HEADER OXIDOREDUCTASE 27-MAY-16 5K84 TITLE CRYSTAL STRUCTURE OF LACCASE FROM THERMUS THERMOPHILUS HB27 (SODIUM TITLE 2 NITRATE 10 MIN) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LACCASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 24-462; COMPND 5 SYNONYM: MULTICOPPER OXIDASE; COMPND 6 EC: 1.10.3.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB27 / ATCC BAA- SOURCE 3 163 / DSM 7039); SOURCE 4 ORGANISM_TAXID: 262724; SOURCE 5 STRAIN: HB27 / ATCC BAA-163 / DSM 7039; SOURCE 6 GENE: TT_C1370; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE, MULTICOPPER OXIDASE EXPDTA X-RAY DIFFRACTION AUTHOR A.DIAZ-VILCHIS,R.R.RUIZ-ARELLANO,E.ROSAS-BENITEZ,E.RUDINO-PINERA REVDAT 2 27-SEP-23 5K84 1 REMARK REVDAT 1 07-JUN-17 5K84 0 JRNL AUTH A.DIAZ-VILCHIS,R.R.RUIZ-ARELLANO,E.ROSAS-BENITEZ, JRNL AUTH 2 V.STOJANOFF,E.RUDINO-PINERA JRNL TITL PRESERVING METALLIC SITES AFFECTED BY RADIATION DAMAGE: THE JRNL TITL 2 CUT2 CASE IN THERMUS THERMOPHILUS MULTICOPPER OXIDASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 47608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2405 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.6435 - 4.5589 0.99 2805 143 0.1448 0.1760 REMARK 3 2 4.5589 - 3.6260 1.00 2706 137 0.1163 0.1440 REMARK 3 3 3.6260 - 3.1698 1.00 2694 143 0.1278 0.1587 REMARK 3 4 3.1698 - 2.8810 1.00 2687 134 0.1399 0.1759 REMARK 3 5 2.8810 - 2.6750 1.00 2637 151 0.1473 0.1805 REMARK 3 6 2.6750 - 2.5177 1.00 2668 138 0.1603 0.2146 REMARK 3 7 2.5177 - 2.3918 1.00 2639 151 0.1657 0.2130 REMARK 3 8 2.3918 - 2.2878 1.00 2662 130 0.1639 0.2033 REMARK 3 9 2.2878 - 2.1999 1.00 2633 154 0.1615 0.2125 REMARK 3 10 2.1999 - 2.1241 1.00 2630 142 0.1729 0.2130 REMARK 3 11 2.1241 - 2.0577 1.00 2667 126 0.1693 0.2012 REMARK 3 12 2.0577 - 1.9990 1.00 2625 134 0.1748 0.2134 REMARK 3 13 1.9990 - 1.9464 1.00 2626 150 0.1820 0.2087 REMARK 3 14 1.9464 - 1.8989 1.00 2632 151 0.1955 0.2604 REMARK 3 15 1.8989 - 1.8558 1.00 2609 149 0.2165 0.2558 REMARK 3 16 1.8558 - 1.8163 1.00 2632 147 0.2310 0.2618 REMARK 3 17 1.8163 - 1.7800 1.00 2651 125 0.2426 0.2855 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4307 REMARK 3 ANGLE : 0.870 5963 REMARK 3 CHIRALITY : 0.051 651 REMARK 3 PLANARITY : 0.005 796 REMARK 3 DIHEDRAL : 24.507 1691 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5K84 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000221873. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47608 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 19.642 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.660 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 4.550 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.52 REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2XU9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.5, 70% MPD, PH 8.