HEADER CELL ADHESION 25-MAY-16 5K6X TITLE SIDEKICK-2 IMMUNOGLOBULIN DOMAINS 1-4, CRYSTAL FORM 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SIDEKICK-2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: N-TERMINAL RESIDUES GPAGA ARE EXPRESSION CONSTRUCT COMPND 6 DERIVED AND WOULD BE CLEAVED IN THE NATIVE PROTEIN. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SDK2, KIAA1514; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CELL ADHESION, IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR K.M.GOODMAN,S.MANNEPALLI,B.HONIG,L.SHAPIRO REVDAT 4 16-OCT-24 5K6X 1 REMARK REVDAT 3 03-APR-24 5K6X 1 HETSYN LINK REVDAT 2 29-JUL-20 5K6X 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 28-SEP-16 5K6X 0 JRNL AUTH K.M.GOODMAN,M.YAMAGATA,X.JIN,S.MANNEPALLI,P.S.KATSAMBA, JRNL AUTH 2 G.AHLSEN,A.P.SERGEEVA,B.HONIG,J.R.SANES,L.SHAPIRO JRNL TITL MOLECULAR BASIS OF SIDEKICK-MEDIATED CELL-CELL ADHESION AND JRNL TITL 2 SPECIFICITY. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27644106 JRNL DOI 10.7554/ELIFE.19058 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 29407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1486 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0064 - 5.9984 0.98 2562 140 0.2021 0.2279 REMARK 3 2 5.9984 - 4.7638 0.99 2551 145 0.1755 0.1891 REMARK 3 3 4.7638 - 4.1624 0.99 2559 119 0.1536 0.1813 REMARK 3 4 4.1624 - 3.7822 0.99 2539 161 0.1669 0.2137 REMARK 3 5 3.7822 - 3.5113 0.99 2540 128 0.1879 0.2198 REMARK 3 6 3.5113 - 3.3044 0.99 2552 129 0.1959 0.2391 REMARK 3 7 3.3044 - 3.1390 0.99 2496 141 0.2078 0.2972 REMARK 3 8 3.1390 - 3.0024 0.99 2539 139 0.2228 0.2615 REMARK 3 9 3.0024 - 2.8868 0.99 2517 126 0.2408 0.2959 REMARK 3 10 2.8868 - 2.7872 0.98 2541 129 0.2606 0.3055 REMARK 3 11 2.7872 - 2.7001 0.98 2525 129 0.2756 0.3332 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5947 REMARK 3 ANGLE : 0.705 8130 REMARK 3 CHIRALITY : 0.026 947 REMARK 3 PLANARITY : 0.003 1038 REMARK 3 DIHEDRAL : 12.372 2149 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9131 31.9752 13.8006 REMARK 3 T TENSOR REMARK 3 T11: 0.4506 T22: 0.3400 REMARK 3 T33: 0.2904 T12: -0.0998 REMARK 3 T13: -0.0044 T23: -0.0362 REMARK 3 L TENSOR REMARK 3 L11: 6.0601 L22: 3.0432 REMARK 3 L33: 3.8631 L12: 0.9541 REMARK 3 L13: 2.8116 L23: 0.8801 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: -0.2813 S13: 0.3677 REMARK 3 S21: 0.2371 S22: -0.1403 S23: -0.0258 REMARK 3 S31: -0.4203 S32: 0.0231 S33: 0.1739 