HEADER CONTRACTILE PROTEIN 25-MAY-16 5K6P TITLE THE NMR STRUCTURE OF THE M DOMAIN TRI-HELIX BUNDLE AND C2 OF HUMAN TITLE 2 CARDIAC MYOSIN BINDING PROTEIN C COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-BINDING PROTEIN C, CARDIAC-TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 319-451; COMPND 5 SYNONYM: CARDIAC MYBP-C,C-PROTEIN,CARDIAC MUSCLE ISOFORM; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 TISSUE: HEART; SOURCE 6 GENE: MYBPC3; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PETM KEYWDS IMMUNOGLOBULIN, CONTRACTILE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.A.MICHIE,A.H.KWAN,C.S.TUNG,J.M.GUSS,J.TREWHELLA REVDAT 5 14-JUN-23 5K6P 1 REMARK REVDAT 4 01-JAN-20 5K6P 1 REMARK REVDAT 3 01-NOV-17 5K6P 1 COMPND JRNL REMARK REVDAT 2 16-NOV-16 5K6P 1 JRNL REVDAT 1 09-NOV-16 5K6P 0 JRNL AUTH K.A.MICHIE,A.H.KWAN,C.S.TUNG,J.M.GUSS,J.TREWHELLA JRNL TITL A HIGHLY CONSERVED YET FLEXIBLE LINKER IS PART OF A JRNL TITL 2 POLYMORPHIC PROTEIN-BINDING DOMAIN IN MYOSIN-BINDING PROTEIN JRNL TITL 3 C. JRNL REF STRUCTURE V. 24 2000 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27720588 JRNL DOI 10.1016/J.STR.2016.08.018 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, CNS 1.2 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TORSION ANGLE DYNAMICS, WATER REMARK 3 REFINEMENT WAS CARRIED OUT USING THE LOWEST 50 ENERGY STRUCTURES REMARK 3 FROM CYANA REMARK 4 REMARK 4 5K6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000218942. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 412 UM [U-99% 13C; U-99% 15N] REMARK 210 HUMAN CMYBP-C (319-451), 10 MM REMARK 210 MES, 1 MM CACL2, 50 MM NACL, 2 REMARK 210 MM TCEP, 1 MM NA AZIDE, 10 MM REMARK 210 DSS, 95% H2O/5% D2O; 920 UM [U- REMARK 210 99% 13C; U-99% 15N] HUMAN CMYBP- REMARK 210 C (319-451), 10 MM MES, 1 MM REMARK 210 CACL2, 50 MM NACL, 2 MM TCEP, 1 REMARK 210 MM NA AZIDE, 10 MM DSS, 95% H2O/ REMARK 210 5% D2O; 550 UM [U-99% 13C; U-99% REMARK 210 15N] HUMAN CMYBP-C (319-451), 10 REMARK 210 MM MES, 1 MM CACL2, 50 MM NACL, REMARK 210 1 MM NA AZIDE, 2 MM TCEP, 10 MM REMARK 210 DSS, 95% H2O/5% D2O; 500 UM [U- REMARK 210 99% 13C; U-99% 15N] HUMAN CMYBP- REMARK 210 C (319-451), 10 MM MES, 1 MM REMARK 210 CACL2, 50 MM NACL, 2 MM TCEP, 1 REMARK 210 MM NA AZIDE, 10 MM DSS, 99% D2O; REMARK 210 800 UM [U-99% 13C; U-99% 15N] REMARK 210 HUMAN CMYBP-C (319-451), 10 MM REMARK 210 MES, 1 MM CACL2, 50 MM NACL, 2 REMARK 210 MM TCEP, 1 MM NA AZIDE, 10 MM REMARK 210 DSS, 99% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D HNCO; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C HSQC; HCC(CO)NH REMARK 210 TOCSY; CC(CO)NH-TOCSY; 3D REMARK 210 HBHA(CO)NH; 3D CBCA(CO)NH; 3D 1H- REMARK 210 15N NOESY; 3D 13C NOESY AROMATIC; REMARK 210 3D HCCH-TOCSY; 2D HBCBCGCDHD; REMARK 210 2D HBCBCGCDCEHE; 3D 13C NOESY REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HCC TOCSY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANALYSIS, CYANA REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MONOMER AS DETERMINED BY GEL FILTRATION AND SAXS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 320 -21.88 72.14 REMARK 500 1 ASP A 344 45.53 -100.95 REMARK 500 1 SER A 362 64.93 81.62 REMARK 500 1 ASN A 399 18.61 50.40 REMARK 500 1 MET A 405 96.88 -67.63 REMARK 500 1 GLN A 425 74.32 56.05 REMARK 500 1 ASP A 431 99.11 -64.19 REMARK 500 2 GLU A 319 -62.18 -96.01 REMARK 500 2 ASP A 320 -7.76 67.58 REMARK 500 2 ASP A 344 44.75 -79.28 REMARK 500 2 ARG A 356 -29.12 77.67 REMARK 500 2 LYS A 361 -37.05 178.50 