HEADER CELL ADHESION 25-MAY-16 5K6Z TITLE SIDEKICK CHIMERA CONTAINING SIDEKICK-2 IMMUNOGLOBULIN DOMAINS 1-2 AND TITLE 2 SIDEKICK-1 IMMUNOGLOBULIN DOMAINS 3-4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SIDEKICK-2,PROTEIN SIDEKICK-1 CHIMERA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SDK2, KIAA1514, SDK1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS CELL ADHESION, IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR K.M.GOODMAN,S.MANNEPALLI,B.HONIG,L.SHAPIRO REVDAT 2 29-JUL-20 5K6Z 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 28-SEP-16 5K6Z 0 JRNL AUTH K.M.GOODMAN,M.YAMAGATA,X.JIN,S.MANNEPALLI,P.S.KATSAMBA, JRNL AUTH 2 G.AHLSEN,A.P.SERGEEVA,B.HONIG,J.R.SANES,L.SHAPIRO JRNL TITL MOLECULAR BASIS OF SIDEKICK-MEDIATED CELL-CELL ADHESION AND JRNL TITL 2 SPECIFICITY. JRNL REF ELIFE V. 5 2016 JRNL REFN ESSN 2050-084X JRNL PMID 27644106 JRNL DOI 10.7554/ELIFE.19058 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.37 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1393 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.3805 - 5.8134 0.99 2791 149 0.1956 0.2101 REMARK 3 2 5.8134 - 4.6157 1.00 2688 138 0.1604 0.1646 REMARK 3 3 4.6157 - 4.0327 1.00 2643 144 0.1437 0.1816 REMARK 3 4 4.0327 - 3.6641 1.00 2634 137 0.1646 0.2195 REMARK 3 5 3.6641 - 3.4016 1.00 2608 135 0.1911 0.2273 REMARK 3 6 3.4016 - 3.2011 1.00 2622 139 0.2107 0.2393 REMARK 3 7 3.2011 - 3.0408 1.00 2612 131 0.2290 0.3475 REMARK 3 8 3.0408 - 2.9085 1.00 2586 136 0.2433 0.2977 REMARK 3 9 2.9085 - 2.7965 1.00 2622 136 0.2552 0.3318 REMARK 3 10 2.7965 - 2.7001 1.00 2543 148 0.2680 0.3202 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.99 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6075 REMARK 3 ANGLE : 0.715 8292 REMARK 3 CHIRALITY : 0.047 942 REMARK 3 PLANARITY : 0.004 1079 REMARK 3 DIHEDRAL : 13.978 3666 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 2:90)) REMARK 3 ORIGIN FOR THE GROUP (A): 23.1495 -0.0583 17.0376 REMARK 3 T TENSOR REMARK 3 T11: 0.4309 T22: 0.2015 REMARK 3 T33: 0.1973 T12: -0.0715 REMARK 3 T13: -0.0274 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.8227 L22: 1.9965 REMARK 3 L33: 5.0898 L12: 0.1243 REMARK 3 L13: 1.3127 L23: -1.4958 REMARK 3 S TENSOR REMARK 3 S11: -0.1292 S12: 0.1658 S13: -0.0075 REMARK 3 S21: -0.7138 S22: 0.2518 S23: 0.1368 REMARK 3 S31: 0.2132 S32: -0.0399 S33: -0.1291 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 2:90)) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5462 -0.6170 49.6457 REMARK 3 T TENSOR REMARK 3 T11: 0.0893 T22: 0.2032 REMARK 3 T33: 0.1712 T12: 0.0022 REMARK 3 T13: 0.0219 T23: 0.0092 REMARK 3 L TENSOR REMARK 3 L11: 1.6582 L22: 2.1367 REMARK 3 L33: 6.6447 L12: 0.6615 REMARK 3 L13: 2.2800 L23: -0.2673 