 1 10 HELIX 15 AB6 GLU A 14 LEU A 16 5 3 HELIX 16 AB7 ASP A 19 THR A 24 1 6 HELIX 17 AB8 GLU A 33 SER A 43 1 11 HELIX 18 AB9 GLY A 59 LEU A 69 1 11 HELIX 19 AC1 GLU A 86 PHE A 97 1 12 HELIX 20 AC2 ASP A 105 SER A 126 1 22 HELIX 21 AC3 ILE A 150 GLU A 154 5 5 HELIX 22 AC4 ALA A 167 ASP A 178 1 12 HELIX 23 AC5 SER A 185 THR A 199 1 15 HELIX 24 AC6 THR A 199 ASP A 208 1 10 HELIX 25 AC7 PRO A 214 MSE A 228 1 15 HELIX 26 AC8 ILE A 230 ASP A 236 1 7 HELIX 27 AC9 ALA A 238 THR A 248 1 11 HELIX 28 AD1 THR A 248 ASN A 257 1 10 HELIX 29 AD2 TYR A 260 SER A 269 1 10 HELIX 30 AD3 ASP C 19 THR C 24 1 6 HELIX 31 AD4 SER C 31 SER C 43 1 13 HELIX 32 AD5 GLY C 59 LYS C 68 1 10 HELIX 33 AD6 GLU C 86 GLY C 99 1 14 HELIX 34 AD7 ASP C 105 LYS C 127 1 23 HELIX 35 AD8 ALA C 167 ASP C 178 1 12 HELIX 36 AD9 SER C 185 THR C 199 1 15 HELIX 37 AE1 THR C 199 ASP C 208 1 10 HELIX 38 AE2 PRO C 214 MSE C 228 1 15 HELIX 39 AE3 ILE C 230 ASP C 236 1 7 HELIX 40 AE4 ALA C 238 THR C 248 1 11 HELIX 41 AE5 THR C 248 ASN C 257 1 10 HELIX 42 AE6 TYR C 260 SER C 269 1 10 SHEET 1 AA1 5 TYR B 6 SER B 12 0 SHEET 2 AA1 5 GLU B 73 TYR B 79 -1 O LYS B 78 N THR B 7 SHEET 3 AA1 5 LEU B 48 ALA B 50 1 N LEU B 48 O LYS B 75 SHEET 4 AA1 5 VAL B 55 ASP B 58 -1 O ILE B 57 N ILE B 49 SHEET 5 AA1 5 LYS B 17 GLU B 18 1 N LYS B 17 O LEU B 56 SHEET 1 AA2 6 THR B 164 SER B 166 0 SHEET 2 AA2 6 GLU B 155 THR B 158 -1 N VAL B 157 O ILE B 165 SHEET 3 AA2 6 LEU A 4 SER A 12 -1 O TYR A 6 N PHE B 156 SHEET 4 AA2 6 GLU A 73 TYR A 79 -1 O ILE A 76 N GLU A 9 SHEET 5 AA2 6 LEU A 48 ALA A 50 1 N LEU A 48 O LEU A 77 SHEET 6 AA2 6 LEU A 56 ASP A 58 -1 O ILE A 57 N ILE A 49 SHEET 1 AA3 2 PHE A 156 THR A 158 0 SHEET 2 AA3 2 THR A 164 SER A 166 -1 O ILE A 165 N VAL A 157 SHEET 1 AA4 4 TYR C 6 SER C 12 0 SHEET 2 AA4 4 GLU C 73 TYR C 79 -1 O LYS C 78 N THR C 7 SHEET 3 AA4 4 LEU C 48 ALA C 50 1 N ALA C 50 O TYR C 79 SHEET 4 AA4 4 LEU C 56 ASP C 58 -1 O ILE C 57 N ILE C 49 SHEET 1 AA5 2 PHE C 156 THR C 158 0 SHEET 2 AA5 2 THR C 164 SER C 166 -1 O ILE C 165 N VAL C 157 LINK C MSE B 1 N THR B 2 1555 1555 1.33 LINK C THR B 24 N MSE B 25 1555 1555 1.33 LINK C MSE B 25 N VAL B 26 1555 1555 1.33 LINK C ILE B 65 N MSE B 66 1555 1555 1.33 LINK C MSE B 66 N LYS B 67 1555 1555 1.33 LINK C LYS B 122 N MSE B 123 1555 1555 1.33 LINK C MSE B 123 N GLN B 124 1555 1555 1.33 LINK C LYS B 191 N MSE B 192 1555 1555 1.33 LINK C MSE B 192 N ALA B 193 1555 1555 1.33 