HEADER HYDROLASE 25-MAY-16 5K6M TITLE STRUCTURE OF A GH3 B-GLICOSIDASE FROM COW RUMEN METAGENOME IN COMPLEX TITLE 2 WITH GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-GLUCOSIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METAGENOME; SOURCE 3 ORGANISM_TAXID: 256318; SOURCE 4 GENE: GLYA1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PQE80L; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PLASMID KEYWDS GLYCOSIDE HYDROLASE, METAGENOME, B-GLICOSIDASE, FUNCTIONAL FOOD, KEYWDS 2 PREBIOTICS, MICROBIOTA, GLUCOSE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.RAMIREZ-ESCUDERO,J.SANZ-APARICIO REVDAT 6 10-JAN-24 5K6M 1 HETSYN REVDAT 5 29-JUL-20 5K6M 1 COMPND REMARK HETNAM SITE REVDAT 4 07-MAR-18 5K6M 1 REMARK REVDAT 3 23-NOV-16 5K6M 1 JRNL REVDAT 2 12-OCT-16 5K6M 1 JRNL REVDAT 1 05-OCT-16 5K6M 0 JRNL AUTH M.RAMIREZ-ESCUDERO,M.V.DEL POZO,J.MARIN-NAVARRO,B.GONZALEZ, JRNL AUTH 2 P.N.GOLYSHIN,J.POLAINA,M.FERRER,J.SANZ-APARICIO JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF A RUMINAL JRNL TITL 2 BETA-GLYCOSIDASE DEFINES A NOVEL SUBFAMILY OF GLYCOSIDE JRNL TITL 3 HYDROLASE FAMILY 3 WITH PERMUTED DOMAIN TOPOLOGY. JRNL REF J.BIOL.CHEM. V. 291 24200 2016 JRNL REFN ESSN 1083-351X JRNL PMID 27679487 JRNL DOI 10.1074/JBC.M116.747527 REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 48548 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2584 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3547 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 178 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6121 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 328 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.29000 REMARK 3 B22 (A**2) : -2.83000 REMARK 3 B33 (A**2) : -2.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.139 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.723 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6248 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5828 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8442 ; 1.218 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13449 ; 0.878 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 789 ; 6.148 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 290 ;37.566 ;24.862 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1080 ;12.251 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;13.552 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 931 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7141 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1386 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3162 ; 1.270 ; 3.028 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3161 ; 1.270 ; 3.027 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3949 ; 2.156 ; 4.535 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3950 ; 2.156 ; 4.536 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3086 ; 1.572 ; 3.260 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3082 ; 1.572 ; 3.257 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4488 ; 2.676 ; 4.805 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7167 ; 4.164 ;24.168 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7059 ; 4.081 ;24.092 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5K6M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221398. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JAN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : KB MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51199 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 95.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.57900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5K6L REMARK 200 REMARK 200 REMARK: ELONGATED BAR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.2M (NH4)2SO4, 0.1M BIS REMARK 280 -TRIS PH 5.5, THEN SOAKED IN 20% GLUCOSE., VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.31550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.70850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.59100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.70850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.31550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.59100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ILE A 3 REMARK 465 LEU A 104 REMARK 465 GLY A 105 REMARK 465 TRP A 106 REMARK 465 GLY A 107 REMARK 465 VAL A 799 REMARK 465 ILE A 800 REMARK 465 GLU A 801 REMARK 465 GLU A 802 REMARK 465 ASP A 803 REMARK 465 ALA A 804 REMARK 465 PHE A 805 REMARK 465 ASP A 806 REMARK 465 ILE A 807 REMARK 465 GLU A 808 REMARK 465 ASN A 809 REMARK 465 ALA A 810 REMARK 465 GLU A 811 REMARK 465 TYR A 812 REMARK 465 LEU A 813 REMARK 465 VAL A 814 REMARK 465 LEU A 815 REMARK 465 LYS A 816 REMARK 465 GLY A 817 REMARK 465 ASN A 818 REMARK 465 ILE A 819 REMARK 465 THR A 820 REMARK 465 VAL A 821 REMARK 465 SER A 822 REMARK 465 LEU A 823 REMARK 465 LYS A 824 REMARK 465 ASN A 825 REMARK 465 LYS A 826 REMARK 465 GLU A 827 REMARK 465 SER A 828 REMARK 465 LYS A 829 REMARK 465 ALA A 830 REMARK 465 GLY A 831 REMARK 465 THR A 832 REMARK 465 ASN A 833 REMARK 465 TYR A 834 REMARK 465 TYR A 835 REMARK 465 ILE A 836 REMARK 465 PRO A 837 REMARK 465 LEU A 838 REMARK 465 ASP A 839 REMARK 465 ILE A 840 REMARK 465 GLN A 841 REMARK 465 ASP A 842 REMARK 465 LEU A 843 REMARK 465 GLY A 844 REMARK 