HEADER CELL ADHESION 25-MAY-16 5K6U TITLE SIDEKICK-1 IMMUNOGLOBULIN DOMAINS 1-4, CRYSTAL FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SIDEKICK-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-TERMINAL RESIDUES GPALA ARE FROM THE EXPRESSION COMPND 6 CONSTRUCT AND WOULD BE CLEAVED IN THE NATIVE PROTEIN. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SDK1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CELL ADHESION, IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR X.JIN,K.M.GOODMAN,S.MANNEPALLI,B.HONIG,L.SHAPIRO REVDAT 2 29-JUL-20 5K6U 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 28-SEP-16 5K6U 0 JRNL AUTH K.M.GOODMAN,M.YAMAGATA,X.JIN,S.MANNEPALLI,P.S.KATSAMBA, JRNL AUTH 2 G.AHLSEN,A.P.SERGEEVA,B.HONIG,J.R.SANES,L.SHAPIRO JRNL TITL MOLECULAR BASIS OF SIDEKICK-MEDIATED CELL-CELL ADHESION AND JRNL TITL 2 SPECIFICITY. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27644106 JRNL DOI 10.7554/ELIFE.19058 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 22884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1920 - 4.4010 0.96 2715 151 0.1738 0.1972 REMARK 3 2 4.4010 - 3.4939 0.97 2669 158 0.1595 0.1941 REMARK 3 3 3.4939 - 3.0525 0.99 2760 118 0.1859 0.2080 REMARK 3 4 3.0525 - 2.7735 1.00 2730 146 0.1959 0.2513 REMARK 3 5 2.7735 - 2.5748 1.00 2713 157 0.2208 0.3057 REMARK 3 6 2.5748 - 2.4230 1.00 2725 154 0.2213 0.2369 REMARK 3 7 2.4230 - 2.3017 1.00 2704 157 0.2490 0.3207 REMARK 3 8 2.3017 - 2.2015 0.97 2693 134 0.2879 0.3386 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 37.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3081 REMARK 3 ANGLE : 0.880 4226 REMARK 3 CHIRALITY : 0.054 496 REMARK 3 PLANARITY : 0.005 542 REMARK 3 DIHEDRAL : 12.185 1143 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.9723 -22.0395 17.1615 REMARK 3 T TENSOR REMARK 3 T11: 0.2386 T22: 0.3280 REMARK 3 T33: 0.2466 T12: -0.0020 REMARK 3 T13: 0.0093 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 4.6042 L22: 2.1743 REMARK 3 L33: 2.3642 L12: -3.3388 REMARK 3 L13: 3.7559 L23: -1.5251 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: 0.3446 S13: 0.2244 REMARK 3 S21: 0.0271 S22: -0.0483 S23: -0.2963 REMARK 3 S31: 0.0413 S32: 0.0988 S33: 0.0715 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8689 -21.7923 18.2751 REMARK 3 T TENSOR REMARK 3 T11: 0.3065 T22: 0.1527 REMARK 3 T33: 0.1750 T12: 0.0393 REMARK 3 T13: 0.0068 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 8.7851 L22: 3.7383 REMARK 3 L33: 1.9347 L12: 4.0756 REMARK 3 L13: -0.8442 L23: -0.5456 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: 0.3918 S13: -0.3684 REMARK 3 S21: -0.2893 S22: 0.1719 S23: -0.1364 REMARK 3 S31: 0.0684 S32: -0.0175 S33: -0.0840 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3592 0.6673 18.7610 REMARK 3 T TENSOR REMARK 3 T11: 0.3515 T22: 0.2292 REMARK 3 T33: 0.6515 T12: 0.0261 REMARK 3 T13: 0.0341 T23: 0.0566 REMARK 3 L TENSOR REMARK 3 L11: 4.2664 L22: 1.3178 REMARK 3 L33: 1.9915 L12: 2.3326 