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.2570 27.2672 -25.2734 REMARK 3 T TENSOR REMARK 3 T11: 0.4868 T22: 0.5880 REMARK 3 T33: 0.3898 T12: 0.0357 REMARK 3 T13: -0.0373 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 2.3260 L22: 1.5996 REMARK 3 L33: 2.5051 L12: -0.1927 REMARK 3 L13: 1.9617 L23: -1.3034 REMARK 3 S TENSOR REMARK 3 S11: -0.0968 S12: 0.1215 S13: 0.0270 REMARK 3 S21: 0.0138 S22: 0.1268 S23: 0.0676 REMARK 3 S31: -0.7614 S32: -0.2741 S33: -0.0105 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 286 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9704 42.9428 10.5828 REMARK 3 T TENSOR REMARK 3 T11: 0.6542 T22: 0.4495 REMARK 3 T33: 0.4895 T12: -0.1476 REMARK 3 T13: -0.1072 T23: -0.0265 REMARK 3 L TENSOR REMARK 3 L11: 1.4277 L22: 1.7931 REMARK 3 L33: 1.6991 L12: -0.2023 REMARK 3 L13: -0.2680 L23: 0.1523 REMARK 3 S TENSOR REMARK 3 S11: -0.1306 S12: 0.1918 S13: 0.0470 REMARK 3 S21: 0.0661 S22: 0.2455 S23: -0.2480 REMARK 3 S31: -0.1448 S32: 0.4456 S33: -0.1008 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 2 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7926 8.8644 -8.7077 REMARK 3 T TENSOR REMARK 3 T11: 0.3536 T22: 0.3386 REMARK 3 T33: 0.3778 T12: -0.0698 REMARK 3 T13: -0.0321 T23: -0.0571 REMARK 3 L TENSOR REMARK 3 L11: 1.5801 L22: 2.9358 REMARK 3 L33: 6.6437 L12: 0.2440 REMARK 3 L13: -0.4833 L23: 0.9237 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 0.2263 S13: -0.1131 REMARK 3 S21: -0.0225 S22: 0.0179 S23: 0.0572 REMARK 3 S31: 0.5996 S32: -0.1345 S33: 0.0267 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.6065 14.5246 26.5485 REMARK 3 T TENSOR REMARK 3 T11: 0.4245 T22: 0.4504 REMARK 3 T33: 0.3597 T12: -0.1026 REMARK 3 T13: -0.0060 T23: 0.0829 REMARK 3 L TENSOR REMARK 3 L11: 4.9945 L22: 1.7177 REMARK 3 L33: 4.0982 L12: -0.3643 REMARK 3 L13: 3.4618 L23: 0.2907 REMARK 3 S TENSOR REMARK 3 S11: 0.2537 S12: -0.4169 S13: -0.5811 REMARK 3 S21: 0.2341 S22: -0.0059 S23: -0.0019 REMARK 3 S31: 0.1392 S32: -0.2043 S33: -0.2423 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 193 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4374 19.2461 10.0466 REMARK 3 T TENSOR REMARK 3 T11: 0.3459 T22: 0.3569 REMARK 3 T33: 0.3861 T12: -0.0295 REMARK 3 T13: 0.0281 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 4.9907 L22: 3.0576 REMARK 3 L33: 6.5248 L12: 0.0516 REMARK 3 L13: -1.2642 L23: 1.0075 REMARK 3 S TENSOR REMARK 3 S11: -0.0049 S12: 0.0994 S13: -0.0108 REMARK 3 S21: -0.1597 S22: -0.0481 