465 MET A 845 REMARK 465 TYR A 846 REMARK 465 ASP A 847 REMARK 465 ILE A 848 REMARK 465 SER A 849 REMARK 465 VAL A 850 REMARK 465 THR A 851 REMARK 465 ALA A 852 REMARK 465 SER A 853 REMARK 465 SER A 854 REMARK 465 MET A 855 REMARK 465 LEU A 856 REMARK 465 GLY A 857 REMARK 465 GLU A 858 REMARK 465 VAL A 859 REMARK 465 ALA A 860 REMARK 465 GLN A 861 REMARK 465 LEU A 862 REMARK 465 PRO A 863 REMARK 465 CYS A 864 REMARK 465 THR A 865 REMARK 465 LEU A 866 REMARK 465 TYR A 867 REMARK 465 TYR A 868 REMARK 465 THR A 869 REMARK 465 GLY A 870 REMARK 465 VAL A 871 REMARK 465 PRO A 872 REMARK 465 PHE A 873 REMARK 465 LEU A 874 REMARK 465 THR A 875 REMARK 465 TYR A 876 REMARK 465 THR A 877 REMARK 465 PHE A 878 REMARK 465 ASN A 879 REMARK 465 GLY A 880 REMARK 465 SER A 881 REMARK 465 GLY A 882 REMARK 465 GLY A 883 REMARK 465 LYS A 884 REMARK 465 ASP A 885 REMARK 465 VAL A 886 REMARK 465 THR A 887 REMARK 465 ILE A 888 REMARK 465 THR A 889 REMARK 465 LYS A 890 REMARK 465 SER A 891 REMARK 465 MET A 892 REMARK 465 ASP A 893 REMARK 465 PHE A 894 REMARK 465 HIS A 895 REMARK 465 ASN A 896 REMARK 465 ARG A 897 REMARK 465 MET A 898 REMARK 465 ALA A 899 REMARK 465 VAL A 900 REMARK 465 ILE A 901 REMARK 465 ARG A 902 REMARK 465 LEU A 903 REMARK 465 ASN A 904 REMARK 465 VAL A 905 REMARK 465 ALA A 906 REMARK 465 LYS A 907 REMARK 465 ASN A 908 REMARK 465 GLY A 909 REMARK 465 LEU A 910 REMARK 465 ASN A 911 REMARK 465 LEU A 912 REMARK 465 ASP A 913 REMARK 465 ARG A 914 REMARK 465 ILE A 915 REMARK 465 GLU A 916 REMARK 465 PHE A 917 REMARK 465 LYS A 918 REMARK 465 LYS A 919 REMARK 465 GLN A 920 REMARK 465 GLN A 921 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 84 102.19 -58.70 REMARK 500 ASP A 144 -4.80 67.68 REMARK 500 ALA A 153 -100.72 -124.37 REMARK 500 ASN A 193 69.58 67.32 REMARK 500 TRP A 201 -147.62 53.12 REMARK 500 SER A 222 19.48 -141.67 REMARK 500 ASP A 253 -128.18 62.36 REMARK 500 GLU A 265 55.31 -147.91 REMARK 500 GLU A 392 59.06 -92.36 REMARK 500 LEU A 410 -148.13 -119.59 REMARK 500 THR A 506 127.23 -39.33 REMARK 500 MET A 587 34.58 -150.40 REMARK 500 THR A 693 -67.27 -109.12 REMARK 500 ASN A 724 20.98 -145.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1428 DISTANCE = 6.79 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K6L RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN COMPLEXED WITH GLYCEROL DBREF 5K6M A 1 921 PDB 5K6M 5K6M 1 921 SEQRES 1 A 921 MET ASN ILE GLU LYS VAL ILE LEU ASP TRP ASN GLU TYR SEQRES 2 A 921 ILE GLU ALA ALA ARG SER VAL VAL SER GLU GLY CYS VAL SEQRES 3 A 921 LEU LEU GLU ASN ASN GLY THR LEU PRO LEU GLU LYS GLY SEQRES 4 A 921 ALA VAL VAL SER ILE PHE GLY ARG ILE GLN THR HIS TYR SEQRES 5 