REMARK 3 L13: 0.8316 L23: 0.2732 REMARK 3 S TENSOR REMARK 3 S11: -0.1456 S12: -0.0129 S13: 1.3310 REMARK 3 S21: 0.0146 S22: 0.0612 S23: 0.8694 REMARK 3 S31: -0.1312 S32: -0.3330 S33: 0.0689 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5371 -3.0736 6.3166 REMARK 3 T TENSOR REMARK 3 T11: 0.3157 T22: 0.2827 REMARK 3 T33: 0.2520 T12: -0.0276 REMARK 3 T13: 0.0630 T23: 0.0329 REMARK 3 L TENSOR REMARK 3 L11: 4.1061 L22: 3.2111 REMARK 3 L33: 3.8925 L12: -0.5828 REMARK 3 L13: 0.9943 L23: -0.3006 REMARK 3 S TENSOR REMARK 3 S11: 0.0480 S12: 0.0982 S13: 0.4422 REMARK 3 S21: -0.1875 S22: -0.2343 S23: -0.4775 REMARK 3 S31: -0.1828 S32: 0.1867 S33: 0.1667 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221714. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.7432 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22884 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12-16% (W/V) PEG4000, 0.2M AMMONIUM REMARK 280 CITRATE, BATCH MODE, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 81.53600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.63000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 81.53600 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.63000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -21.26739 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 56.88223 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 ALA A -2 REMARK 465 LEU A -1 REMARK 465 ALA A 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 2 CG OD1 OD2 REMARK 470 LYS A 9 CD CE NZ REMARK 470 GLU A 11 CG CD OE1 OE2 REMARK 470 GLN A 16 CG CD OE1 NE2 REMARK 470 MET A 96 CG SD CE REMARK 470 GLN A 124 CG CD OE1 NE2 REMARK 470 GLU A 130 CD OE1 OE2 REMARK 470 GLU A 145 CD OE1 OE2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 274 CG CD OE1 OE2 REMARK 470 ARG A 279 NE CZ NH1 NH2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 LYS A 338 CD CE NZ REMARK 470 LYS A 349 CG CD CE NZ REMARK 470 ASN A 379 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 522 O HOH A 621 1.81 REMARK 500 OE1 GLU A 191 O HOH A 501 2.00 REMARK 500 O HOH A 547 O HOH A 625 2.12 REMARK 500 O ILE A 135 O HOH A 502 2.13 REMARK 500 O HOH A 630 O HOH A 633 2.17 REMARK 500 NH2 ARG A 83 O HOH A 503 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 599 O HOH A 629 2555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 75 -167.64 -129.54 REMARK 500 PRO A 177 -173.88 -69.47 REMARK 500 ALA A 292 118.53 -161.64 REMARK 500 GLU A 303 -5.34 81.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 411 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO A 294 O REMARK 620 2 THR A 371 OG1 99.3 REMARK 620 3 HIS A 372 O 102.2 81.7 REMARK 620 4 HOH A 636 O 168.7 69.7 74.