S23: -0.1082 REMARK 3 S31: -0.3470 S32: -0.3051 S33: 0.0474 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 286 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.7136 2.9436 -21.7488 REMARK 3 T TENSOR REMARK 3 T11: 0.5462 T22: 0.6248 REMARK 3 T33: 0.4694 T12: 0.0226 REMARK 3 T13: -0.0507 T23: -0.1171 REMARK 3 L TENSOR REMARK 3 L11: 1.5807 L22: 0.9473 REMARK 3 L33: 1.6535 L12: 0.1633 REMARK 3 L13: 0.5411 L23: -0.4295 REMARK 3 S TENSOR REMARK 3 S11: -0.1771 S12: 0.3759 S13: 0.0170 REMARK 3 S21: -0.5041 S22: 0.2120 S23: -0.1741 REMARK 3 S31: 0.0413 S32: 0.4675 S33: -0.1264 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 192 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9621 27.7808 -28.3601 REMARK 3 T TENSOR REMARK 3 T11: 0.7043 T22: 1.0194 REMARK 3 T33: 0.5570 T12: -0.1610 REMARK 3 T13: -0.1417 T23: -0.1248 REMARK 3 L TENSOR REMARK 3 L11: 3.8977 L22: 3.2219 REMARK 3 L33: 1.0730 L12: 1.1193 REMARK 3 L13: -0.1200 L23: 0.6216 REMARK 3 S TENSOR REMARK 3 S11: -0.1325 S12: 0.8913 S13: -0.1141 REMARK 3 S21: -0.1080 S22: 0.1104 S23: -0.4770 REMARK 3 S31: -0.4708 S32: 0.7996 S33: -0.0113 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221717. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29407 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.48700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: SDK1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 CITRATE PH4, BATCH MODE, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 65.00500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -129.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 GLY A 187 REMARK 465 GLY A 188 REMARK 465 PRO A 189 REMARK 465 ALA A 190 REMARK 465 ASP A 191 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 ALA B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 GLN B 1 REMARK 465 VAL B 186 REMARK 465 GLY B 187 REMARK 465 GLY B 188 REMARK 465 PRO B 189 REMARK 465 ALA B 190 REMARK 465 ASP B 191 REMARK 465 PRO B 192 REMARK 465 GLY B 332 REMARK 465 LYS B 333 REMARK 465 LEU B 334 REMARK 465 SER B 379 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 1 CG CD OE1 NE2 REMARK 470 ASP A 2 CG OD1 OD2 REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 52 CG CD1 CD2 REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 108 CG CD OE1 OE2 REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 122 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 186 CG1 CG2 REMARK 470 ARG A 222 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 