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.03500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.03500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.75500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 54.99500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.75500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.99500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.03500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.75500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 54.99500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.03500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.75500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 54.99500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 706 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 963 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 338 O HOH A 601 2.07 REMARK 500 O HOH A 913 O HOH A 944 2.12 REMARK 500 O HOH A 845 O HOH A 907 2.16 REMARK 500 O HOH A 1029 O HOH A 1031 2.17 REMARK 500 O HOH A 636 O HOH A 1020 2.17 REMARK 500 O HOH A 811 O HOH A 985 2.17 REMARK 500 O HOH A 1027 O HOH A 1029 2.18 REMARK 500 O HOH A 983 O HOH A 997 2.18 REMARK 500 O HOH A 627 O HOH A 900 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 MPD A 517 O4 MPD A 517 3554 0.14 REMARK 500 C2 MPD A 517 C4 MPD A 517 3554 0.56 REMARK 500 C2 MPD A 517 C3 MPD A 517 3554 1.08 REMARK 500 C1 MPD A 517 C4 MPD A 517 3554 1.08 REMARK 500 CM MPD A 517 C3 MPD A 517 3554 1.10 REMARK 500 C1 MPD A 517 C5 MPD A 517 3554 1.37 REMARK 500 C2 MPD A 517 O4 MPD A 517 3554 1.44 REMARK 500 O2 MPD A 517 C4 MPD A 517 3554 1.47 REMARK 500 C3 MPD A 517 C3 MPD A 517 3554 1.50 REMARK 500 CM MPD A 517 C4 MPD A 517 3554 1.80 REMARK 500 C3 MPD A 517 C4 MPD A 517 3554 1.94 REMARK 500 C2 MPD A 517 C5 MPD A 517 3554 1.96 REMARK 500 C2 MPD A 517 C2 MPD A 517 3554 2.11 REMARK 500 C1 MPD A 517 C3 MPD A 517 3554 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 77 -0.51 75.29 REMARK 500 ILE A 101 -169.41 -103.69 REMARK 500 VAL A 105 -60.46 -98.98 REMARK 500 HIS A 137 51.75 -146.18 REMARK 500 HIS A 137 54.38 -144.72 REMARK 500 ALA A 230 -22.20 -153.36 REMARK 500 ALA A 247 -157.60 -102.52 REMARK 500 LEU A 333 -100.59 -117.12 REMARK 500 LEU A 333 -101.59 -117.12 REMARK 500 VAL A 399 -33.55 74.08 REMARK 500 ARG A 436 -98.97 -107.76 REMARK 500 ARG A 436 -98.97 -107.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 97 ND1 REMARK 620 2 HIS A 135 NE2 144.9 REMARK 620 3 HIS A 446 NE2 106.2 107.