REMARK 3 S TENSOR REMARK 3 S11: 0.0520 S12: 0.0080 S13: -0.1156 REMARK 3 S21: -0.0728 S22: 0.1354 S23: 0.0436 REMARK 3 S31: 0.0243 S32: -0.0375 S33: -0.1756 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 91:185)) REMARK 3 ORIGIN FOR THE GROUP (A): 45.4001 -8.1860 51.3809 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.1115 REMARK 3 T33: 0.2001 T12: 0.0235 REMARK 3 T13: 0.0316 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 4.9131 L22: 1.7267 REMARK 3 L33: 4.1970 L12: -0.8598 REMARK 3 L13: 2.8700 L23: -0.9632 REMARK 3 S TENSOR REMARK 3 S11: -0.1763 S12: 0.0775 S13: -0.0220 REMARK 3 S21: 0.0862 S22: -0.0311 S23: -0.1783 REMARK 3 S31: 0.1047 S32: 0.1538 S33: 0.1998 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 91:186)) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3048 11.5014 16.4803 REMARK 3 T TENSOR REMARK 3 T11: 0.3070 T22: 0.3117 REMARK 3 T33: 0.3695 T12: -0.0256 REMARK 3 T13: -0.1671 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 3.2481 L22: 2.8082 REMARK 3 L33: 2.3466 L12: -2.6822 REMARK 3 L13: 1.9951 L23: -2.4676 REMARK 3 S TENSOR REMARK 3 S11: 0.2227 S12: 0.0343 S13: -0.4742 REMARK 3 S21: -0.3820 S22: 0.1332 S23: 0.5986 REMARK 3 S31: 0.2841 S32: -0.3734 S33: -0.2946 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 191:285)) REMARK 3 ORIGIN FOR THE GROUP (A): 49.9295 13.4909 49.4914 REMARK 3 T TENSOR REMARK 3 T11: 0.1723 T22: 0.2659 REMARK 3 T33: 0.3432 T12: -0.0105 REMARK 3 T13: 0.0466 T23: 0.0661 REMARK 3 L TENSOR REMARK 3 L11: 3.3248 L22: 4.0437 REMARK 3 L33: 7.7060 L12: -0.2132 REMARK 3 L13: 2.0297 L23: -1.0100 REMARK 3 S TENSOR REMARK 3 S11: 0.0669 S12: 0.3322 S13: 0.6130 REMARK 3 S21: 0.1245 S22: 0.0327 S23: 0.0656 REMARK 3 S31: -0.2996 S32: 0.2263 S33: -0.1056 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 191:285)) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5539 32.4022 23.2727 REMARK 3 T TENSOR REMARK 3 T11: 0.1795 T22: 0.3567 REMARK 3 T33: 0.2794 T12: 0.0544 REMARK 3 T13: -0.0469 T23: -0.0517 REMARK 3 L TENSOR REMARK 3 L11: 2.8040 L22: 3.5158 REMARK 3 L33: 2.8568 L12: 0.1236 REMARK 3 L13: -0.8080 L23: 0.1685 REMARK 3 S TENSOR REMARK 3 S11: 0.0808 S12: -0.1212 S13: -0.0401 REMARK 3 S21: 0.3568 S22: 0.1612 S23: -0.3305 REMARK 3 S31: 0.0262 S32: 0.2631 S33: -0.2395 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND ((RESSEQ 286:379)) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8686 15.8860 5.1264 REMARK 3 T TENSOR REMARK 3 T11: 0.5044 T22: 0.1784 REMARK 3 T33: 0.2217 T12: -0.0427 REMARK 3 T13: 0.0395 T23: -0.0323 REMARK 3 L TENSOR REMARK 3 L11: 2.4681 L22: 2.0298 REMARK 3 L33: 2.1573 L12: 0.8889 REMARK 3 L13: 0.7860 L23: -0.2541 REMARK 3 S TENSOR REMARK 3 S11: 0.0218 S12: 0.2588 S13: -0.0182 REMARK 3 S21: -0.5739 S22: 0.1452 S23: -0.0738 REMARK 3 S31: 0.4009 S32: 0.1101 S33: -0.1595 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND ((RESSEQ 286:379)) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2546 17.3841 62.7739 REMARK 3 T TENSOR REMARK 3 T11: 0.1328 T22: 0.1729 REMARK 3 T33: 0.2225 T12: -0.0009 REMARK 3 T13: -0.0501 T23: -0.0311 REMARK 3 L TENSOR REMARK 3 L11: 2.3735 L22: 3.6607 REMARK 3 L33: 7.3465 L12: -0.4829 REMARK 3 L13: 0.0290 L23: -1.1443 REMARK 3 S TENSOR REMARK 3 S11: -0.1028 S12: 0.0090 S13: 0.2207 REMARK 3 S21: -0.0126 S22: -0.0915 S23: -0.0252 REMARK 3 S31: -0.4988 S32: -0.1451 S33: 0.1865 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K6Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221719. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27743 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.14400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.50200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3% (W/V) PEG8000, 40% (V/V) 2-METHYL REMARK 280 -2,4-PENTANEDIOL, 0.1 M SODIUM CACODYLATE PH6.9, BATCH MODE, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.86500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.17500 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.86500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.17500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 GLN A 1 REMARK 465 VAL A 186 REMARK 465 GLY A 187 REMARK 465 GLY A 188 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 ALA B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 GLN B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 2 CG OD1 OD2 REMARK 470 ASP A 3 CG OD1 OD2 REMARK 470 ARG A 49 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 76 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 113 CD NE CZ NH1 NH2 REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 185 CG OD1 ND2 REMARK 470 HIS A 190 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 GLU A 274 CD OE1 OE2 REMARK 470 LYS A 331 CD CE NZ REMARK 470 GLU A 365 CG CD OE1 OE2 REMARK 470 LYS B 100 CD CE NZ REMARK 470 ARG B 116 CD NE CZ NH1 NH2 REMARK 470 ARG B 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 331 CD CE NZ REMARK 470 LYS B 338 CG CD CE NZ REMARK 470 LYS B 349 CD CE NZ REMARK 470 GLU B 365 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 28 79.26 -104.15 REMARK 500 GLU A 303 -13.33 75.95 REMARK 500 CYS A 310 117.14 -162.23 REMARK 500 SER B 119 139.78 -170.99 REMARK 500 GLU B 303 -8.13 73.92 REMARK 500 CYS B 310 119.05 -166.