224 CG CD1 CD2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 ARG A 278 CD NE CZ NH1 NH2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 GLU A 303 CG CD OE1 OE2 REMARK 470 LYS A 304 CG CD CE NZ REMARK 470 ARG A 311 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 333 CE NZ REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 ASP B 2 CG OD1 OD2 REMARK 470 LYS B 100 CE NZ REMARK 470 ARG B 101 NE CZ NH1 NH2 REMARK 470 LYS B 174 CE NZ REMARK 470 LYS B 202 CE NZ REMARK 470 ARG B 292 CD NE CZ NH1 NH2 REMARK 470 GLU B 301 CG CD OE1 OE2 REMARK 470 GLU B 303 CG CD OE1 OE2 REMARK 470 LYS B 304 CG CD CE NZ REMARK 470 GLU B 330 CG CD OE1 OE2 REMARK 470 LYS B 338 CG CD CE NZ REMARK 470 ARG B 340 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL B 207 OG1 THR B 210 2.15 REMARK 500 O VAL A 207 OG1 THR A 210 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 75 -156.17 -150.66 REMARK 500 SER A 211 -22.45 81.72 REMARK 500 CYS A 310 100.92 -165.29 REMARK 500 ASN B 75 -155.59 -150.37 REMARK 500 SER B 211 -24.43 82.63 REMARK 500 CYS B 310 100.90 -165.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K6U RELATED DB: PDB REMARK 900 RELATED ID: 5K6V RELATED DB: PDB REMARK 900 RELATED ID: 5K6W RELATED DB: PDB REMARK 900 RELATED ID: 5K6Y RELATED DB: PDB REMARK 900 RELATED ID: 5K6Z RELATED DB: PDB REMARK 900 RELATED ID: 5K70 RELATED DB: PDB DBREF 5K6X A -2 379 UNP Q6V4S5 SDK2_MOUSE 22 403 DBREF 5K6X B -2 379 UNP Q6V4S5 SDK2_MOUSE 22 403 SEQADV 5K6X GLY A -4 UNP Q6V4S5 EXPRESSION TAG SEQADV 5K6X PRO A -3 UNP Q6V4S5 EXPRESSION TAG SEQADV 5K6X GLY B -4 UNP Q6V4S5 EXPRESSION TAG SEQADV 5K6X PRO B -3 UNP Q6V4S5 EXPRESSION TAG SEQRES 1 A 384 GLY PRO ALA GLY ALA GLN ASP ASP VAL PRO PRO TYR PHE SEQRES 2 A 384 LYS THR GLU PRO VAL ARG THR GLN VAL HIS LEU GLU GLY SEQRES 3 A 384 ASN ARG LEU VAL LEU THR CYS MET ALA GLU GLY SER TRP SEQRES 4 A 384 PRO LEU GLU PHE LYS TRP LEU HIS ASN ASN ARG GLU LEU SEQRES 5 A 384 THR ARG PHE SER LEU GLU TYR ARG TYR MET ILE THR SER SEQRES 6 A 384 LEU ASP ARG THR HIS ALA GLY PHE TYR ARG CYS ILE VAL SEQRES 7 A 384 ARG ASN ARG MET GLY ALA LEU LEU GLN ARG GLN THR GLU SEQRES 8 A 384 VAL GLN VAL ALA TYR MET GLY SER PHE GLU GLU GLY GLU SEQRES 9 A 384 LYS ARG GLN SER VAL ASN HIS GLY GLU ALA ALA VAL ILE SEQRES 10 A 384 ARG ALA PRO ARG ILE SER SER PHE PRO ARG PRO GLN VAL SEQRES 11 A 384 THR TRP PHE ARG ASP GLY ARG LYS ILE PRO PRO SER SER SEQRES 12 A 384 ARG ILE ALA ILE THR LEU GLU ASN THR LEU VAL