HEADER HYDROLASE 24-MAY-16 5K61 TITLE CRYSTAL STRUCTURE OF N-TERMINAL AMIDASE WITH GLN-GLY PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NTA1P; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN CEN.PK113-7D); SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 889517; SOURCE 5 STRAIN: CEN.PK113-7D; SOURCE 6 GENE: CENPK1137D_1355; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS N-END RULE, NITRILASE SUPERFAMILY, NTA1, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.KIM,S.-J.OH,B.-G.LEE,H.K.SONG REVDAT 2 20-MAR-24 5K61 1 REMARK REVDAT 1 19-APR-17 5K61 0 JRNL AUTH M.K.KIM,S.J.OH,B.G.LEE,H.K.SONG JRNL TITL STRUCTURAL BASIS FOR DUAL SPECIFICITY OF YEAST N-TERMINAL JRNL TITL 2 AMIDASE IN THE N-END RULE PATHWAY. JRNL REF PROC. NATL. ACAD. SCI. V. 113 12438 2016 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 27791147 JRNL DOI 10.1073/PNAS.1612620113 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 36454 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.490 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4041 - 4.8185 0.99 2612 152 0.1784 0.2041 REMARK 3 2 4.8185 - 3.8264 1.00 2512 146 0.1496 0.1694 REMARK 3 3 3.8264 - 3.3432 1.00 2496 144 0.1791 0.1977 REMARK 3 4 3.3432 - 3.0377 1.00 2460 143 0.1950 0.2068 REMARK 3 5 3.0377 - 2.8201 1.00 2467 144 0.2029 0.2355 REMARK 3 6 2.8201 - 2.6539 1.00 2448 141 0.1952 0.2358 REMARK 3 7 2.6539 - 2.5211 1.00 2449 143 0.2022 0.2315 REMARK 3 8 2.5211 - 2.4114 1.00 2455 142 0.2054 0.2205 REMARK 3 9 2.4114 - 2.3186 1.00 2431 141 0.2053 0.2501 REMARK 3 10 2.3186 - 2.2386 1.00 2426 141 0.2167 0.2342 REMARK 3 11 2.2386 - 2.1686 1.00 2450 142 0.2190 0.2551 REMARK 3 12 2.1686 - 2.1066 1.00 2406 140 0.2359 0.2902 REMARK 3 13 2.1066 - 2.0512 1.00 2430 142 0.2293 0.2902 REMARK 3 14 2.0512 - 2.0011 0.99 2412 139 0.2428 0.2914 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3423 REMARK 3 ANGLE : 1.029 4639 REMARK 3 CHIRALITY : 0.041 522 REMARK 3 PLANARITY : 0.005 591 REMARK 3 DIHEDRAL : 12.789 1224 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K61 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000218657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97960 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36454 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 33.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 15.70 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 66.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MG ACETATE TETRAHYDRATE, 0.2M NA REMARK 280 CACODYLATE PH6.5, 20% (W/V) PEG 8000, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 66.79900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 66.79900 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.56150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 66.79900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 29.78075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 66.79900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 89.34225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 66.79900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 