HEADER TRANSCRIPTION 26-MAY-16 5K7H TITLE CRYSTAL STRUCTURE OF AIBR IN COMPLEX WITH THE EFFECTOR MOLECULE TITLE 2 ISOVALERYL COENZYME A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, TETR FAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYXOCOCCUS XANTHUS DK 1622; SOURCE 3 ORGANISM_TAXID: 246197; SOURCE 4 GENE: MXAN_4263; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TETR LIKE REGULATOR, ISOVALERYL COENZYME A, REGULATION, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR T.BOCK,C.VOLZ,R.MUELLER,W.BLANKENFELDT REVDAT 3 10-JAN-24 5K7H 1 LINK REVDAT 2 03-MAY-17 5K7H 1 JRNL REVDAT 1 21-DEC-16 5K7H 0 JRNL AUTH T.BOCK,C.VOLZ,V.HERING,A.SCRIMA,R.MULLER,W.BLANKENFELDT JRNL TITL THE AIBR-ISOVALERYL COENZYME A REGULATOR AND ITS DNA BINDING JRNL TITL 2 SITE - A MODEL FOR THE REGULATION OF ALTERNATIVE DE NOVO JRNL TITL 3 ISOVALERYL COENZYME A BIOSYNTHESIS IN MYXOCOCCUS XANTHUS. JRNL REF NUCLEIC ACIDS RES. V. 45 2166 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 27940564 JRNL DOI 10.1093/NAR/GKW1238 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 25108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1231 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.8982 - 4.8866 1.00 2704 135 0.1659 0.2398 REMARK 3 2 4.8866 - 3.8793 1.00 2659 130 0.1521 0.1822 REMARK 3 3 3.8793 - 3.3892 1.00 2663 139 0.1877 0.2268 REMARK 3 4 3.3892 - 3.0794 1.00 2620 167 0.2311 0.2567 REMARK 3 5 3.0794 - 2.8587 1.00 2637 140 0.2369 0.2869 REMARK 3 6 2.8587 - 2.6902 1.00 2668 122 0.2284 0.2317 REMARK 3 7 2.6902 - 2.5555 1.00 2647 134 0.2278 0.2496 REMARK 3 8 2.5555 - 2.4442 1.00 2662 123 0.2357 0.2495 REMARK 3 9 2.4442 - 2.3501 1.00 2617 141 0.2702 0.3068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3056 REMARK 3 ANGLE : 0.512 4152 REMARK 3 CHIRALITY : 0.035 455 REMARK 3 PLANARITY : 0.002 518 REMARK 3 DIHEDRAL : 14.665 1780 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K7H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220499. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9762 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25158 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 44.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.200 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.76500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5K7F REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE PH 4.6, 2 M REMARK 280 SODIUM CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.03933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.07867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.05900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 110.09833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.01967 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASN A 3 REMARK 465 