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 137 NE2 REMARK 620 2 HIS A 137 NE2 3.8 REMARK 620 3 HIS A 398 NE2 101.7 104.8 REMARK 620 4 HIS A 444 NE2 96.2 92.9 115.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 503 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 393 ND1 REMARK 620 2 CYS A 445 SG 122.2 REMARK 620 3 HIS A 450 ND1 108.6 128.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CU A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 517 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JRR RELATED DB: PDB REMARK 900 RELATED ID: 5JX9 RELATED DB: PDB REMARK 900 RELATED ID: 5K0D RELATED DB: PDB REMARK 900 RELATED ID: 5K15 RELATED DB: PDB REMARK 900 RELATED ID: 5K3K RELATED DB: PDB REMARK 900 RELATED ID: 5K5K RELATED DB: PDB REMARK 900 RELATED ID: 5K7A RELATED DB: PDB DBREF 5K84 A 24 462 UNP Q72HW2 Q72HW2_THET2 24 462 SEQADV 5K84 ILE A 53 UNP Q72HW2 LEU 53 CONFLICT SEQRES 1 A 439 GLY PRO SER PHE PRO GLU PRO LYS VAL VAL ARG SER GLN SEQRES 2 A 439 GLY GLY LEU LEU SER LEU LYS LEU SER ALA THR PRO THR SEQRES 3 A 439 PRO LEU ALA ILE ALA GLY GLN ARG ALA THR LEU LEU THR SEQRES 4 A 439 TYR GLY GLY SER PHE PRO GLY PRO THR LEU ARG VAL ARG SEQRES 5 A 439 PRO ARG ASP THR VAL ARG LEU THR LEU GLU ASN ARG LEU SEQRES 6 A 439 PRO GLU PRO THR ASN LEU HIS TRP HIS GLY LEU PRO ILE SEQRES 7 A 439 SER PRO LYS VAL ASP ASP PRO PHE LEU GLU ILE PRO PRO SEQRES 8 A 439 GLY GLU SER TRP THR TYR GLU PHE THR VAL PRO LYS GLU SEQRES 9 A 439 LEU ALA GLY THR PHE TRP TYR HIS PRO HIS LEU HIS GLY SEQRES 10 A 439 ARG VAL ALA PRO GLN LEU PHE ALA GLY LEU LEU GLY ALA SEQRES 11 A 439 LEU VAL VAL GLU SER SER LEU ASP ALA ILE PRO GLU LEU SEQRES 12 A 439 ARG GLU ALA GLU GLU HIS LEU LEU VAL LEU LYS ASP LEU SEQRES 13 A 439 ALA LEU GLN GLY GLY ARG PRO ALA PRO HIS THR PRO MET SEQRES 14 A 439 ASP TRP MET ASN GLY LYS GLU GLY ASP LEU VAL LEU VAL SEQRES 15 A 439 ASN GLY ALA LEU ARG PRO THR LEU VAL ALA GLN LYS ALA SEQRES 16 A 439 THR LEU ARG LEU ARG LEU LEU ASN ALA SER ASN ALA ARG SEQRES 17 A 439 TYR TYR ARG LEU ALA LEU GLN ASP HIS PRO LEU TYR LEU SEQRES 18 A 439 ILE ALA ALA ASP GLY GLY PHE LEU GLU GLU PRO LEU GLU SEQRES 19 A 439 VAL SER GLU LEU LEU LEU ALA PRO GLY GLU ARG ALA GLU SEQRES 20 A 439 VAL LEU VAL ARG LEU ARG LYS GLU GLY ARG PHE LEU LEU SEQRES 21 A 439 GLN ALA LEU PRO TYR ASP ARG GLY ALA MET GLY MET MET SEQRES 22 A 439 ASP MET GLY GLY MET ALA HIS ALA MET PRO GLN GLY PRO SEQRES 23 A 439 SER ARG PRO GLU THR LEU LEU TYR LEU ILE ALA PRO LYS SEQRES 24 A 439 ASN PRO LYS PRO LEU PRO LEU PRO LYS ALA LEU SER PRO SEQRES 25 A 439 PHE PRO THR LEU PRO ALA PRO VAL VAL THR ARG ARG LEU SEQRES 26 A 439 VAL LEU THR GLU ASP MET MET ALA