89.34225 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.79900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.78075 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 66.79900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 66.79900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.56150 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 66.79900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 66.79900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 59.56150 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 66.79900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 89.34225 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 66.79900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 29.78075 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.79900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 29.78075 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 66.79900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 89.34225 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 66.79900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 66.79900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 59.56150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 820 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 830 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 835 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ILE A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 5 REMARK 465 ILE A 6 REMARK 465 HIS A 7 REMARK 465 GLY A 8 REMARK 465 ALA A 9 REMARK 465 LYS A 10 REMARK 465 MET A 11 REMARK 465 SER A 12 REMARK 465 GLY A 343 REMARK 465 LYS A 346 REMARK 465 GLU A 347 REMARK 465 ASP A 348 REMARK 465 THR A 349 REMARK 465 ILE A 350 REMARK 465 LYS A 416 REMARK 465 GLY A 417 REMARK 465 SER A 418 REMARK 465 GLN A 419 REMARK 465 ASP A 420 REMARK 465 ASP A 421 REMARK 465 ASP A 422 REMARK 465 GLU A 423 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 GLU A 114 CG CD OE1 OE2 REMARK 470 GLN A 115 CG CD OE1 NE2 REMARK 470 ASP A 141 CG OD1 OD2 REMARK 470 MET A 144 CG SD CE REMARK 470 ASP A 147 CG OD1 OD2 REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 ASN A 170 CG OD1 ND2 REMARK 470 ASN A 175 CG OD1 ND2 REMARK 470 ASN A 200 CG OD1 ND2 REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 GLN A 273 CG CD OE1 NE2 REMARK 470 SER A 280 OG REMARK 470 ASP A 281 CG OD1 OD2 REMARK 470 ASP A 282 CG OD1 OD2 REMARK 470 SER A 283 OG REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 325 CG CD OE1 OE2 REMARK 470 ARG A 332 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 341 CG CD CE NZ REMARK 470 ASP A 342 CG OD1 OD2 REMARK 470 HIS A 345 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 351 CG OD1 OD2 REMARK 470 LEU A 352 CG CD1 CD2 REMARK 470 LEU A 353 CG CD1 CD2 REMARK 470 ASP A 354 CG OD1 OD2 REMARK 470 SER A 355 OG REMARK 470 GLU A 356 CG CD OE1 OE2 REMARK 470 GLU A 357 CG CD OE1 OE2 REMARK 470 LYS A 414 CG CD CE NZ REMARK 470 PRO A 415 CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 603 O HOH A 783 1.99 REMARK 500 O HOH A 709 O HOH A 729 2.14 REMARK 500 N THR A 13 O HOH A 601 2.15 REMARK 500 O HOH A 842 O HOH A 843 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 606 O HOH A 609 3545 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 118 C ASN A 119 N -0.171 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 118 O - C - N ANGL. DEV. = -10.4 DEGREES REMARK 500 ASN A 119 C - N - CA ANGL. DEV. = 20.7 DEGREES REMARK 500 ASN A 119 O - C - N ANGL. DEV. = 10.