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K6W RELATED DB: PDB REMARK 900 RELATED ID: 5K6U RELATED DB: PDB REMARK 900 RELATED ID: 5K6X RELATED DB: PDB REMARK 900 RELATED ID: 5K6Y RELATED DB: PDB REMARK 900 RELATED ID: 5K6Z RELATED DB: PDB REMARK 900 RELATED ID: 5K70 RELATED DB: PDB DBREF 5K6U A -2 379 UNP Q3UH53 SDK1_MOUSE 78 459 SEQADV 5K6U GLY A -4 UNP Q3UH53 EXPRESSION TAG SEQADV 5K6U PRO A -3 UNP Q3UH53 EXPRESSION TAG SEQRES 1 A 384 GLY PRO ALA LEU ALA GLN ASP ASP VAL ALA PRO TYR PHE SEQRES 2 A 384 LYS THR GLU PRO GLY LEU PRO GLN ILE HIS LEU GLU GLY SEQRES 3 A 384 ASN ARG LEU VAL LEU THR CYS LEU ALA GLU GLY SER TRP SEQRES 4 A 384 PRO LEU GLU PHE LYS TRP ILE ARG ASN ASP SER GLU LEU SEQRES 5 A 384 THR THR TYR SER SER GLU TYR LYS TYR ILE ILE PRO SER SEQRES 6 A 384 LEU GLN LYS LEU ASP ALA GLY PHE TYR ARG CYS VAL VAL SEQRES 7 A 384 ARG ASN ARG MET GLY ALA LEU LEU GLN ARG LYS SER GLU SEQRES 8 A 384 ILE GLN VAL ALA TYR MET GLY ASN PHE MET ASP THR ASP SEQRES 9 A 384 GLN ARG LYS THR VAL SER GLN GLY HIS ALA ALA LEU LEU SEQRES 10 A 384 ASN LEU LEU PRO ILE VAL SER CYS PRO GLN PRO GLN VAL SEQRES 11 A 384 THR TRP PHE ARG GLU GLY HIS LYS ILE ILE PRO SER SER SEQRES 12 A 384 ARG ILE ALA ILE THR LEU GLU ASN GLN LEU VAL ILE LEU SEQRES 13 A 384 ALA THR THR ALA SER ASP ALA GLY ALA TYR TYR VAL GLN SEQRES 14 A 384 ALA VAL ASN GLU LYS ASN GLY GLU ASN LYS THR SER PRO SEQRES 15 A 384 PHE ILE HIS LEU SER VAL ALA ARG ASP THR GLY THR HIS SEQRES 16 A 384 GLU ALA MET ALA PRO ILE ILE VAL VAL ALA PRO GLY ASN SEQRES 17 A 384 ARG SER VAL VAL ALA GLY SER SER GLU THR THR LEU GLU SEQRES 18 A 384 CYS ILE ALA ASN ALA ARG PRO VAL GLU GLU LEU SER VAL SEQRES 19 A 384 HIS TRP LYS ARG ASN GLY VAL ARG LEU THR SER GLY LEU SEQRES 20 A 384 HIS SER TYR GLY ARG ARG LEU THR ILE THR ASN PRO THR SEQRES 21 A 384 SER ALA ASP THR GLY MET TYR VAL CYS GLU ALA THR LEU SEQRES 22 A 384 ARG GLY SER THR PHE GLU PRO ALA ARG ALA ARG ALA PHE SEQRES 23 A 384 LEU SER ILE ILE GLU PRO PRO TYR PHE THR ALA GLU PRO SEQRES 24 A 384 GLU SER ARG ILE LEU GLY GLU VAL GLU GLU THR MET ASP SEQRES 25 A 384 ILE PRO CYS ARG ALA MET GLY VAL PRO LEU PRO THR LEU SEQRES 26 A 384 GLN TRP TYR LYS ASP ALA VAL PRO LEU SER LYS LEU GLN SEQRES 27 A 384 ASN PRO ARG TYR LYS VAL LEU PRO SER GLY GLY LEU HIS SEQRES 28 A 384 ILE GLN LYS LEU SER PRO GLU ASP SER GLY ILE PHE GLN SEQRES 29 A 384 CYS PHE ALA SER ASN GLU GLY GLY GLU VAL GLN THR HIS SEQRES 30 A 384 THR TYR LEU ASP VAL THR ASN HET NAG B 1 14 HET NAG B 2 14 HET NAG C 1 14 HET NAG C 2 14 HET IOD A 405 1 HET IOD A 406 1 HET IOD A 407 1 HET IOD A 408 1 HET IOD A 409 1 HET IOD A 410 1 HET CS A 411 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM IOD IODIDE ION HETNAM CS CESIUM ION FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 4 IOD 6(I 1-) FORMUL 10 CS CS 1+ FORMUL 11 HOH *148(H2 O) HELIX 1 AA1 GLN A 62 ALA A 66 5 5 HELIX 2 AA2 THR A 154 ALA A 158 5 5 HELIX 3 AA3 PRO A 223 GLU A 225 5 3 HELIX 4 AA4 THR A 255 THR A 259 5 5 HELIX 5 AA5 LEU A 329 GLN A 333 1 5 HELIX 6 AA6 SER A 351 SER A 355 5 5 SHEET 1 AA1 2 TYR A 7 PHE A 8 0 SHEET 2 AA1 2 ALA A 30 GLU A 31 -1 O GLU A 31 N TYR A 7 SHEET 1 AA2 4 GLN A 16 LEU A 19 0 SHEET 2 AA2 4 SER A 85 MET A 92 1 O ALA A 90 N HIS A 18 SHEET 3 AA2 4 GLY A 67 ASN A 75 -1 N TYR A 69 O SER A 85 SHEET 