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5K6U RELATED DB: PDB REMARK 900 RELATED ID: 5K6V RELATED DB: PDB REMARK 900 RELATED ID: 5K6W RELATED DB: PDB REMARK 900 RELATED ID: 5K6X RELATED DB: PDB REMARK 900 RELATED ID: 5K6Y RELATED DB: PDB REMARK 900 RELATED ID: 5K70 RELATED DB: PDB DBREF 5K6Z A -2 187 UNP Q6V4S5 SDK2_MOUSE 22 211 DBREF 5K6Z A 188 379 UNP Q3UH53 SDK1_MOUSE 268 459 DBREF 5K6Z B -2 187 UNP Q6V4S5 SDK2_MOUSE 22 211 DBREF 5K6Z B 188 379 UNP Q3UH53 SDK1_MOUSE 268 459 SEQADV 5K6Z GLY A -4 UNP Q6V4S5 EXPRESSION TAG SEQADV 5K6Z PRO A -3 UNP Q6V4S5 EXPRESSION TAG SEQADV 5K6Z GLY B -4 UNP Q6V4S5 EXPRESSION TAG SEQADV 5K6Z PRO B -3 UNP Q6V4S5 EXPRESSION TAG SEQRES 1 A 384 GLY PRO ALA GLY ALA GLN ASP ASP VAL PRO PRO TYR PHE SEQRES 2 A 384 LYS THR GLU PRO VAL ARG THR GLN VAL HIS LEU GLU GLY SEQRES 3 A 384 ASN ARG LEU VAL LEU THR CYS MET ALA GLU GLY SER TRP SEQRES 4 A 384 PRO LEU GLU PHE LYS TRP LEU HIS ASN ASN ARG GLU LEU SEQRES 5 A 384 THR ARG PHE SER LEU GLU TYR ARG TYR MET ILE THR SER SEQRES 6 A 384 LEU ASP ARG THR HIS ALA GLY PHE TYR ARG CYS ILE VAL SEQRES 7 A 384 ARG ASN ARG MET GLY ALA LEU LEU GLN ARG GLN THR GLU SEQRES 8 A 384 VAL GLN VAL ALA TYR MET GLY SER PHE GLU GLU GLY GLU SEQRES 9 A 384 LYS ARG GLN SER VAL ASN HIS GLY GLU ALA ALA VAL ILE SEQRES 10 A 384 ARG ALA PRO ARG ILE SER SER PHE PRO ARG PRO GLN VAL SEQRES 11 A 384 THR TRP PHE ARG ASP GLY ARG LYS ILE PRO PRO SER SER SEQRES 12 A 384 ARG ILE ALA ILE THR LEU GLU ASN THR LEU VAL ILE LEU SEQRES 13 A 384 SER THR VAL ALA PRO ASP ALA GLY ARG TYR TYR VAL GLN SEQRES 14 A 384 ALA VAL ASN ASP LYS ASN GLY ASP ASN LYS THR SER GLN SEQRES 15 A 384 PRO ILE THR LEU ALA VAL GLU ASN VAL GLY GLY THR HIS SEQRES 16 A 384 GLU ALA MET ALA PRO ILE ILE VAL VAL ALA PRO GLY ASN SEQRES 17 A 384 ARG SER VAL VAL ALA GLY SER SER GLU THR THR LEU GLU SEQRES 18 A 384 CYS ILE ALA ASN ALA ARG PRO VAL GLU GLU LEU SER VAL SEQRES 19 A 384 HIS TRP LYS ARG ASN GLY VAL ARG LEU THR SER GLY LEU SEQRES 20 A 384 HIS SER TYR GLY ARG ARG LEU THR ILE THR ASN PRO THR SEQRES 21 A 384 SER ALA ASP THR GLY MET TYR VAL CYS GLU ALA THR LEU SEQRES 22 A 384 ARG GLY SER THR PHE GLU PRO ALA ARG ALA ARG ALA PHE SEQRES 23 A 384 LEU SER ILE ILE GLU PRO PRO TYR PHE THR ALA GLU PRO SEQRES 24 A 384 GLU SER ARG ILE LEU GLY GLU VAL GLU GLU THR MET ASP SEQRES 25 A 384 ILE PRO CYS ARG ALA MET GLY VAL PRO LEU PRO THR LEU SEQRES 26 A 384 GLN TRP TYR LYS ASP ALA VAL PRO LEU SER LYS LEU GLN SEQRES 27 A 384 ASN PRO ARG TYR LYS VAL LEU PRO SER GLY GLY LEU HIS SEQRES 28 A 384 ILE GLN LYS LEU SER PRO GLU ASP SER GLY ILE PHE GLN SEQRES 29 A 384 CYS PHE ALA SER ASN GLU GLY GLY GLU VAL GLN THR HIS SEQRES 30 A 384 THR TYR LEU ASP VAL THR ASN SEQRES 1 B 384 GLY PRO ALA GLY ALA GLN ASP ASP VAL PRO PRO TYR PHE SEQRES 2 B 384 LYS THR GLU PRO VAL ARG THR GLN VAL HIS LEU GLU GLY SEQRES 3 B 384 ASN ARG LEU VAL LEU THR CYS MET ALA GLU GLY SER TRP SEQRES 4 B 384 PRO LEU GLU PHE LYS TRP LEU HIS ASN ASN ARG GLU LEU SEQRES 5 B 