REMARK 500 2 SER A 362 27.96 178.52 REMARK 500 2 GLN A 425 61.65 68.52 REMARK 500 3 LYS A 360 -93.67 -101.74 REMARK 500 3 LYS A 361 -170.45 59.77 REMARK 500 3 ASN A 399 16.81 50.95 REMARK 500 3 GLN A 425 76.50 46.64 REMARK 500 3 ASP A 431 95.54 -67.13 REMARK 500 4 ASP A 320 -19.12 69.31 REMARK 500 4 ARG A 356 -79.07 -79.76 REMARK 500 4 ARG A 357 75.25 -176.98 REMARK 500 4 LYS A 361 -158.76 54.72 REMARK 500 4 ASN A 399 12.92 53.03 REMARK 500 4 GLN A 401 -98.89 -90.77 REMARK 500 4 GLU A 402 137.53 173.21 REMARK 500 5 ARG A 356 -69.20 -133.76 REMARK 500 5 ARG A 357 105.66 -171.35 REMARK 500 5 LYS A 367 115.96 -162.74 REMARK 500 5 ASN A 399 17.03 49.73 REMARK 500 6 ASP A 344 45.68 -95.35 REMARK 500 6 ASP A 358 -55.37 73.83 REMARK 500 6 SER A 362 43.46 -144.43 REMARK 500 6 GLN A 401 -91.58 -96.14 REMARK 500 6 GLU A 402 139.85 176.02 REMARK 500 6 MET A 405 104.83 -55.93 REMARK 500 7 GLU A 319 -73.61 -103.70 REMARK 500 7 ASP A 320 -14.20 67.69 REMARK 500 7 ASP A 344 44.18 -89.46 REMARK 500 7 MET A 355 23.59 -77.47 REMARK 500 7 LYS A 367 118.79 -164.29 REMARK 500 7 ASN A 399 22.31 46.71 REMARK 500 7 GLN A 425 70.27 63.91 REMARK 500 8 ASP A 320 46.21 -78.77 REMARK 500 8 GLU A 359 -70.12 -76.36 REMARK 500 8 LYS A 360 85.14 41.18 REMARK 500 8 SER A 362 71.08 72.11 REMARK 500 8 ASN A 399 18.16 52.41 REMARK 500 9 SER A 318 82.52 -157.70 REMARK 500 9 ASP A 320 4.90 56.52 REMARK 500 REMARK 500 THIS ENTRY HAS 148 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 346 0.09 SIDE CHAIN REMARK 500 3 ARG A 326 0.08 SIDE CHAIN REMARK 500 3 ARG A 419 0.09 SIDE CHAIN REMARK 500 8 ARG A 351 0.08 SIDE CHAIN REMARK 500 10 ARG A 351 0.09 SIDE CHAIN REMARK 500 11 ARG A 346 0.12 SIDE CHAIN REMARK 500 12 ARG A 382 0.08 SIDE CHAIN REMARK 500 13 ARG A 382 0.10 SIDE CHAIN REMARK 500 15 ARG A 335 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30100 RELATED DB: BMRB DBREF 5K6P A 319 451 UNP Q14896 MYPC3_HUMAN 319 451 SEQADV 5K6P GLY A 315 UNP Q14896 EXPRESSION TAG SEQADV 5K6P PRO A 316 UNP Q14896 EXPRESSION TAG SEQADV 5K6P GLY A 317 UNP Q14896 EXPRESSION TAG SEQADV 5K6P SER A 318 UNP Q14896 EXPRESSION TAG SEQRES 1 A 137 GLY PRO GLY SER GLU ASP VAL TRP GLU ILE LEU ARG GLN SEQRES 2 A 137 ALA PRO PRO SER GLU TYR GLU ARG ILE ALA PHE GLN TYR SEQRES 3 A 137 GLY VAL THR ASP LEU ARG GLY MET LEU LYS ARG LEU LYS SEQRES 4 A 137 GLY MET ARG ARG ASP GLU LYS LYS SER THR ALA PHE GLN SEQRES 5 A 137 LYS LYS LEU GLU PRO ALA TYR GLN VAL SER LYS GLY HIS SEQRES 6 A 137 LYS ILE ARG LEU THR VAL GLU LEU ALA ASP HIS ASP ALA SEQRES 7 A 137 GLU VAL LYS TRP LEU LYS ASN GLY GLN GLU ILE GLN MET SEQRES 8 A 137 SER GLY SER LYS TYR ILE PHE GLU SER ILE GLY ALA LYS SEQRES 9 A 137 ARG THR LEU THR ILE SER GLN CYS SER LEU ALA ASP ASP SEQRES 10 A 137 ALA ALA TYR GLN CYS VAL VAL GLY GLY GLU LYS CYS SER SEQRES 11 A 137 THR GLU LEU PHE VAL LYS GLU HELIX 1 AA1 ASP A 320 GLN A 327 1 8 HELIX 2 AA2 ALA A 328 SER A 331 5 4 HELIX 3 AA3 GLU A 332 TYR A 340 1 9 HELIX 4 AA4 ASP A 344 ARG A 356 1 13 SHEET 1 AA1 4 PHE A 365 LYS A 367 0 SHEET 2 AA1 4 HIS A 379 LEU A 387 -1 O GLU A 386 N GLN A 366 SHEET 3 AA1 4 LYS A 418 CYS A 426 -1 O ILE A 423 N ILE A 381 SHEET 4 AA1 4 TYR A 410 ILE A 415 -1 N GLU A 413 O THR A 420 SHEET 1 AA2 5 ALA A 372 SER A 376 0 SHEET 2 AA2 5 GLU A 441 LYS A 450 1 O LYS A 450 N VAL A 375 SHEET 3 AA2 5 ALA A 433 VAL A 438 -1 N VAL A 438 O GLU A 441 SHEET 4 AA2 5 LYS A 395 LYS A 398 -1 N LEU A 397 O GLN A 435 SHEET 5 AA2 5 GLN A 401 GLU A 402 -1 O GLN A 401 N LYS A 398 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1