THR A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 PRO A 9 REMARK 465 ASP A 10 REMARK 465 GLU A 11 REMARK 465 GLY A 12 REMARK 465 GLU A 13 REMARK 465 ALA A 198 REMARK 465 ALA A 199 REMARK 465 ALA A 200 REMARK 465 GLY A 201 REMARK 465 ASP A 202 REMARK 465 THR A 203 REMARK 465 ALA A 204 REMARK 465 GLY A 205 REMARK 465 GLN A 206 REMARK 465 ALA A 207 REMARK 465 GLY A 208 REMARK 465 PRO A 209 REMARK 465 SER A 210 REMARK 465 PRO A 211 REMARK 465 LEU A 212 REMARK 465 ARG A 213 REMARK 465 MET A 214 REMARK 465 VAL A 215 REMARK 465 PRO A 216 REMARK 465 SER A 217 REMARK 465 VAL A 218 REMARK 465 SER A 219 REMARK 465 ALA A 220 REMARK 465 THR A 221 REMARK 465 GLY A 222 REMARK 465 THR A 223 REMARK 465 ASP A 224 REMARK 465 SER A 225 REMARK 465 GLU A 226 REMARK 465 ASP A 227 REMARK 465 ALA A 228 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ASN B 3 REMARK 465 THR B 4 REMARK 465 GLY B 5 REMARK 465 GLY B 6 REMARK 465 ARG B 7 REMARK 465 LYS B 8 REMARK 465 PRO B 9 REMARK 465 ASP B 10 REMARK 465 GLU B 11 REMARK 465 GLY B 12 REMARK 465 GLU B 13 REMARK 465 ALA B 198 REMARK 465 ALA B 199 REMARK 465 ALA B 200 REMARK 465 GLY B 201 REMARK 465 ASP B 202 REMARK 465 THR B 203 REMARK 465 ALA B 204 REMARK 465 GLY B 205 REMARK 465 GLN B 206 REMARK 465 ALA B 207 REMARK 465 GLY B 208 REMARK 465 PRO B 209 REMARK 465 SER B 210 REMARK 465 PRO B 211 REMARK 465 LEU B 212 REMARK 465 ARG B 213 REMARK 465 MET B 214 REMARK 465 VAL B 215 REMARK 465 PRO B 216 REMARK 465 SER B 217 REMARK 465 VAL B 218 REMARK 465 SER B 219 REMARK 465 ALA B 220 REMARK 465 THR B 221 REMARK 465 GLY B 222 REMARK 465 THR B 223 REMARK 465 ASP B 224 REMARK 465 SER B 225 REMARK 465 GLU B 226 REMARK 465 ASP B 227 REMARK 465 ALA B 228 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 GLU A 38 CG CD OE1 OE2 REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 MET A 45 CG SD CE REMARK 470 THR A 46 OG1 CG2 REMARK 470 LYS A 47 CG CD CE NZ REMARK 470 HIS A 52 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 58 CG CD OE1 OE2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 ASP A 177 CG OD1 OD2 REMARK 470 ARG B 14 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 GLN B 37 CG CD OE1 NE2 REMARK 470 ARG B 44 CG CD NE CZ NH1 NH2 REMARK 470 THR B 46 OG1 CG2 REMARK 470 LYS B 47 CG CD CE NZ REMARK 470 HIS B 52 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 74 CG CD OE1 OE2 REMARK 470 GLU B 88 CG CD OE1 OE2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 ASP B 177 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HIS B 116 NH1 ARG B 124 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 76 -72.63 -120.56 REMARK 500 ARG A 103 -159.77 -139.53 REMARK 500 ARG B 44 84.28 -68.03 REMARK 500 VAL B 76 -74.20 -115.62 REMARK 500 ARG B 103 -156.64 -136.97 REMARK 500 TRP B 173 -31.86 -132.