ALA ARG PHE PHE ILE SEQRES 27 A 439 ASN GLY GLN VAL PHE ASP HIS ARG ARG VAL ASP LEU LYS SEQRES 28 A 439 GLY GLN ALA GLN THR VAL GLU VAL TRP GLU VAL GLU ASN SEQRES 29 A 439 GLN GLY ASP MET ASP HIS PRO PHE HIS LEU HIS VAL HIS SEQRES 30 A 439 PRO PHE GLN VAL LEU SER VAL GLY GLY ARG PRO PHE PRO SEQRES 31 A 439 TYR ARG ALA TRP LYS ASP VAL VAL ASN LEU LYS ALA GLY SEQRES 32 A 439 GLU VAL ALA ARG LEU LEU VAL PRO LEU ARG GLU LYS GLY SEQRES 33 A 439 ARG THR VAL PHE HIS CYS HIS ILE VAL GLU HIS GLU ASP SEQRES 34 A 439 ARG GLY MET MET GLY VAL LEU GLU VAL GLY HET CU A 501 1 HET CU A 502 1 HET CU A 503 1 HET MPD A 504 8 HET MPD A 505 8 HET MPD A 506 8 HET MPD A 507 8 HET MPD A 508 8 HET MPD A 509 8 HET MPD A 510 8 HET MPD A 511 8 HET MPD A 512 8 HET MPD A 513 8 HET MPD A 514 8 HET MPD A 515 8 HET MPD A 516 8 HET MPD A 517 8 HETNAM CU COPPER (II) ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 2 CU 3(CU 2+) FORMUL 5 MPD 14(C6 H14 O2) FORMUL 19 HOH *453(H2 O) HELIX 1 AA1 ARG A 141 GLY A 149 1 9 HELIX 2 AA2 SER A 158 ALA A 162 5 5 HELIX 3 AA3 ILE A 163 GLU A 168 1 6 HELIX 4 AA4 THR A 190 GLY A 197 1 8 HELIX 5 AA5 ILE A 447 ARG A 453 1 7 SHEET 1 AA1 5 VAL A 32 ARG A 34 0 SHEET 2 AA1 5 THR A 71 VAL A 74 1 O THR A 71 N VAL A 33 SHEET 3 AA1 5 GLY A 152 VAL A 156 1 O VAL A 155 N LEU A 72 SHEET 4 AA1 5 GLY A 130 HIS A 135 -1 N PHE A 132 O LEU A 154 SHEET 5 AA1 5 HIS A 95 HIS A 97 -1 N HIS A 95 O HIS A 135 SHEET 1 AA2 4 GLN A 56 TYR A 63 0 SHEET 2 AA2 4 LEU A 39 ILE A 53 -1 N THR A 49 O LEU A 60 SHEET 3 AA2 4 THR A 79 ASN A 86 1 O GLU A 85 N LEU A 44 SHEET 4 AA2 4 SER A 117 THR A 123 -1 O TYR A 120 N LEU A 82 SHEET 1 AA3 7 ALA A 208 LEU A 209 0 SHEET 2 AA3 7 LEU A 202 VAL A 205 -1 N VAL A 205 O ALA A 208 SHEET 3 AA3 7 GLU A 170 LEU A 179 -1 N LEU A 179 O LEU A 202 SHEET 4 AA3 7 THR A 219 ASN A 226 1 O LEU A 225 N LEU A 176 SHEET 5 AA3 7 ARG A 268 ARG A 274 -1 O ALA A 269 N LEU A 224 SHEET 6 AA3 7 LEU A 242 ALA A 247 -1 N ILE A 245 O GLU A 270 SHEET 7 AA3 7 GLY A 250 VAL A 258 -1 O VAL A 258 N LEU A 242 SHEET 1 AA4 2 LEU A 181 GLN A 182 0 SHEET 2 AA4 2 ARG A 185 PRO A 186 -1 O ARG A 185 N GLN A 182 SHEET 1 AA5 5 THR A 212 VAL A 214 0 SHEET 2 AA5 5 GLU A 313 ILE A 319 1 O TYR A 317 N LEU A 213 SHEET 3 AA5 5 ARG A 280 LEU A 286 -1 N LEU A 283 O LEU A 315 SHEET 4 AA5 5 TYR A 233 LEU A 237 -1 N ARG A 234 O LEU A 286 SHEET 5 AA5 5 LEU A 261 LEU A 263 -1 O LEU A 261 N LEU A 235 SHEET 1 AA6 2 MET A 293 ASP A 297 0 SHEET 2 AA6 2 ALA A 302 PRO A 306 -1 O MET A 305 N GLY A 294 SHEET 1 AA7 6 ARG A 358 ILE A 361 0 SHEET 2 AA7 6 VAL A 344 ASP A 353 -1 N ASP A 353 O ARG A 358 SHEET 3 AA7 6 VAL A 380 ASN A 387 1 O VAL A 382 N ARG A 346 SHEET 4 AA7 