ILE LEU SEQRES 13 A 384 SER THR VAL ALA PRO ASP ALA GLY ARG TYR TYR VAL GLN SEQRES 14 A 384 ALA VAL ASN ASP LYS ASN GLY ASP ASN LYS THR SER GLN SEQRES 15 A 384 PRO ILE THR LEU ALA VAL GLU ASN VAL GLY GLY PRO ALA SEQRES 16 A 384 ASP PRO ILE ALA PRO THR ILE ILE ILE PRO PRO LYS ASN SEQRES 17 A 384 THR SER VAL VAL ALA GLY THR SER GLU VAL THR MET GLU SEQRES 18 A 384 CYS VAL ALA ASN ALA ARG PRO LEU ILE LYS LEU HIS ILE SEQRES 19 A 384 VAL TRP LYS LYS ASP GLY ALA PRO LEU SER SER GLY ILE SEQRES 20 A 384 SER ASP TYR ASN ARG ARG LEU THR ILE ALA ASN PRO THR SEQRES 21 A 384 VAL SER ASP ALA GLY TYR TYR GLU CYS GLU ALA MET LEU SEQRES 22 A 384 ARG SER SER SER VAL ALA PRO VAL THR ARG GLY ALA TYR SEQRES 23 A 384 LEU SER VAL LEU GLU PRO PRO GLN PHE VAL ARG GLU PRO SEQRES 24 A 384 GLU ARG HIS ILE THR ALA GLU MET GLU LYS VAL VAL ASP SEQRES 25 A 384 ILE PRO CYS ARG ALA LYS GLY VAL PRO PRO PRO SER ILE SEQRES 26 A 384 THR TRP TYR LYS ASP ALA ALA LEU VAL GLU VAL GLY LYS SEQRES 27 A 384 LEU THR ARG PHE LYS GLN ARG SER ASP GLY GLY LEU GLN SEQRES 28 A 384 ILE SER GLY LEU LEU PRO ASP ASP THR GLY MET LEU GLN SEQRES 29 A 384 CYS PHE ALA HIS ASN ALA ALA GLY GLU ALA GLN THR SER SEQRES 30 A 384 THR TYR LEU ALA VAL THR SER SEQRES 1 B 384 GLY PRO ALA GLY ALA GLN ASP ASP VAL PRO PRO TYR PHE SEQRES 2 B 384 LYS THR GLU PRO VAL ARG THR GLN VAL HIS LEU GLU GLY SEQRES 3 B 384 ASN ARG LEU VAL LEU THR CYS MET ALA GLU GLY SER TRP SEQRES 4 B 384 PRO LEU GLU PHE LYS TRP LEU HIS ASN ASN ARG GLU LEU SEQRES 5 B 384 THR ARG PHE SER LEU GLU TYR ARG TYR MET ILE THR SER SEQRES 6 B 384 LEU ASP ARG THR HIS ALA GLY PHE TYR ARG CYS ILE VAL SEQRES 7 B 384 ARG ASN ARG MET GLY ALA LEU LEU GLN ARG GLN THR GLU SEQRES 8 B 384 VAL GLN VAL ALA TYR MET GLY SER PHE GLU GLU GLY GLU SEQRES 9 B 384 LYS ARG GLN SER VAL ASN HIS GLY GLU ALA ALA VAL ILE SEQRES 10 B 384 ARG ALA PRO ARG ILE SER SER PHE PRO ARG PRO GLN VAL SEQRES 11 B 384 THR TRP PHE ARG ASP GLY ARG LYS ILE PRO PRO SER SER SEQRES 12 B 384 ARG ILE ALA ILE THR LEU GLU ASN THR LEU VAL ILE LEU SEQRES 13 B 384 SER THR VAL ALA PRO ASP ALA GLY ARG TYR TYR VAL GLN SEQRES 14 B 384 ALA VAL ASN ASP LYS ASN GLY ASP ASN LYS THR SER GLN SEQRES 15 B 384 PRO ILE THR LEU ALA VAL GLU ASN VAL GLY GLY PRO ALA SEQRES 16 B 384 ASP PRO ILE ALA PRO THR ILE ILE ILE PRO PRO LYS ASN SEQRES 17 B 384 THR SER VAL VAL ALA GLY THR SER GLU VAL THR MET GLU SEQRES 18 B 384 CYS VAL ALA ASN ALA ARG PRO LEU ILE LYS LEU HIS ILE SEQRES 19 B 384 VAL TRP LYS LYS ASP GLY ALA PRO LEU SER