A 921 TYR LYS SER GLY THR GLY SER GLY GLY MET VAL ASN VAL SEQRES 6 A 921 THR HIS VAL VAL GLY VAL PRO GLU GLY LEU LYS LEU SER SEQRES 7 A 921 GLU HIS VAL THR VAL ASN GLU GLU LEU GLU ASN ILE TYR SEQRES 8 A 921 LYS GLU TRP GLU GLU GLU ASN PRO PHE ASP GLU GLY LEU SEQRES 9 A 921 GLY TRP GLY THR GLU PRO TRP SER GLN PRO GLU MET GLU SEQRES 10 A 921 LEU THR ASP GLU ILE VAL SER ASN ALA SER ALA LYS SER SEQRES 11 A 921 ASP VAL ALA ILE VAL ILE ILE GLY ARG THR ALA GLY GLU SEQRES 12 A 921 ASP LYS ASP PHE SER ASP VAL ALA GLY ALA TYR LYS LEU SEQRES 13 A 921 SER GLU THR GLU GLU ASP MET LEU ARG ARG VAL ARG LYS SEQRES 14 A 921 HIS PHE ASP LYS MET VAL VAL LEU LEU ASN VAL GLY SER SEQRES 15 A 921 LEU MET ASP LEU ASN VAL ILE SER GLU ILE ASN PRO ASP SEQRES 16 A 921 ALA LEU MET VAL ILE TRP GLN GLY GLY MET ILE GLY GLY SEQRES 17 A 921 LEU GLY THR ALA ASP VAL LEU THR GLY LYS VAL ASN PRO SEQRES 18 A 921 SER GLY LYS LEU THR ASP THR ILE ALA TYR GLU ILE ASN SEQRES 19 A 921 ASP TYR PRO SER THR GLU ASN PHE GLY ASP PRO VAL ARG SEQRES 20 A 921 ASP TYR TYR ALA GLU ASP ILE TYR VAL GLY TYR ARG TYR SEQRES 21 A 921 PHE GLU THR PHE GLU LYS SER LYS VAL ARG TYR PRO PHE SEQRES 22 A 921 GLY TYR GLY ILE SER TYR THR GLU PHE GLU HIS THR VAL SEQRES 23 A 921 GLY GLU PHE THR ALA ASP ILE ASN SER ARG THR PHE THR SEQRES 24 A 921 ALA SER CYS THR VAL LYS ASN THR GLY SER VAL ALA GLY SEQRES 25 A 921 LYS ASP VAL ALA GLN PHE TYR VAL SER ALA PRO GLN GLY SEQRES 26 A 921 LYS LEU GLY LYS PRO GLU LYS VAL LEU VAL ALA PHE LYS SEQRES 27 A 921 LYS THR GLY ILE LEU ASN PRO GLY LYS GLU GLU LYS ILE SEQRES 28 A 921 THR VAL THR VAL PRO PHE ASP ARG PHE ALA SER PHE ASP SEQRES 29 A 921 ASP THR GLY VAL THR GLY ALA GLU SER CYS PHE VAL LEU SEQRES 30 A 921 GLU ALA GLY GLU TYR THR VAL TYR GLU GLY LYS ASN VAL SEQRES 31 A 921 ARG GLU SER TYR LYS GLU GLY SER PHE THR LEU GLU GLU SEQRES 32 A 921 ASN ILE VAL THR GLU LYS LEU SER LYS ALA LEU ALA PRO SEQRES 33 A 921 MET GLU SER PHE LYS ARG MET LYS ALA SER GLU ASN SER SEQRES 34 A 921 ASP GLY THR LEU SER VAL LYS TYR GLU ASP VAL PRO VAL SEQRES 35 A 921 SER ASP VAL ASP GLU LYS LYS ARG ARG LEU ASP ASN MET SEQRES 36 A 921 PRO VAL GLU ILE PRO GLN ASP PHE THR ALA ARG TYR SER SEQRES 37 A 921 LEU LYS ASP VAL LEU SER GLY SER VAL ASP MET GLU LYS SEQRES 38 A 921 PHE ILE ALA ARG LEU SER ASP ASP ASP LEU ALA CYS ILE SEQRES 39 A 921 VAL ARG GLY GLU GLY MET GLY SER SER LEU VAL THR ALA SEQRES 40 A 921 GLY THR ALA ALA ALA PHE GLY GLY VAL SER GLU TYR LEU SEQRES 41 A 921 ARG LYS MET ASP ILE PRO ALA VAL CYS CYS ASP ASP GLY SEQRES 42 A 921 PRO SER GLY MET ARG LEU ASP SER GLY ALA THR ALA PHE SEQRES 43 A 921 SER MET PRO ASN GLY THR MET LEU ALA SER THR PHE ASN SEQRES 44 A 921 PRO ASP