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 27 76.38 -119.62 REMARK 500 SER A 187 -91.02 19.85 REMARK 500 LYS A 194 17.41 50.70 REMARK 500 PHE A 202 59.84 37.41 REMARK 500 ASP A 289 74.22 59.15 REMARK 500 ASP A 354 54.62 -103.48 REMARK 500 ASP A 427 -158.69 -155.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 841 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH A 842 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A 843 DISTANCE = 6.69 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 GLN A 501 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GLN A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K5U RELATED DB: PDB REMARK 900 RELATED ID: 5K5V RELATED DB: PDB REMARK 900 RELATED ID: 5K60 RELATED DB: PDB REMARK 900 RELATED ID: 5K62 RELATED DB: PDB REMARK 900 RELATED ID: 5K63 RELATED DB: PDB REMARK 900 RELATED ID: 5K66 RELATED DB: PDB REMARK 900 RELATED ID: 5B62 RELATED DB: PDB DBREF 5K61 A 1 457 UNP N1P8Q8 N1P8Q8_YEASC 1 457 SEQADV 5K61 GLY A -1 UNP N1P8Q8 EXPRESSION TAG SEQADV 5K61 SER A 0 UNP N1P8Q8 EXPRESSION TAG SEQADV 5K61 SER A 187 UNP N1P8Q8 CYS 187 ENGINEERED MUTATION SEQRES 1 A 459 GLY SER MET LEU ILE ASP ALA ILE HIS GLY ALA LYS MET SEQRES 2 A 459 SER THR LYS LEU LEU VAL SER LEU LYS VAL LEU VAL ILE SEQRES 3 A 459 GLN LEU ASN PRO GLN ILE GLY GLN VAL ASP GLN THR ILE SEQRES 4 A 459 LYS ARG THR TRP SER ILE LEU ASP LYS VAL THR LYS SER SEQRES 5 A 459 ALA THR TYR VAL LYS PRO ASP ILE ILE LEU PHE PRO GLU SEQRES 6 A 459 PHE ALA LEU THR GLY TYR SER PHE HIS ALA ARG LYS ASP SEQRES 7 A 459 ILE LEU PRO TYR VAL THR LYS LYS ASP GLU GLY PRO SER SEQRES 8 A 459 PHE GLU LEU ALA LYS SER ILE SER GLU LYS PHE GLN CYS SEQRES 9 A 459 TYR THR ILE ILE GLY TYR PRO GLU GLU ASP ASP GLU GLN SEQRES 10 A 459 LYS LEU TYR ASN SER ALA LEU VAL VAL ASN PRO GLN GLY SEQRES 11 A 459 GLY GLN ILE PHE ASN TYR ARG LYS THR PHE LEU TYR ASP SEQRES 12 A 459 THR GLU MET ASN TRP ASP CYS GLU GLU ASN PRO GLU GLY SEQRES 13 A 459 PHE GLN THR PHE PRO MET ASP PHE SER LYS CYS ALA LYS SEQRES 14 A 459 LEU SER ASN GLU ASP SER TYR ASN ARG ASP VAL THR LEU SEQRES 15 A 459 LYS ALA SER ILE GLY ILE SER MET ASP LEU SER PRO TYR SEQRES 16 A 459 LYS PHE MET ALA PRO PHE ASN HIS PHE GLU PHE SER SER SEQRES 17 A 459 PHE CYS VAL ASP ASN ASN VAL GLU LEU ILE LEU CYS PRO SEQRES 18 A 459 MET ALA TRP LEU ASN SER THR SER ILE THR ASP LYS GLN SEQRES 19 A 459 THR LEU HIS ASN ASN SER LEU LEU GLU ALA ALA LYS ASN SEQRES 20 A 459 LYS ILE ALA PHE ALA LEU LYS GLU GLN GLY LEU PRO LEU SEQRES 21 A 459 ALA GLY SER GLN GLY ILE TYR GLN LEU LYS ILE GLY ASP SEQRES 22 A 459 SER GLN ARG THR PRO ARG VAL PRO SER ASP ASP SER THR SEQRES 23 A 459 SER GLU TYR LYS ASP MET ASP GLU PRO