384 THR ARG PHE SER LEU GLU TYR ARG TYR MET ILE THR SER SEQRES 6 B 384 LEU ASP ARG THR HIS ALA GLY PHE TYR ARG CYS ILE VAL SEQRES 7 B 384 ARG ASN ARG MET GLY ALA LEU LEU GLN ARG GLN THR GLU SEQRES 8 B 384 VAL GLN VAL ALA TYR MET GLY SER PHE GLU GLU GLY GLU SEQRES 9 B 384 LYS ARG GLN SER VAL ASN HIS GLY GLU ALA ALA VAL ILE SEQRES 10 B 384 ARG ALA PRO ARG ILE SER SER PHE PRO ARG PRO GLN VAL SEQRES 11 B 384 THR TRP PHE ARG ASP GLY ARG LYS ILE PRO PRO SER SER SEQRES 12 B 384 ARG ILE ALA ILE THR LEU GLU ASN THR LEU VAL ILE LEU SEQRES 13 B 384 SER THR VAL ALA PRO ASP ALA GLY ARG TYR TYR VAL GLN SEQRES 14 B 384 ALA VAL ASN ASP LYS ASN GLY ASP ASN LYS THR SER GLN SEQRES 15 B 384 PRO ILE THR LEU ALA VAL GLU ASN VAL GLY GLY THR HIS SEQRES 16 B 384 GLU ALA MET ALA PRO ILE ILE VAL VAL ALA PRO GLY ASN SEQRES 17 B 384 ARG SER VAL VAL ALA GLY SER SER GLU THR THR LEU GLU SEQRES 18 B 384 CYS ILE ALA ASN ALA ARG PRO VAL GLU GLU LEU SER VAL SEQRES 19 B 384 HIS TRP LYS ARG ASN GLY VAL ARG LEU THR SER GLY LEU SEQRES 20 B 384 HIS SER TYR GLY ARG ARG LEU THR ILE THR ASN PRO THR SEQRES 21 B 384 SER ALA ASP THR GLY MET TYR VAL CYS GLU ALA THR LEU SEQRES 22 B 384 ARG GLY SER THR PHE GLU PRO ALA ARG ALA ARG ALA PHE SEQRES 23 B 384 LEU SER ILE ILE GLU PRO PRO TYR PHE THR ALA GLU PRO SEQRES 24 B 384 GLU SER ARG ILE LEU GLY GLU VAL GLU GLU THR MET ASP SEQRES 25 B 384 ILE PRO CYS ARG ALA MET GLY VAL PRO LEU PRO THR LEU SEQRES 26 B 384 GLN TRP TYR LYS ASP ALA VAL PRO LEU SER LYS LEU GLN SEQRES 27 B 384 ASN PRO ARG TYR LYS VAL LEU PRO SER GLY GLY LEU HIS SEQRES 28 B 384 ILE GLN LYS LEU SER PRO GLU ASP SER GLY ILE PHE GLN SEQRES 29 B 384 CYS PHE ALA SER ASN GLU GLY GLY GLU VAL GLN THR HIS SEQRES 30 B 384 THR TYR LEU ASP VAL THR ASN HET NAG C 1 14 HET NAG C 2 14 HET NAG A 401 14 HET NAG A 402 14 HET MPD A 403 8 HET CAC B 403 5 HET MPD B 404 8 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CAC CACODYLATE ION HETSYN CAC DIMETHYLARSINATE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 6 MPD 2(C6 H14 O2) FORMUL 7 CAC C2 H6 AS O2 1- FORMUL 9 HOH *37(H2 O) HELIX 1 AA1 ASP A 62 ALA A 66 5 5 HELIX 2 AA2 VAL A 154 ALA A 158 5 5 HELIX 3 AA3 PRO A 223 GLU A 225 5 3 HELIX 4 AA4 THR A 255 THR A 259 5 5 HELIX 5 AA5 LEU A 329 GLN A 333 1 5 HELIX 6 AA6 SER A 351 SER A 355 5 5 HELIX 7 AA7 ASP B 62 ALA B 66 5 5 HELIX 8 AA8 VAL B 154 ALA B 158 5 5 HELIX 9 AA9 PRO B 223 GLU B 225 5 3 HELIX 10 AB1 THR B 255 THR B 259 5 5 HELIX 11 AB2 LEU B 329 GLN B 333 1 5 HELIX 12 AB3 SER B 351 SER B 355 5 5 SHEET 1 AA1 2 TYR A 7 PHE A 8 0 SHEET 2 AA1 2 ALA A 30 GLU A 31 -1 O GLU A 31 N TYR A 7 SHEET 1 AA2 4 THR A 15 LEU A 19 0 SHEET 2 AA2 4 THR A 85 MET A 92 1 O ALA A 90 N HIS A 18 SHEET 3 AA2 4 GLY A 67 ARG A 74 -1 N TYR A 69 O THR A 85 SHEET 4 AA2 4 