VAL ILE GLU ARG MET TYR GLY PHE THR SER LEU SEQRES 45 A 921 GLU MET ILE TYR ASN LYS VAL GLU CYS LEU LEU GLY PRO SEQRES 46 A 921 GLY MET ASN ILE HIS ARG ASN PRO LEU ASN GLY ARG ASN SEQRES 47 A 921 PHE GLU TYR PHE SER GLU ASP PRO TYR LEU ASN GLY THR SEQRES 48 A 921 ILE ALA SER ALA MET LEU LYS GLY LEU HIS LYS TYR GLY SEQRES 49 A 921 SER ASP GLY VAL ALA LYS HIS PHE CYS CYS ASN ASN GLN SEQRES 50 A 921 GLU LEU GLY ARG GLN ALA CYS ASP SER VAL VAL SER GLN SEQRES 51 A 921 ARG ALA LEU ARG GLU ILE TYR LEU LYS GLY PHE GLU ILE SEQRES 52 A 921 ALA VAL LYS GLU GLY GLY CYS LYS ALA PHE MET THR THR SEQRES 53 A 921 TYR ALA GLN VAL ASN GLY MET TRP THR ALA GLY ASN TYR SEQRES 54 A 921 ASP LEU ASN THR ARG ILE LEU ARG ASP GLU TRP GLY PHE SEQRES 55 A 921 LYS GLY ILE VAL MET THR ASP TRP TRP ALA GLN VAL ASN SEQRES 56 A 921 ASP ARG GLY GLY GLU PRO THR LYS ASN ASN THR ALA ALA SEQRES 57 A 921 MET VAL ARG ALA GLN ASN ASP LEU TYR MET VAL THR ALA SEQRES 58 A 921 ASN ALA ALA MET ASN SER ALA ASN ASP ASN THR LEU SER SEQRES 59 A 921 GLN LEU SER GLU GLY LYS LEU ASN ARG ALA GLU LEU GLN SEQRES 60 A 921 ARG CYS ALA MET ASN ILE CYS GLU TYR ALA MET ASN THR SEQRES 61 A 921 MET ALA MET LYS ARG LEU CYS ARG ASN ASP ILE LYS VAL SEQRES 62 A 921 GLU ILE ALA GLY ARG VAL ILE GLU GLU ASP ALA PHE ASP SEQRES 63 A 921 ILE GLU ASN ALA GLU TYR LEU VAL LEU LYS GLY ASN ILE SEQRES 64 A 921 THR VAL SER LEU LYS ASN LYS GLU SER LYS ALA GLY THR SEQRES 65 A 921 ASN TYR TYR ILE PRO LEU ASP ILE GLN ASP LEU GLY MET SEQRES 66 A 921 TYR ASP ILE SER VAL THR ALA SER SER MET LEU GLY GLU SEQRES 67 A 921 VAL ALA GLN LEU PRO CYS THR LEU TYR TYR THR GLY VAL SEQRES 68 A 921 PRO PHE LEU THR TYR THR PHE ASN GLY SER GLY GLY LYS SEQRES 69 A 921 ASP VAL THR ILE THR LYS SER MET ASP PHE HIS ASN ARG SEQRES 70 A 921 MET ALA VAL ILE ARG LEU ASN VAL ALA LYS ASN GLY LEU SEQRES 71 A 921 ASN LEU ASP ARG ILE GLU PHE LYS LYS GLN GLN HET BGC A1000 12 HET SO4 A1001 5 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 BGC C6 H12 O6 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *328(H2 O) HELIX 1 AA1 TRP A 10 CYS A 25 1 16 HELIX 2 AA2 GLY A 46 HIS A 51 5 6 HELIX 3 AA3 GLY A 58 MET A 62 5 5 HELIX 4 AA4 GLY A 70 SER A 78 1 9 HELIX 5 AA5 ASN A 84 ASN A 98 1 15 HELIX 6 AA6 THR A 119 LYS A 129 1 11 HELIX 7 AA7 SER A 157 PHE A 171 1 15 HELIX 8 AA8 LEU A 186 ASN A 193 1 8 HELIX 9 AA9 ILE A 206 THR A 216 1 11 HELIX 10 AB1 GLU A 232 TYR A 236 5 5 HELIX 11 AB2 SER A 238 PHE A 242 5 5 HELIX 12 AB3 GLY A 257 GLU A 265 1 9 HELIX 13 AB4 ASP A 358 ALA A 361 5 4 HELIX 14 AB5 ASP A 446 ASN A 454 1 9 HELIX 15 AB6 SER A 468 SER A 474 1 7 HELIX 16 AB7 ASP A 478 ALA A 484 1 7 HELIX 17 AB8 SER A 487 VAL A 495 1 9 HELIX 18 