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 96 NE2 REMARK 620 2 CL A 302 CL 116.4 REMARK 620 3 CL A 303 CL 104.2 105.9 REMARK 620 4 HIS B 96 NE2 64.1 105.9 44.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IVC A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IVC B 302 DBREF 5K7H A 1 228 UNP Q1D4I5 Q1D4I5_MYXXD 1 228 DBREF 5K7H B 1 228 UNP Q1D4I5 Q1D4I5_MYXXD 1 228 SEQADV 5K7H GLY A -2 UNP Q1D4I5 EXPRESSION TAG SEQADV 5K7H SER A -1 UNP Q1D4I5 EXPRESSION TAG SEQADV 5K7H HIS A 0 UNP Q1D4I5 EXPRESSION TAG SEQADV 5K7H GLY B -2 UNP Q1D4I5 EXPRESSION TAG SEQADV 5K7H SER B -1 UNP Q1D4I5 EXPRESSION TAG SEQADV 5K7H HIS B 0 UNP Q1D4I5 EXPRESSION TAG SEQRES 1 A 231 GLY SER HIS MET THR ASN THR GLY GLY ARG LYS PRO ASP SEQRES 2 A 231 GLU GLY GLU ARG TYR ARG ALA ILE LEU GLU THR ALA ALA SEQRES 3 A 231 ARG LEU ILE CYS ASP ARG GLY TYR GLU GLY THR SER MET SEQRES 4 A 231 GLN GLU ILE ALA ALA ALA CYS ARG MET THR LYS ALA GLY SEQRES 5 A 231 LEU TYR HIS HIS ILE GLN ASN LYS GLU GLN LEU LEU PHE SEQRES 6 A 231 ALA ILE MET ASN TYR GLY MET ASP LEU PHE GLU GLU GLN SEQRES 7 A 231 VAL LEU SER ARG VAL GLN ASP ILE ALA ASN PRO VAL GLU SEQRES 8 A 231 ARG LEU ARG ALA CYS MET ARG HIS ASN ILE LEU LEU VAL SEQRES 9 A 231 THR ARG GLY TRP SER LYS GLU VAL ILE ILE ILE LEU HIS SEQRES 10 A 231 GLU HIS ALA THR LEU THR GLY GLU THR ARG ALA PHE ILE SEQRES 11 A 231 ASP ALA ARG LYS LYS LYS TYR VAL ASP PHE LEU GLU GLU SEQRES 12 A 231 ALA PHE SER GLN ALA SER GLN GLN GLY LEU ILE ARG PRO SEQRES 13 A 231 VAL ASP PRO THR VAL GLY ALA PHE SER PHE LEU GLY MET SEQRES 14 A 231 VAL LEU TRP ILE TYR LYS TRP PHE LYS PRO ASP GLY ARG SEQRES 15 A 231 LEU THR ASP GLU GLN ILE ALA ASP GLY MET VAL GLY MET SEQRES 16 A 231 LEU PHE PRO PRO PHE ALA ALA ALA GLY ASP THR ALA GLY SEQRES 17 A 231 GLN ALA GLY PRO SER PRO LEU ARG MET VAL PRO SER VAL SEQRES 18 A 231 SER ALA THR GLY THR ASP SER GLU ASP ALA SEQRES 1 B 231 GLY SER HIS MET THR ASN THR GLY GLY ARG LYS PRO ASP SEQRES 2 B 231 GLU GLY GLU ARG TYR ARG ALA ILE LEU GLU THR ALA ALA SEQRES 3 B 231 ARG LEU ILE CYS ASP ARG GLY TYR GLU GLY THR SER MET SEQRES 4 B 231 GLN GLU ILE ALA ALA ALA CYS ARG MET THR LYS ALA GLY SEQRES 5 B 231 LEU TYR HIS HIS ILE GLN ASN LYS GLU GLN LEU LEU PHE SEQRES 6 B 231 ALA ILE MET ASN TYR GLY MET ASP LEU PHE GLU GLU GLN SEQRES 7 B 231 VAL LEU SER ARG VAL GLN ASP ILE ALA ASN PRO VAL GLU SEQRES 8 B 231 ARG LEU ARG ALA CYS MET ARG HIS ASN ILE LEU LEU VAL SEQRES 9 B 231 THR ARG GLY TRP SER LYS GLU VAL ILE ILE ILE LEU HIS SEQRES 10 B 231 GLU HIS ALA THR LEU THR GLY GLU THR ARG ALA PHE ILE SEQRES 11 B 231 ASP ALA ARG LYS LYS LYS TYR VAL ASP PHE LEU GLU GLU SEQRES 12 B 231 ALA PHE SER GLN ALA SER GLN GLN GLY LEU ILE ARG PRO SEQRES 13 B 231 VAL ASP PRO THR VAL GLY ALA PHE SER PHE LEU GLY MET SEQRES 14 B 231 VAL LEU TRP ILE TYR LYS TRP PHE