4 AA2 4 GLY A 78 LEU A 81 -1 O LEU A 80 N VAL A 73 SHEET 1 AA3 5 SER A 45 GLU A 46 0 SHEET 2 AA3 5 GLU A 37 ARG A 42 -1 N ARG A 42 O SER A 45 SHEET 3 AA3 5 GLY A 67 ASN A 75 -1 O ARG A 74 N GLU A 37 SHEET 4 AA3 5 SER A 85 MET A 92 -1 O SER A 85 N TYR A 69 SHEET 5 AA3 5 SER A 119 CYS A 120 -1 O CYS A 120 N TYR A 91 SHEET 1 AA4 2 LEU A 24 THR A 27 0 SHEET 2 AA4 2 LYS A 55 ILE A 58 -1 O TYR A 56 N LEU A 26 SHEET 1 AA5 5 GLN A 100 SER A 105 0 SHEET 2 AA5 5 ILE A 179 ALA A 184 1 O SER A 182 N LYS A 102 SHEET 3 AA5 5 GLY A 159 VAL A 166 -1 N TYR A 161 O ILE A 179 SHEET 4 AA5 5 GLN A 124 ARG A 129 -1 N PHE A 128 O TYR A 162 SHEET 5 AA5 5 HIS A 132 LYS A 133 -1 O HIS A 132 N ARG A 129 SHEET 1 AA6 4 GLN A 100 SER A 105 0 SHEET 2 AA6 4 ILE A 179 ALA A 184 1 O SER A 182 N LYS A 102 SHEET 3 AA6 4 GLY A 159 VAL A 166 -1 N TYR A 161 O ILE A 179 SHEET 4 AA6 4 ASN A 173 THR A 175 -1 O LYS A 174 N ALA A 165 SHEET 1 AA7 3 ALA A 110 LEU A 112 0 SHEET 2 AA7 3 LEU A 148 ILE A 150 -1 O LEU A 148 N LEU A 112 SHEET 3 AA7 3 ILE A 140 ILE A 142 -1 N ALA A 141 O VAL A 149 SHEET 1 AA8 2 MET A 193 VAL A 199 0 SHEET 2 AA8 2 ILE A 218 ARG A 222 -1 O ASN A 220 N ILE A 196 SHEET 1 AA9 5 ARG A 204 VAL A 207 0 SHEET 2 AA9 5 ALA A 276 ALA A 292 1 O PHE A 281 N ARG A 204 SHEET 3 AA9 5 GLY A 260 LEU A 268 -1 N TYR A 262 O ALA A 280 SHEET 4 AA9 5 LEU A 227 ARG A 233 -1 N LYS A 232 O VAL A 263 SHEET 5 AA9 5 VAL A 236 ARG A 237 -1 O VAL A 236 N ARG A 233 SHEET 1 AB1 3 ARG A 204 VAL A 207 0 SHEET 2 AB1 3 ALA A 276 ALA A 292 1 O PHE A 281 N ARG A 204 SHEET 3 AB1 3 ARG A 311 VAL A 315 -1 O ARG A 311 N THR A 291 SHEET 1 AB2 3 GLU A 212 GLU A 216 0 SHEET 2 AB2 3 ARG A 248 THR A 252 -1 O LEU A 249 N LEU A 215 SHEET 3 AB2 3 LEU A 242 HIS A 243 -1 N HIS A 243 O ARG A 248 SHEET 1 AB3 5 ARG A 297 GLU A 301 0 SHEET 2 AB3 5 GLY A 367 THR A 378 1 O ASP A 376 N GLY A 300 SHEET 3 AB3 5 GLY A 356 ASN A 364 -1 N GLY A 356 O LEU A 375 SHEET 4 AB3 5 THR A 319 LYS A 324 -1 N TYR A 323 O GLN A 359 SHEET 5 AB3 5 VAL A 327 PRO A 328 -1 O VAL A 327 N LYS A 324 SHEET 1 AB4 3 MET A 306 ILE A 308 0 SHEET 2 AB4 3 LEU A 345 ILE A 347 -1 O LEU A 345 N ILE A 308 SHEET 3 AB4 3 TYR A 337 VAL A 339 -1 N LYS A 338 O HIS A 346 SSBOND 1 CYS A 28 CYS A 71 1555 1555 2.04 SSBOND 2 CYS A 217 CYS A 264 1555 1555 2.07 SSBOND 3 CYS A 310 CYS A 360 1555 1555 2.07 LINK ND2 ASN A 43 C1 NAG B 1 1555 1555 1.43 LINK ND2 ASN A 203 C1 NAG C 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O PRO A 294 CS CS A 411 1555 1555 2.94 LINK OG1 THR A 371 CS CS A 411 1555 1555 3.33 LINK O HIS A 372 CS CS A 411 1555 1555 3.10 LINK CS CS A 411 O HOH A 636 1555 1555 3.36 CISPEP 1 TRP A 34 PRO A 35 0 -4.18 CISPEP 2 CYS A 120 PRO A 121 0 -7.12 CISPEP 3 ARG A 222 PRO A 223 0 0.32 CISPEP 4 VAL A 315 PRO A 316 0 -1.15 CRYST1 163.072 49.260 60.728 90.00 110.50 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006132 0.000000 0.002293 0.00000 SCALE2 0.000000 0.020300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017580 0.00000