SER GLY ILE SEQRES 20 B 384 SER ASP TYR ASN ARG ARG LEU THR ILE ALA ASN PRO THR SEQRES 21 B 384 VAL SER ASP ALA GLY TYR TYR GLU CYS GLU ALA MET LEU SEQRES 22 B 384 ARG SER SER SER VAL ALA PRO VAL THR ARG GLY ALA TYR SEQRES 23 B 384 LEU SER VAL LEU GLU PRO PRO GLN PHE VAL ARG GLU PRO SEQRES 24 B 384 GLU ARG HIS ILE THR ALA GLU MET GLU LYS VAL VAL ASP SEQRES 25 B 384 ILE PRO CYS ARG ALA LYS GLY VAL PRO PRO PRO SER ILE SEQRES 26 B 384 THR TRP TYR LYS ASP ALA ALA LEU VAL GLU VAL GLY LYS SEQRES 27 B 384 LEU THR ARG PHE LYS GLN ARG SER ASP GLY GLY LEU GLN SEQRES 28 B 384 ILE SER GLY LEU LEU PRO ASP ASP THR GLY MET LEU GLN SEQRES 29 B 384 CYS PHE ALA HIS ASN ALA ALA GLY GLU ALA GLN THR SER SEQRES 30 B 384 THR TYR LEU ALA VAL THR SER HET NAG C 1 14 HET FUC C 2 10 HET NAG D 1 14 HET NAG D 2 14 HET FUC D 3 10 HET NAG A 501 14 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET SO4 A 509 5 HET SO4 A 510 5 HET SO4 A 511 5 HET GOL A 512 6 HET NAG B 501 14 HET SO4 B 505 5 HET SO4 B 506 5 HET SO4 B 507 5 HET SO4 B 508 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 5(C8 H15 N O6) FORMUL 3 FUC 2(C6 H12 O5) FORMUL 6 SO4 12(O4 S 2-) FORMUL 14 GOL C3 H8 O3 FORMUL 20 HOH *38(H2 O) HELIX 1 AA1 ASP A 62 ALA A 66 5 5 HELIX 2 AA2 VAL A 154 ALA A 158 5 5 HELIX 3 AA3 PRO A 223 ILE A 225 5 3 HELIX 4 AA4 THR A 255 ALA A 259 5 5 HELIX 5 AA5 LEU A 351 THR A 355 5 5 HELIX 6 AA6 ASP B 62 ALA B 66 5 5 HELIX 7 AA7 VAL B 154 ALA B 158 5 5 HELIX 8 AA8 PRO B 223 ILE B 225 5 3 HELIX 9 AA9 THR B 255 ALA B 259 5 5 HELIX 10 AB1 LEU B 351 THR B 355 5 5 SHEET 1 AA1 2 TYR A 7 PHE A 8 0 SHEET 2 AA1 2 ALA A 30 GLU A 31 -1 O GLU A 31 N TYR A 7 SHEET 1 AA2 4 THR A 15 LEU A 19 0 SHEET 2 AA2 4 THR A 85 PHE A 95 1 O ALA A 90 N HIS A 18 SHEET 3 AA2 4 GLY A 67 ARG A 74 -1 N TYR A 69 O THR A 85 SHEET 4 AA2 4 ALA A 79 LEU A 81 -1 O LEU A 80 N VAL A 73 SHEET 1 AA3 5 ARG A 45 GLU A 46 0 SHEET 2 AA3 5 GLU A 37 HIS A 42 -1 N HIS A 42 O ARG A 45 SHEET 3 AA3 5 GLY A 67 ARG A 74 -1 O ILE A 72 N LYS A 39 SHEET 4 AA3 5 THR A 85 PHE A 95 -1 O THR A 85 N TYR A 69 SHEET 5 AA3 5 ILE A 117 PHE A 120 -1 O SER A 118 N GLY A 93 SHEET 1 AA4 2 LEU A 24 THR A 27 0 SHEET 2 AA4 2 ARG A 55 ILE A 58 -1 O TYR A 56 N LEU A 26 SHEET 1 AA5 5 LYS A 100 ASN A 105 0 SHEET 2 AA5 5 ILE A 179 GLU A 184 1 O GLU A 184 N VAL A 104 SHEET 3 AA5 5 GLY A 159 VAL A 166 -1 N TYR A 161 O ILE A 179 SHEET 4 AA5 5 GLN A 124 ARG A 129 -1 N THR A 126 O GLN A 164 SHEET 5 AA5 5 ARG A 132 LYS A 133 -1 O ARG A 132 N ARG A 129 