LYS PRO ASP GLY ARG SEQRES 15 B 231 LEU THR ASP GLU GLN ILE ALA ASP GLY MET VAL GLY MET SEQRES 16 B 231 LEU PHE PRO PRO PHE ALA ALA ALA GLY ASP THR ALA GLY SEQRES 17 B 231 GLN ALA GLY PRO SER PRO LEU ARG MET VAL PRO SER VAL SEQRES 18 B 231 SER ALA THR GLY THR ASP SER GLU ASP ALA HET NI A 301 1 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET IVC A 305 94 HET CL B 301 1 HET IVC B 302 94 HETNAM NI NICKEL (II) ION HETNAM CL CHLORIDE ION HETNAM IVC ISOVALERYL-COENZYME A HETSYN IVC S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9- HETSYN 2 IVC YL)-4-OXIDANYL-3-PHOSPHONOOXY-OXOLAN-2-YL]METHOXY- HETSYN 3 IVC OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-PHOSPHORYL]OXY-3,3- HETSYN 4 IVC DIMETHYL-2-OXIDANYL- HETSYN 5 IVC BUTANOYL]AMINO]PROPANOYLAMINO]ETHYL] 3- HETSYN 6 IVC METHYLBUTANETHIOATE FORMUL 3 NI NI 2+ FORMUL 4 CL 4(CL 1-) FORMUL 7 IVC 2(C26 H44 N7 O17 P3 S) FORMUL 10 HOH *28(H2 O) HELIX 1 AA1 ARG A 14 ARG A 29 1 16 HELIX 2 AA2 SER A 35 CYS A 43 1 9 HELIX 3 AA3 THR A 46 ILE A 54 1 9 HELIX 4 AA4 ASN A 56 VAL A 76 1 21 HELIX 5 AA5 VAL A 76 GLN A 81 1 6 HELIX 6 AA6 ASN A 85 THR A 102 1 18 HELIX 7 AA7 TRP A 105 GLU A 115 1 11 HELIX 8 AA8 HIS A 116 LEU A 119 5 4 HELIX 9 AA9 THR A 120 GLN A 148 1 29 HELIX 10 AB1 ASP A 155 TRP A 169 1 15 HELIX 11 AB2 ILE A 170 TRP A 173 5 4 HELIX 12 AB3 THR A 181 PHE A 194 1 14 HELIX 13 AB4 TYR B 15 ARG B 29 1 15 HELIX 14 AB5 SER B 35 CYS B 43 1 9 HELIX 15 AB6 THR B 46 HIS B 52 1 7 HELIX 16 AB7 ASN B 56 VAL B 76 1 21 HELIX 17 AB8 VAL B 76 GLN B 81 1 6 HELIX 18 AB9 ASN B 85 THR B 102 1 18 HELIX 19 AC1 TRP B 105 GLU B 115 1 11 HELIX 20 AC2 THR B 120 GLN B 148 1 29 HELIX 21 AC3 ASP B 155 TRP B 169 1 15 HELIX 22 AC4 ILE B 170 TRP B 173 5 4 HELIX 23 AC5 THR B 181 PHE B 194 1 14 LINK NE2 HIS A 96 NI NI A 301 1555 1555 1.91 LINK NI NI A 301 CL CL A 302 1555 1555 2.24 LINK NI NI A 301 CL CL A 303 1555 1555 2.20 LINK NI NI A 301 NE2 HIS B 96 5554 1555 1.91 SITE 1 AC1 4 HIS A 96 CL A 302 CL A 303 HIS B 96 SITE 1 AC2 4 HIS A 96 NI A 301 CL A 303 HIS B 96 SITE 1 AC3 4 HIS A 96 NI A 301 CL A 302 HIS B 96 SITE 1 AC4 2 LYS A 131 IVC B 302 SITE 1 AC5 15 TRP A 169 LYS A 172 TRP A 173 PHE A 174 SITE 2 AC5 15 LYS A 175 GLY A 178 ARG A 179 LEU A 180 SITE 3 AC5 15 PHE B 72 LYS B 131 LYS B 132 ASP B 136 SITE 4 AC5 15 GLU B 139 PHE B 161 CL B 301 SITE 1 AC6 2 IVC A 305 LYS B 131 SITE 1 AC7 17 PHE A 72 LYS A 131 LYS A 132 TYR A 134 SITE 2 AC7 17 VAL A 135 PHE A 161 CL A 304 GLU B 122 SITE 3 AC7 17 TRP B 169 LYS B 172 TRP B 173 PHE B 174 SITE 4 AC7 17 LYS B 175 GLY B 178 ARG B 179 LEU B 180 SITE 5 AC7 17 HOH B 405 CRYST1 89.780 89.780 132.118 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011138 0.006431 0.000000 0.00000 SCALE2 0.000000 0.012861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007569 0.00000