6 VAL A 428 PRO A 434 -1 O VAL A 433 N GLU A 381 SHEET 5 AA7 6 PHE A 402 VAL A 407 -1 N LEU A 405 O ARG A 430 SHEET 6 AA7 6 ARG A 410 PRO A 411 -1 O ARG A 410 N VAL A 407 SHEET 1 AA8 6 ARG A 358 ILE A 361 0 SHEET 2 AA8 6 VAL A 344 ASP A 353 -1 N ASP A 353 O ARG A 358 SHEET 3 AA8 6 VAL A 380 ASN A 387 1 O VAL A 382 N ARG A 346 SHEET 4 AA8 6 VAL A 428 PRO A 434 -1 O VAL A 433 N GLU A 381 SHEET 5 AA8 6 PHE A 402 VAL A 407 -1 N LEU A 405 O ARG A 430 SHEET 6 AA8 6 TRP A 417 LYS A 418 -1 O LYS A 418 N PHE A 402 SHEET 1 AA9 5 LEU A 373 GLY A 375 0 SHEET 2 AA9 5 MET A 456 VAL A 461 1 O GLU A 460 N GLY A 375 SHEET 3 AA9 5 GLY A 439 CYS A 445 -1 N THR A 441 O LEU A 459 SHEET 4 AA9 5 HIS A 393 LEU A 397 -1 N HIS A 396 O HIS A 444 SHEET 5 AA9 5 VAL A 420 LEU A 423 -1 O VAL A 421 N PHE A 395 LINK ND1 HIS A 97 CU CU A 502 1555 1555 1.99 LINK NE2 HIS A 135 CU CU A 502 1555 1555 2.07 LINK NE2AHIS A 137 CU CU A 501 1555 1555 2.42 LINK NE2BHIS A 137 CU CU A 501 1555 1555 2.57 LINK ND1 HIS A 393 CU CU A 503 1555 1555 2.21 LINK NE2 HIS A 398 CU CU A 501 1555 1555 1.80 LINK NE2 HIS A 444 CU CU A 501 1555 1555 1.89 LINK SG CYS A 445 CU CU A 503 1555 1555 2.14 LINK NE2 HIS A 446 CU CU A 502 1555 1555 2.13 LINK ND1 HIS A 450 CU CU A 503 1555 1555 2.08 CISPEP 1 PHE A 67 PRO A 68 0 -4.50 SITE 1 AC1 5 HIS A 95 HIS A 137 HIS A 396 HIS A 398 SITE 2 AC1 5 HIS A 444 SITE 1 AC2 4 HIS A 97 TRP A 133 HIS A 135 HIS A 446 SITE 1 AC3 4 HIS A 393 CYS A 445 HIS A 450 MET A 455 SITE 1 AC4 7 ASP A 248 LEU A 263 GLU A 267 ARG A 268 SITE 2 AC4 7 TYR A 414 LYS A 418 MPD A 511 SITE 1 AC5 4 GLY A 140 TRP A 194 ARG A 453 MPD A 510 SITE 1 AC6 5 GLU A 127 LEU A 128 SER A 334 HOH A 807 SITE 2 AC6 5 HOH A 834 SITE 1 AC7 4 GLN A 56 LEU A 339 ARG A 436 HOH A 607 SITE 1 AC8 3 MET A 295 MET A 355 MPD A 512 SITE 1 AC9 8 PRO A 28 PHE A 67 ASN A 206 ALA A 208 SITE 2 AC9 8 HOH A 734 HOH A 820 HOH A 866 HOH A 948 SITE 1 AD1 7 PRO A 144 PRO A 188 HIS A 189 TRP A 194 SITE 2 AD1 7 MPD A 505 HOH A 691 HOH A 846 SITE 1 AD2 5 VAL A 258 GLU A 260 MPD A 504 HOH A 827 SITE 2 AD2 5 HOH A 855 SITE 1 AD3 2 MPD A 508 HOH A 845 SITE 1 AD4 7 LYS A 104 THR A 212 ARG A 280 TYR A 317 SITE 2 AD4 7 HOH A 671 HOH A 712 HOH A 824 SITE 1 AD5 5 PRO A 241 GLU A 257 SER A 259 ARG A 276 SITE 2 AD5 5 PRO A 326 SITE 1 AD6 5 SER A 26 VAL A 214 GLN A 216 ASN A 362 SITE 2 AD6 5 GLN A 364 SITE 1 AD7 4 LYS A 31 LYS A 43 LEU A 44 GLY A 64 SITE 1 AD8 4 PRO A 342 VAL A 343 VAL A 344 THR A 345 CRYST1 93.510 109.990 96.070 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010694 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009092 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010409 0.00000