SHEET 1 AA6 4 LYS A 100 ASN A 105 0 SHEET 2 AA6 4 ILE A 179 GLU A 184 1 O GLU A 184 N VAL A 104 SHEET 3 AA6 4 GLY A 159 VAL A 166 -1 N TYR A 161 O ILE A 179 SHEET 4 AA6 4 ASN A 173 THR A 175 -1 O LYS A 174 N ALA A 165 SHEET 1 AA7 3 ALA A 110 ILE A 112 0 SHEET 2 AA7 3 LEU A 148 ILE A 150 -1 O LEU A 148 N ILE A 112 SHEET 3 AA7 3 ILE A 140 ILE A 142 -1 N ALA A 141 O VAL A 149 SHEET 1 AA8 2 THR A 196 ILE A 199 0 SHEET 2 AA8 2 VAL A 218 ASN A 220 -1 O ASN A 220 N THR A 196 SHEET 1 AA9 5 THR A 204 VAL A 207 0 SHEET 2 AA9 5 VAL A 276 ARG A 292 1 O LEU A 285 N VAL A 206 SHEET 3 AA9 5 GLY A 260 LEU A 268 -1 N CYS A 264 O ARG A 278 SHEET 4 AA9 5 LEU A 227 LYS A 233 -1 N HIS A 228 O MET A 267 SHEET 5 AA9 5 ALA A 236 PRO A 237 -1 O ALA A 236 N LYS A 233 SHEET 1 AB1 3 THR A 204 VAL A 207 0 SHEET 2 AB1 3 VAL A 276 ARG A 292 1 O LEU A 285 N VAL A 206 SHEET 3 AB1 3 ARG A 311 VAL A 315 -1 O LYS A 313 N GLN A 289 SHEET 1 AB2 3 GLU A 212 GLU A 216 0 SHEET 2 AB2 3 ARG A 248 ALA A 252 -1 O LEU A 249 N MET A 215 SHEET 3 AB2 3 ILE A 242 SER A 243 -1 N SER A 243 O ARG A 248 SHEET 1 AB3 5 HIS A 297 GLU A 301 0 SHEET 2 AB3 5 GLU A 368 THR A 378 1 O TYR A 374 N ILE A 298 SHEET 3 AB3 5 GLY A 356 HIS A 363 -1 N CYS A 360 O THR A 371 SHEET 4 AB3 5 SER A 319 LYS A 324 -1 N THR A 321 O PHE A 361 SHEET 5 AB3 5 ALA A 327 LEU A 328 -1 O ALA A 327 N LYS A 324 SHEET 1 AB4 3 VAL A 306 ILE A 308 0 SHEET 2 AB4 3 LEU A 345 ILE A 347 -1 O LEU A 345 N ILE A 308 SHEET 3 AB4 3 PHE A 337 GLN A 339 -1 N LYS A 338 O GLN A 346 SHEET 1 AB5 2 TYR B 7 PHE B 8 0 SHEET 2 AB5 2 ALA B 30 GLU B 31 -1 O GLU B 31 N TYR B 7 SHEET 1 AB6 4 THR B 15 LEU B 19 0 SHEET 2 AB6 4 THR B 85 PHE B 95 1 O GLN B 88 N GLN B 16 SHEET 3 AB6 4 GLY B 67 ARG B 74 -1 N GLY B 67 O VAL B 87 SHEET 4 AB6 4 ALA B 79 LEU B 81 -1 O LEU B 80 N VAL B 73 SHEET 1 AB7 5 ARG B 45 GLU B 46 0 SHEET 2 AB7 5 GLU B 37 HIS B 42 -1 N HIS B 42 O ARG B 45 SHEET 3 AB7 5 GLY B 67 ARG B 74 -1 O ILE B 72 N LYS B 39 SHEET 4 AB7 5 THR B 85 PHE B 95 -1 O VAL B 87 N GLY B 67 SHEET 5 AB7 5 ILE B 117 PHE B 120 -1 O SER B 118 N GLY B 93 SHEET 1 AB8 2 LEU B 24 THR B 27 0 SHEET 2 AB8 2 ARG B 55 ILE B 58 -1 O TYR B 56 N LEU B 26 SHEET 1 AB9 5 LYS B 100 ASN B 105 0 SHEET 2 AB9 5 ILE B 179 GLU B 184 1 O THR B 180 N GLN B 102 SHEET 3 AB9 5 GLY B 159 VAL B 166 -1 N TYR B 161 O ILE B 179 SHEET 4 AB9 5 GLN B 124 ARG B 129 -1 N GLN B 124 O VAL B 166 SHEET 5 AB9 5 ARG B 132 LYS B 133 -1 O ARG B 132 N ARG B 129 SHEET 1 AC1 4 LYS B 100 ASN B 105 0 SHEET 2 