ASP MET SER ASN SEQRES 24 A 459 VAL ASN TYR TRP ILE LEU ARG PHE PHE PRO PHE LEU TYR SEQRES 25 A 459 PHE LYS LEU ARG ILE ASN TRP PHE LYS ASN SER SER LEU SEQRES 26 A 459 ILE GLU SER ILE LEU GLY LYS THR ARG MET PRO LEU ASP SEQRES 27 A 459 HIS GLU TYR TYR LYS ASP GLY LYS HIS LYS GLU ASP THR SEQRES 28 A 459 ILE ASP LEU LEU ASP SER GLU GLU VAL ILE LYS ASP THR SEQRES 29 A 459 VAL LEU GLU LYS THR PHE LEU GLY THR SER LEU GLY GLN SEQRES 30 A 459 PRO TRP LYS PHE GLN GLY LYS ASN ALA ILE LEU VAL LEU SEQRES 31 A 459 ALA ASN ARG CYS GLY THR GLU ASP GLY THR THR ILE PHE SEQRES 32 A 459 ALA GLY SER SER GLY ILE TYR LYS PHE ASN GLY LYS LYS SEQRES 33 A 459 PRO LYS GLY SER GLN ASP ASP ASP GLU SER SER LEU ASP SEQRES 34 A 459 SER LEU ASN GLU SER VAL GLU LEU LEU GLY ASN LEU GLY SEQRES 35 A 459 LYS GLY LEU GLU GLY ALA ILE LEU ARG GLU VAL GLN PHE SEQRES 36 A 459 GLU VAL PHE ARG HET GLN A 501 10 HETNAM GLN GLUTAMINE FORMUL 2 GLN C5 H10 N2 O3 FORMUL 3 HOH *243(H2 O) HELIX 1 AA1 GLN A 32 LYS A 49 1 18 HELIX 2 AA2 ALA A 73 LEU A 78 1 6 HELIX 3 AA3 PRO A 79 VAL A 81 5 3 HELIX 4 AA4 GLY A 87 GLN A 101 1 15 HELIX 5 AA5 TYR A 140 ASN A 145 1 6 HELIX 6 AA6 ILE A 186 SER A 191 5 6 HELIX 7 AA7 PRO A 192 MET A 196 5 5 HELIX 8 AA8 PRO A 198 HIS A 201 5 4 HELIX 9 AA9 PHE A 202 ASN A 211 1 10 HELIX 10 AB1 ASP A 230 HIS A 235 1 6 HELIX 11 AB2 ASN A 236 GLN A 254 1 19 HELIX 12 AB3 ASP A 294 PHE A 305 1 12 HELIX 13 AB4 PHE A 306 LEU A 309 5 4 HELIX 14 AB5 LEU A 313 ASN A 320 1 8 HELIX 15 AB6 LEU A 323 LYS A 330 1 8 HELIX 16 AB7 HIS A 337 LYS A 341 5 5 HELIX 17 AB8 ASP A 351 SER A 355 5 5 HELIX 18 AB9 LYS A 360 LYS A 366 1 7 SHEET 1 AA1 7 GLN A 130 ARG A 135 0 SHEET 2 AA1 7 LEU A 117 VAL A 124 -1 N VAL A 123 O PHE A 132 SHEET 3 AA1 7 TYR A 103 GLU A 111 -1 N TYR A 108 O SER A 120 SHEET 4 AA1 7 ILE A 58 LEU A 60 1 N ILE A 59 O ILE A 105 SHEET 5 AA1 7 LYS A 14 GLN A 25 1 N LEU A 22 O ILE A 58 SHEET 6 AA1 7 GLY A 445 PHE A 456 -1 O VAL A 455 N LEU A 15 SHEET 7 AA1 7 GLN A 266 ILE A 269 1 N LYS A 268 O ALA A 446 SHEET 1 AA211 GLN A 130 ARG A 135 0 SHEET 2 AA211 LEU A 117 VAL A 124 -1 N VAL A 123 O PHE A 132 SHEET 3 AA211 TYR A 103 GLU A 111 -1 N TYR A 108 O SER A 120 SHEET 4 AA211 ILE A 58 LEU A 60 1 N ILE A 59 O ILE A 105 SHEET 5 AA211 LYS A 14 GLN A 25 1 N LEU A 22 O ILE A 58 SHEET 6 AA211 THR A 157 LYS A 167 -1 O CYS A 165 N SER A 18 SHEET 7 AA211 ARG A 176 ILE A 184 -1 O VAL A 178 N PHE A 162 SHEET 8 AA211 LEU A 215 MET A 220 1 O LEU A 217 N SER A 183 SHEET 9 AA211 ALA A 384 ASN A 390 1 O ILE A 385 N ILE A 216 SHEET 10 AA211 GLY A 406 PHE A 410 -1 O GLY A 406 N LEU A 388 SHEET 11 AA211 VAL A 433 ASN A 438 -1 O GLU A 434 N LYS A 409 SHEET 1 AA3 2 THR A 367 PHE A 368 0 SHEET 2 AA3 2 THR A 371 SER A 372 -1 O THR A 371 N PHE A 368 SHEET 1 AA4 2 THR A 394 GLU A 395 0 SHEET 2 AA4 2 THR A 399 ILE A 400 -1 O THR A 399 N GLU A 395 SITE 1 AC1 8 TYR A 69 LYS A 136 TYR A 140 SER A 187 SITE 2 AC1 8 PHE A 195 ALA A 221 TRP A 222 LEU A 223 CRYST1 133.598 133.598 119.123 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007485 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008395 0.00000