AB9 SER A 517 MET A 523 1 7 HELIX 19 AC1 ASN A 550 THR A 557 1 8 HELIX 20 AC2 ASN A 559 ASN A 577 1 19 HELIX 21 AC3 ASN A 595 TYR A 601 5 7 HELIX 22 AC4 ASP A 605 LYS A 622 1 18 HELIX 23 AC5 SER A 649 ILE A 656 1 8 HELIX 24 AC6 LEU A 658 GLU A 667 1 10 HELIX 25 AC7 TRP A 684 GLY A 687 5 4 HELIX 26 AC8 ASN A 688 THR A 693 1 6 HELIX 27 AC9 ASN A 725 ALA A 732 1 8 HELIX 28 AD1 ASN A 751 GLU A 758 1 8 HELIX 29 AD2 ASN A 762 ASN A 779 1 18 HELIX 30 AD3 THR A 780 CYS A 787 1 8 SHEET 1 AA1 2 LYS A 5 ASP A 9 0 SHEET 2 AA1 2 LYS A 792 ALA A 796 1 O LYS A 792 N VAL A 6 SHEET 1 AA2 6 VAL A 26 ASN A 30 0 SHEET 2 AA2 6 ALA A 196 VAL A 199 -1 O LEU A 197 N LEU A 28 SHEET 3 AA2 6 MET A 174 VAL A 180 1 N VAL A 176 O ALA A 196 SHEET 4 AA2 6 VAL A 132 ARG A 139 1 N VAL A 135 O VAL A 175 SHEET 5 AA2 6 ALA A 40 PHE A 45 1 N PHE A 45 O ILE A 134 SHEET 6 AA2 6 VAL A 81 VAL A 83 1 O THR A 82 N VAL A 42 SHEET 1 AA3 2 ILE A 229 ALA A 230 0 SHEET 2 AA3 2 VAL A 269 TYR A 271 -1 O TYR A 271 N ILE A 229 SHEET 1 AA4 3 ARG A 247 TYR A 249 0 SHEET 2 AA4 3 ASP A 645 VAL A 647 1 O VAL A 647 N ASP A 248 SHEET 3 AA4 3 GLN A 679 VAL A 680 1 O GLN A 679 N SER A 646 SHEET 1 AA5 3 PHE A 282 ASP A 292 0 SHEET 2 AA5 3 THR A 297 ASN A 306 -1 O THR A 303 N THR A 285 SHEET 3 AA5 3 GLU A 348 PRO A 356 -1 O ILE A 351 N CYS A 302 SHEET 1 AA6 4 VAL A 333 LYS A 339 0 SHEET 2 AA6 4 VAL A 315 SER A 321 -1 N PHE A 318 O ALA A 336 SHEET 3 AA6 4 GLY A 380 GLY A 387 -1 O TYR A 385 N TYR A 319 SHEET 4 AA6 4 SER A 393 LEU A 401 -1 O GLU A 396 N VAL A 384 SHEET 1 AA7 3 SER A 362 ASP A 364 0 SHEET 2 AA7 3 CYS A 374 LEU A 377 -1 O VAL A 376 N SER A 362 SHEET 3 AA7 3 ILE A 405 LYS A 409 -1 O ILE A 405 N LEU A 377 SHEET 1 AA8 2 LYS A 421 GLU A 427 0 SHEET 2 AA8 2 LEU A 433 ASP A 439 -1 O SER A 434 N SER A 426 SHEET 1 AA9 2 ARG A 496 GLU A 498 0 SHEET 2 AA9 2 TYR A 737 THR A 740 1 O TYR A 737 N GLY A 497 SHEET 1 AB1 4 ALA A 511 GLY A 514 0 SHEET 2 AB1 4 ALA A 527 ASP A 531 -1 O VAL A 528 N PHE A 513 SHEET 3 AB1 4 CYS A 581 LEU A 582 1 O CYS A 581 N ASP A 531 SHEET 4 AB1 4 ASP A 626 GLY A 627 1 O ASP A 626 N LEU A 582 SHEET 1 AB2 3 ALA A 629 PHE A 632 0 SHEET 2 AB2 3 ALA A 672 THR A 675 1 O MET A 674 N PHE A 632 SHEET 3 AB2 3 ILE A 705 MET A 707 1 O MET A 707 N PHE A 673 CISPEP 1 LEU A 34 PRO A 35 0 -0.99 CISPEP 2 GLY A 499 MET A 500 0 -12.26 CISPEP 3 ASP A 532 GLY A 533 0 -2.88 CISPEP 4 GLY A 584 PRO A 585 0 9.26 CISPEP 5 LYS A 630 HIS A 631 0 -8.58 CISPEP 6 PHE A 632 CYS A 633 0 -9.75 CISPEP 7 MET A 738 VAL A 739 0 -4.14 CRYST1 50.631 119.182 157.417 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019751 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006353 0.00000