AC1 4 ILE B 179 GLU B 184 1 O THR B 180 N GLN B 102 SHEET 3 AC1 4 GLY B 159 VAL B 166 -1 N TYR B 161 O ILE B 179 SHEET 4 AC1 4 ASN B 173 THR B 175 -1 O LYS B 174 N ALA B 165 SHEET 1 AC2 3 ALA B 110 ILE B 112 0 SHEET 2 AC2 3 LEU B 148 ILE B 150 -1 O LEU B 148 N ILE B 112 SHEET 3 AC2 3 ILE B 140 ILE B 142 -1 N ALA B 141 O VAL B 149 SHEET 1 AC3 2 THR B 196 ILE B 199 0 SHEET 2 AC3 2 VAL B 218 ASN B 220 -1 O ASN B 220 N THR B 196 SHEET 1 AC4 5 THR B 204 VAL B 207 0 SHEET 2 AC4 5 VAL B 276 ARG B 292 1 O LEU B 285 N VAL B 206 SHEET 3 AC4 5 GLY B 260 LEU B 268 -1 N CYS B 264 O ARG B 278 SHEET 4 AC4 5 LEU B 227 LYS B 233 -1 N VAL B 230 O GLU B 265 SHEET 5 AC4 5 ALA B 236 PRO B 237 -1 O ALA B 236 N LYS B 233 SHEET 1 AC5 3 THR B 204 VAL B 207 0 SHEET 2 AC5 3 VAL B 276 ARG B 292 1 O LEU B 285 N VAL B 206 SHEET 3 AC5 3 ARG B 311 VAL B 315 -1 O LYS B 313 N GLN B 289 SHEET 1 AC6 3 GLU B 212 GLU B 216 0 SHEET 2 AC6 3 ARG B 248 ALA B 252 -1 O LEU B 249 N MET B 215 SHEET 3 AC6 3 ILE B 242 SER B 243 -1 N SER B 243 O ARG B 248 SHEET 1 AC7 4 HIS B 297 GLU B 301 0 SHEET 2 AC7 4 GLU B 368 THR B 378 1 O TYR B 374 N ILE B 298 SHEET 3 AC7 4 GLY B 356 HIS B 363 -1 N CYS B 360 O THR B 371 SHEET 4 AC7 4 SER B 319 LYS B 324 -1 N TYR B 323 O GLN B 359 SHEET 1 AC8 3 VAL B 306 ILE B 308 0 SHEET 2 AC8 3 LEU B 345 ILE B 347 -1 O LEU B 345 N ILE B 308 SHEET 3 AC8 3 PHE B 337 GLN B 339 -1 N LYS B 338 O GLN B 346 SSBOND 1 CYS A 28 CYS A 71 1555 1555 2.03 SSBOND 2 CYS A 217 CYS A 264 1555 1555 2.03 SSBOND 3 CYS A 310 CYS A 360 1555 1555 2.03 SSBOND 4 CYS B 28 CYS B 71 1555 1555 2.03 SSBOND 5 CYS B 217 CYS B 264 1555 1555 2.03 SSBOND 6 CYS B 310 CYS B 360 1555 1555 2.03 LINK ND2 ASN A 173 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN A 203 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN B 173 C1 NAG B 501 1555 1555 1.44 LINK ND2 ASN B 203 C1 NAG D 1 1555 1555 1.44 LINK O6 NAG C 1 C1 FUC C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 3 1555 1555 1.44 CISPEP 1 TRP A 34 PRO A 35 0 -5.35 CISPEP 2 PHE A 120 PRO A 121 0 -4.54 CISPEP 3 ARG A 222 PRO A 223 0 3.35 CISPEP 4 VAL A 315 PRO A 316 0 1.22 CISPEP 5 TRP B 34 PRO B 35 0 -5.89 CISPEP 6 PHE B 120 PRO B 121 0 -4.27 CISPEP 7 ARG B 222 PRO B 223 0 3.05 CISPEP 8 VAL B 315 PRO B 316 0 -1.22 CRYST1 55.110 130.010 78.390 90.00 100.67 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018146 0.000000 0.003419 0.00000 SCALE2 0.000000 0.007692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012981 0.00000