LINK C ASP B 227 N MSE B 228 1555 1555 1.33 LINK C MSE B 228 N GLY B 229 1555 1555 1.33 LINK C LEU B 263 N MSE B 264 1555 1555 1.33 LINK C MSE B 264 N GLU B 265 1555 1555 1.33 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C THR A 24 N MSE A 25 1555 1555 1.33 LINK C MSE A 25 N VAL A 26 1555 1555 1.33 LINK C ILE A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N LYS A 67 1555 1555 1.33 LINK C LYS A 122 N MSE A 123 1555 1555 1.33 LINK C MSE A 123 N GLN A 124 1555 1555 1.33 LINK C LYS A 191 N MSE A 192 1555 1555 1.33 LINK C MSE A 192 N ALA A 193 1555 1555 1.33 LINK C ASP A 227 N MSE A 228 1555 1555 1.33 LINK C MSE A 228 N GLY A 229 1555 1555 1.33 LINK C LEU A 263 N MSE A 264 1555 1555 1.33 LINK C MSE A 264 N GLU A 265 1555 1555 1.33 LINK C MSE C 1 N THR C 2 1555 1555 1.33 LINK C THR C 24 N MSE C 25 1555 1555 1.33 LINK C MSE C 25 N VAL C 26 1555 1555 1.33 LINK C ILE C 65 N MSE C 66 1555 1555 1.33 LINK C MSE C 66 N LYS C 67 1555 1555 1.33 LINK C LYS C 122 N MSE C 123 1555 1555 1.33 LINK C MSE C 123 N GLN C 124 1555 1555 1.33 LINK C LYS C 191 N MSE C 192 1555 1555 1.33 LINK C MSE C 192 N ALA C 193 1555 1555 1.33 LINK C ASP C 227 N MSE C 228 1555 1555 1.33 LINK C MSE C 228 N GLY C 229 1555 1555 1.33 LINK C LEU C 263 N MSE C 264 1555 1555 1.33 LINK C MSE C 264 N GLU C 265 1555 1555 1.33 SITE 1 AC1 11 ASN B 29 ASP B 58 GLY B 59 TYR B 60 SITE 2 AC1 11 THR B 61 ARG B 62 ASN B 98 ARG B 101 SITE 3 AC1 11 HOH B 404 HOH B 406 HOH B 408 SITE 1 AC2 9 VAL A 26 ASN A 29 ASP A 58 GLY A 59 SITE 2 AC2 9 TYR A 60 THR A 61 ARG A 62 ARG A 101 SITE 3 AC2 9 HOH A 404 SITE 1 AC3 7 TRP C 201 LYS C 204 TYR C 205 ASP C 208 SITE 2 AC3 7 ARG C 242 ASP C 243 HOH C 401 SITE 1 AC4 8 VAL C 26 ASP C 58 GLY C 59 TYR C 60 SITE 2 AC4 8 THR C 61 ARG C 62 ASN C 98 ARG C 101 CRYST1 71.030 98.700 307.200 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014079 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010132 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003255 0.00000 HETATM 1 N MSE B 1 6.985 10.913 47.736 1.00108.46 N HETATM 2 CA MSE B 1 5.815 11.162 46.901 1.00108.90 C HETATM 3 C MSE B 1 6.093 12.246 45.864 1.00102.43 C HETATM 4 O MSE B 1 6.717 13.262 46.169 1.00100.87 O HETATM 5 CB MSE B 1 4.619 11.570 47.764 1.00112.71 C HETATM 6 CG MSE B 1 3.339 11.791 46.973 1.00114.49 C HETATM 7 SE MSE B 1 2.354 13.370 47.553 1.00177.18 SE HETATM 8 CE MSE B 1 3.655 14.738 47.057 1.00104.05 C