ALA A 79 LEU A 81 -1 O LEU A 80 N VAL A 73 SHEET 1 AA3 5 ARG A 45 GLU A 46 0 SHEET 2 AA3 5 GLU A 37 HIS A 42 -1 N HIS A 42 O ARG A 45 SHEET 3 AA3 5 GLY A 67 ARG A 74 -1 O ARG A 70 N LEU A 41 SHEET 4 AA3 5 THR A 85 MET A 92 -1 O THR A 85 N TYR A 69 SHEET 5 AA3 5 SER A 119 PHE A 120 -1 O PHE A 120 N TYR A 91 SHEET 1 AA4 2 LEU A 24 THR A 27 0 SHEET 2 AA4 2 ARG A 55 ILE A 58 -1 O TYR A 56 N LEU A 26 SHEET 1 AA5 5 LYS A 100 ASN A 105 0 SHEET 2 AA5 5 ILE A 179 GLU A 184 1 O THR A 180 N GLN A 102 SHEET 3 AA5 5 GLY A 159 VAL A 166 -1 N TYR A 161 O ILE A 179 SHEET 4 AA5 5 GLN A 124 ARG A 129 -1 N THR A 126 O GLN A 164 SHEET 5 AA5 5 ARG A 132 LYS A 133 -1 O ARG A 132 N ARG A 129 SHEET 1 AA6 4 LYS A 100 ASN A 105 0 SHEET 2 AA6 4 ILE A 179 GLU A 184 1 O THR A 180 N GLN A 102 SHEET 3 AA6 4 GLY A 159 VAL A 166 -1 N TYR A 161 O ILE A 179 SHEET 4 AA6 4 ASN A 173 THR A 175 -1 O LYS A 174 N ALA A 165 SHEET 1 AA7 3 ALA A 110 ILE A 112 0 SHEET 2 AA7 3 LEU A 148 ILE A 150 -1 O LEU A 148 N ILE A 112 SHEET 3 AA7 3 ILE A 140 ILE A 142 -1 N ALA A 141 O VAL A 149 SHEET 1 AA8 2 MET A 193 VAL A 199 0 SHEET 2 AA8 2 ILE A 218 ARG A 222 -1 O ASN A 220 N ILE A 196 SHEET 1 AA9 5 ARG A 204 VAL A 207 0 SHEET 2 AA9 5 ALA A 276 ALA A 292 1 O ILE A 285 N VAL A 206 SHEET 3 AA9 5 GLY A 260 LEU A 268 -1 N TYR A 262 O ALA A 280 SHEET 4 AA9 5 LEU A 227 ARG A 233 -1 N LYS A 232 O VAL A 263 SHEET 5 AA9 5 VAL A 236 ARG A 237 -1 O VAL A 236 N ARG A 233 SHEET 1 AB1 3 ARG A 204 VAL A 207 0 SHEET 2 AB1 3 ALA A 276 ALA A 292 1 O ILE A 285 N VAL A 206 SHEET 3 AB1 3 ARG A 311 VAL A 315 -1 O MET A 313 N TYR A 289 SHEET 1 AB2 3 GLU A 212 GLU A 216 0 SHEET 2 AB2 3 ARG A 248 THR A 252 -1 O ILE A 251 N THR A 213 SHEET 3 AB2 3 LEU A 242 HIS A 243 -1 N HIS A 243 O ARG A 248 SHEET 1 AB3 5 ARG A 297 GLU A 301 0 SHEET 2 AB3 5 GLY A 367 THR A 378 1 O ASP A 376 N GLY A 300 SHEET 3 AB3 5 GLY A 356 ASN A 364 -1 N ALA A 362 O VAL A 369 SHEET 4 AB3 5 THR A 319 LYS A 324 -1 N TYR A 323 O GLN A 359 SHEET 5 AB3 5 VAL A 327 PRO A 328 -1 O VAL A 327 N LYS A 324 SHEET 1 AB4 3 MET A 306 ILE A 308 0 SHEET 2 AB4 3 LEU A 345 ILE A 347 -1 O LEU A 345 N ILE A 308 SHEET 3 AB4 3 TYR A 337 VAL A 339 -1 N LYS A 338 O HIS A 346 SHEET 1 AB5 2 TYR B 7 PHE B 8 0 SHEET 2 AB5 2 ALA B 30 GLU B 31 -1 O GLU B 31 N TYR B 7 SHEET 1 AB6 4 THR B 15 LEU B 19 0 SHEET 2 AB6 4 THR B 85 PHE B 95 1 O ALA B 90 N HIS B 18 SHEET 3 AB6 4 GLY B 67 ARG B 74 -1 N GLY B 67 O VAL B 87 SHEET 4 AB6 4 ALA B 79 LEU B 81 -1 O LEU B 80 N VAL B 73 SHEET 1 AB7 5 ARG B 45 GLU B 46 0 SHEET 2 AB7 5 GLU B 37 HIS B 42 -1 N HIS B 42 O ARG B 45 SHEET 3 AB7 5 GLY B 67 ARG B 74 -1 O ARG B 70 N LEU B 41 SHEET 4 AB7 5 THR B 85 PHE B 95 -1 O VAL B 87 N GLY B 67 SHEET 5 AB7 5 ILE B 117 PHE B 120 -1 O SER B 118 N GLY B 93 SHEET 1 AB8 2 LEU B 24 THR B 27 0 SHEET 2 AB8 2 ARG B 55 ILE B 58 -1 O TYR B 56 N LEU B 26 SHEET 1 AB9 5 LYS B 100 ASN B 105 0 SHEET 2 AB9 5 ILE B 179 GLU B 184 1 O ALA B 182 N GLN B 102 SHEET 3 AB9 5 GLY B 159 VAL B 166 -1 N TYR B 161 O ILE B 179 SHEET 4 AB9 5 GLN B 124 ARG B 129 -1 N PHE B 128 O TYR B 162 SHEET 5 AB9 5 ARG B 132 LYS B 133 -1 O ARG B 132 N ARG B 129 SHEET 1 AC1 4 LYS B 100 ASN B 105 0 SHEET 2 AC1 4 ILE B 179 GLU B 184 1 O ALA B 182 N GLN B 102 SHEET 3 AC1 4 GLY B 159 VAL B 166 -1 N TYR B 161 O ILE B 179 SHEET 4 AC1 4 ASN B 173 THR B 175 -1 O LYS B 174 N ALA B 165 SHEET 1 AC2 3 ALA B 110 ILE B 112 0 SHEET 2 AC2 3 LEU B 148 ILE B 150 -1 O LEU B 148 N ILE B 112 SHEET 3 AC2 3 ILE B 140 ILE B 142 -1 N ALA B 141 O VAL B 149 SHEET 1 AC3 2 MET B 193 VAL B 199 0 SHEET 2 AC3 2 ILE B 218 ARG B 222 -1 O ASN B 220 N ILE B 196 SHEET 1 AC4 5 ARG B 204 VAL B 207 0 SHEET 2 AC4 5 ALA B 276 ALA B 292 1 O SER B 283 N ARG B 204 SHEET 3 AC4 5 GLY B 260 LEU B 268 -1 N TYR B 262 O ALA B 280 SHEET 4 AC4 5 LEU B 227 ARG B 233 -1 N LYS B 232 O VAL B 263 SHEET 5 AC4 5 VAL B 236 ARG B 237 -1 O VAL B 236 N ARG B 233 SHEET 1 AC5 3 ARG B 204 VAL B 207 0 SHEET 2 AC5 3 ALA B 276 ALA B 292 1 O SER B 283 N ARG B 204 SHEET 3 AC5 3 ARG B 311 VAL B 315 -1 O MET B 313 N TYR B 289 SHEET 1 AC6 3 GLU B 212 GLU B 216 0 SHEET 2 AC6 3 ARG B 248 THR B 252 -1 O LEU B 249 N LEU B 215 SHEET 3 AC6 3 LEU B 242 HIS B 243 -1 N HIS B 243 O ARG B 248 SHEET 1 AC7 5 ARG B 297 GLU B 301 0 SHEET 2 AC7 5 GLY B 367 THR B 378 1 O ASP B 376 N GLY B 300 SHEET 3 AC7 5 GLY B 356 ASN B 364 -1 N ALA B 362 O VAL B 369 SHEET 4 AC7 5 THR B 319 LYS B 324 -1 N TYR B 323 O GLN B 359 SHEET 5 AC7 5 VAL B 327 PRO B 328 -1 O VAL B 327 N LYS B 324 SHEET 1 AC8 3 MET B 306 ILE B 308 0 SHEET 2 AC8 3 LEU B 345 ILE B 347 -1 O ILE B 347 N MET B 306 SHEET 3 AC8 3 TYR B 337 VAL B 339 -1 N LYS B 338 O HIS B 346 SSBOND 1 CYS A 28 CYS A 71 1555 1555 2.03 SSBOND 2 CYS A 217 CYS A 264 1555 1555 2.04 SSBOND 3 CYS A 310 CYS A 360 1555 1555 2.04 SSBOND 4 CYS B 28 CYS B 71 1555 1555 2.04 SSBOND 5 CYS B 217 CYS B 264 1555 1555 2.04 SSBOND 6 CYS B 310 CYS B 360 1555 1555 2.04 LINK ND2 ASN A 173 C1 NAG A 402 1555 1555 1.43 LINK ND2 ASN A 203 C1 NAG A 401 1555 1555 1.45 LINK ND2 ASN B 203 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 CISPEP 1 TRP A 34 PRO A 35 0 6.30 CISPEP 2 PHE A 120 PRO A 121 0 -7.69 CISPEP 3 ARG A 222 PRO A 223 0 5.22 CISPEP 4 VAL A 315 PRO A 316 0 1.45 CISPEP 5 TRP B 34 PRO B 35 0 -3.20 CISPEP 6 PHE B 120 PRO B 121 0 -6.62 CISPEP 7 ARG B 222 PRO B 223 0 -3.97 CISPEP 8 VAL B 315 PRO B 316 0 -0.22 CRYST1 78.350 85.730 146.350 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011665 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006833 0.00000